BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1017 (697 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.52 DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 25 0.69 AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.91 DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 2.1 AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 4.8 AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 22 6.4 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 25.4 bits (53), Expect = 0.52 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Frame = +1 Query: 415 RGAPRSETVXXXXXXXXXXXXXNAMPCCCCATLTLPQRDLL----TQPILHINMQYR 573 RG R ++ +A P C T+++PQ+ L QP L +N YR Sbjct: 1245 RGQERQRSLFKDSSPATALMLQHAPPAYSCGTVSVPQQQQLPPSSPQPRLTVNHAYR 1301 >DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride channel protein. Length = 383 Score = 25.0 bits (52), Expect = 0.69 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -1 Query: 112 PETVSLIWFILECDWISDVEQPVSLYCACYFSSARR 5 PE +S + IL+ DW+ ++ +P C+F +A++ Sbjct: 69 PENMSEDYRILDVDWLHNIWRP-----DCFFKNAKK 99 >AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic acetylcholine receptoralpha7-1 protein. Length = 555 Score = 24.6 bits (51), Expect = 0.91 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%) Frame = +3 Query: 507 HSHFTAT---RPSDSTYPSHKHAVPIATS 584 HSH AT S + P H+H+ P+A S Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHS 451 >DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride channel protein. Length = 428 Score = 23.4 bits (48), Expect = 2.1 Identities = 8/26 (30%), Positives = 17/26 (65%) Frame = -1 Query: 112 PETVSLIWFILECDWISDVEQPVSLY 35 PE ++ + +LE DW+ ++ +P S + Sbjct: 100 PENMTSEYRLLEVDWLKNMWRPDSFF 125 >AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic acetylcholine Apisa7-2 subunit protein. Length = 461 Score = 22.2 bits (45), Expect = 4.8 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = +2 Query: 419 EPPAAKPCCPLH 454 EPP K CPLH Sbjct: 339 EPPRRKNNCPLH 350 >AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. Length = 615 Score = 21.8 bits (44), Expect = 6.4 Identities = 9/23 (39%), Positives = 11/23 (47%) Frame = -1 Query: 424 GLLYSPASFSSPRLLAHSVESRR 356 G Y P + SPRL H + R Sbjct: 552 GPSYDPMAVVSPRLKVHGIRGLR 574 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 180,907 Number of Sequences: 438 Number of extensions: 3443 Number of successful extensions: 7 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 21317625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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