Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1016
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 214 7e-56
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 188 3e-48
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 172 3e-43
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 51 8e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 50 2e-06
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 48 7e-06
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 47 1e-05
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.073
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.073
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.90
07_03_1414 - 26403361-26403969 29 3.6
07_03_1422 + 26462871-26463434,26463772-26463897 28 8.4
07_03_1413 - 26396426-26396890 28 8.4
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 8.4
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 214 bits (522), Expect = 7e-56
Identities = 103/181 (56%), Positives = 128/181 (70%)
Frame = +2
Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140
Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700
+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V+
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVK 200
Query: 701 S 703
+
Sbjct: 201 N 201
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 188 bits (459), Expect = 3e-48
Identities = 95/181 (52%), Positives = 124/181 (68%)
Frame = +2
Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
K ++L++ + E +P ++ G + VT L+E
Sbjct: 83 KNLGCQKERLLKRAQAEAEGKTVEAK-----------------KPIVVKYGLDHVTYLIE 125
Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700
+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V+
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVK 185
Query: 701 S 703
+
Sbjct: 186 N 186
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 172 bits (418), Expect = 3e-43
Identities = 91/181 (50%), Positives = 114/181 (62%)
Frame = +2
Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124
Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700
+ KAQLVVIAHDVDPIELV++LPALCRKM +VH+KT + L LT V+
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVK 170
Query: 701 S 703
+
Sbjct: 171 N 171
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 51.2 bits (117), Expect = 8e-07
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 655
++ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92
Query: 656 VHRKTCTCLALTNVES 703
V R C +N S
Sbjct: 93 VTRPVIACSVTSNEAS 108
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 655
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 656 VHRKTCTCLALTN 694
V R C +N
Sbjct: 95 VTRPVIACSVTSN 107
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 655
++ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104
Query: 656 VHRKTCTCLALTNVESG 706
R TC L LT G
Sbjct: 105 TKRPTCCVLVLTKPAKG 121
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 655
++ G V K + + L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104
Query: 656 VHRKTCTCLALTNVESG 706
R TC L +T G
Sbjct: 105 TKRPTCCVLVMTKPAKG 121
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 259 PHPAPEGCTSASSESAPSDQP 321
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1414 - 26403361-26403969
Length = 202
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131
AL A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 206 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 114
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,446
Number of Sequences: 37544
Number of extensions: 357469
Number of successful extensions: 1195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -