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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1016
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   214   7e-56
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...   188   3e-48
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   172   3e-43
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151...    51   8e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744...    50   2e-06
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929...    48   7e-06
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438...    47   1e-05
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726...    35   0.073
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264...    35   0.073
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    31   0.90 
07_03_1414 - 26403361-26403969                                         29   3.6  
07_03_1422 + 26462871-26463434,26463772-26463897                       28   8.4  
07_03_1413 - 26396426-26396890                                         28   8.4  
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128...    28   8.4  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  214 bits (522), Expect = 7e-56
 Identities = 103/181 (56%), Positives = 128/181 (70%)
 Frame = +2

Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPLFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22  NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81

Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
           K  A  LFK+L KYRPE                          +P  ++ G N VT L+E
Sbjct: 82  KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140

Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700
           + KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V+
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVK 200

Query: 701 S 703
           +
Sbjct: 201 N 201


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score =  188 bits (459), Expect = 3e-48
 Identities = 95/181 (52%), Positives = 124/181 (68%)
 Frame = +2

Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPLFEKRPK F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23  NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82

Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
           K       ++L++ + E                          +P  ++ G + VT L+E
Sbjct: 83  KNLGCQKERLLKRAQAEAEGKTVEAK-----------------KPIVVKYGLDHVTYLIE 125

Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700
           + KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V+
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVK 185

Query: 701 S 703
           +
Sbjct: 186 N 186


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  172 bits (418), Expect = 3e-43
 Identities = 91/181 (50%), Positives = 114/181 (62%)
 Frame = +2

Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPLFEKRPK F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6   NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65

Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
           K  A  LFK+L KYRPE                          +P  ++ G N VT L+E
Sbjct: 66  KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124

Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700
           + KAQLVVIAHDVDPIELV++LPALCRKM               +VH+KT + L LT V+
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVK 170

Query: 701 S 703
           +
Sbjct: 171 N 171


>10_01_0125 +
           1509642-1509759,1509847-1509950,1510693-1510824,
           1510936-1510962
          Length = 126

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 655
           ++ G N  TK + +  A+ VV+A D +P+E++L LP L     VPY  V  K  LG    
Sbjct: 33  LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92

Query: 656 VHRKTCTCLALTNVES 703
           V R    C   +N  S
Sbjct: 93  VTRPVIACSVTSNEAS 108


>03_02_0321 +
           7443835-7443837,7443957-7444077,7444168-7444271,
           7445056-7445187,7445285-7445311
          Length = 128

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 655
           ++ G N  TK + +  ++ VV+A D +P+E++L LP L     VPY  V  K  LG    
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94

Query: 656 VHRKTCTCLALTN 694
           V R    C   +N
Sbjct: 95  VTRPVIACSVTSN 107


>06_01_1127 +
           9294079-9294193,9294300-9294369,9294611-9294716,
           9295665-9295805,9296377-9296475
          Length = 176

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +2

Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 655
           ++ G   V K + + +  L +IA ++ PI+++  +P LC +  +PY  V  K  L     
Sbjct: 45  LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104

Query: 656 VHRKTCTCLALTNVESG 706
             R TC  L LT    G
Sbjct: 105 TKRPTCCVLVLTKPAKG 121


>02_05_0610 -
           30342105-30342266,30343024-30343129,30343788-30343857,
           30343978-30344092
          Length = 150

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +2

Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 655
           ++ G   V K + +    L VIA ++ PI+++  +P LC +  +PY  V  K  L     
Sbjct: 45  LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104

Query: 656 VHRKTCTCLALTNVESG 706
             R TC  L +T    G
Sbjct: 105 TKRPTCCVLVMTKPAKG 121


>07_01_0875 -
           7265529-7265588,7265681-7265746,7266008-7266293,
           7267138-7267142
          Length = 138

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649
           G     K +EK  AQL V+A D D  + V  + ALC +  V    V     LG
Sbjct: 41  GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93


>07_01_0360 +
           2646279-2646283,2647113-2647398,2648043-2648108,
           2648199-2648258
          Length = 138

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649
           G     K +EK  AQL V+A D D  + V  + ALC +  V    V     LG
Sbjct: 41  GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 259 PHPAPEGCTSASSESAPSDQP 321
           P PAPE   +A+ E+APSD P
Sbjct: 53  PQPAPEEAPAAAEEAAPSDDP 73


>07_03_1414 - 26403361-26403969
          Length = 202

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131
           AL A +  P +  G++  + + +T  + L P LEE +    GL L+D
Sbjct: 76  ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122


>07_03_1422 + 26462871-26463434,26463772-26463897
          Length = 229

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131
           AL   +  P Y  G+V  + + +T  + L P LEE      GL L D
Sbjct: 74  ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120


>07_03_1413 - 26396426-26396890
          Length = 154

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131
           AL   +  P Y  G+V  + + +T  + L P LEE      GL L D
Sbjct: 28  ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74


>02_04_0587 +
           24110333-24110584,24111193-24111261,24112347-24112850,
           24113094-24113336
          Length = 355

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 206 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 114
           P    SSLA +RR  +R   AQP  PP  RR
Sbjct: 24  PSSAASSLAFARRAAARPLRAQPLLPPAARR 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,446
Number of Sequences: 37544
Number of extensions: 357469
Number of successful extensions: 1195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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