Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1017
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.52 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.69 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.91 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = +1

Query: 415  RGAPRSETVXXXXXXXXXXXXXNAMPCCCCATLTLPQRDLL----TQPILHINMQYR 573
            RG  R  ++             +A P   C T+++PQ+  L     QP L +N  YR
Sbjct: 1245 RGQERQRSLFKDSSPATALMLQHAPPAYSCGTVSVPQQQQLPPSSPQPRLTVNHAYR 1301


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 112 PETVSLIWFILECDWISDVEQPVSLYCACYFSSARR 5
           PE +S  + IL+ DW+ ++ +P      C+F +A++
Sbjct: 69  PENMSEDYRILDVDWLHNIWRP-----DCFFKNAKK 99


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 507 HSHFTAT---RPSDSTYPSHKHAVPIATS 584
           HSH  AT     S +  P H+H+ P+A S
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHS 451


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 112 PETVSLIWFILECDWISDVEQPVSLY 35
           PE ++  + +LE DW+ ++ +P S +
Sbjct: 100 PENMTSEYRLLEVDWLKNMWRPDSFF 125


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 419 EPPAAKPCCPLH 454
           EPP  K  CPLH
Sbjct: 339 EPPRRKNNCPLH 350


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 424 GLLYSPASFSSPRLLAHSVESRR 356
           G  Y P +  SPRL  H +   R
Sbjct: 552 GPSYDPMAVVSPRLKVHGIRGLR 574


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,907
Number of Sequences: 438
Number of extensions: 3443
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)