BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1016 (708 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 214 7e-56 01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 188 3e-48 08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 172 3e-43 10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 51 8e-07 03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 50 2e-06 06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 48 7e-06 02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 47 1e-05 07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.073 07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.073 06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.90 07_03_1414 - 26403361-26403969 29 3.6 07_03_1422 + 26462871-26463434,26463772-26463897 28 8.4 07_03_1413 - 26396426-26396890 28 8.4 02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 8.4 >09_04_0677 - 19388888-19389019,19389124-19389216,19389317-19389445, 19389559-19389728,19390280-19390481,19390576-19390623, 19390797-19390799 Length = 258 Score = 214 bits (522), Expect = 7e-56 Identities = 103/181 (56%), Positives = 128/181 (70%) Frame = +2 Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340 NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81 Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520 K A LFK+L KYRPE +P ++ G N VT L+E Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140 Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700 + KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V+ Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVK 200 Query: 701 S 703 + Sbjct: 201 N 201 >01_07_0018 - 40488702-40488833,40488928-40489020,40489125-40489253, 40489379-40489500,40490292-40490544,40490636-40490638 Length = 243 Score = 188 bits (459), Expect = 3e-48 Identities = 95/181 (52%), Positives = 124/181 (68%) Frame = +2 Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340 NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82 Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520 K ++L++ + E +P ++ G + VT L+E Sbjct: 83 KNLGCQKERLLKRAQAEAEGKTVEAK-----------------KPIVVKYGLDHVTYLIE 125 Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700 + KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V+ Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVK 185 Query: 701 S 703 + Sbjct: 186 N 186 >08_02_0211 - 14333553-14333684,14333795-14333887,14334019-14334105, 14334220-14334389,14334985-14335186,14335604-14335606 Length = 228 Score = 172 bits (418), Expect = 3e-43 Identities = 91/181 (50%), Positives = 114/181 (62%) Frame = +2 Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340 NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65 Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520 K A LFK+L KYRPE +P ++ G N VT L+E Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124 Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 700 + KAQLVVIAHDVDPIELV++LPALCRKM +VH+KT + L LT V+ Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVK 170 Query: 701 S 703 + Sbjct: 171 N 171 >10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824, 1510936-1510962 Length = 126 Score = 51.2 bits (117), Expect = 8e-07 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = +2 Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 655 ++ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92 Query: 656 VHRKTCTCLALTNVES 703 V R C +N S Sbjct: 93 VTRPVIACSVTSNEAS 108 >03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271, 7445056-7445187,7445285-7445311 Length = 128 Score = 49.6 bits (113), Expect = 2e-06 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Frame = +2 Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 655 ++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 Query: 656 VHRKTCTCLALTN 694 V R C +N Sbjct: 95 VTRPVIACSVTSN 107 >06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716, 9295665-9295805,9296377-9296475 Length = 176 Score = 48.0 bits (109), Expect = 7e-06 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Frame = +2 Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 655 ++ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104 Query: 656 VHRKTCTCLALTNVESG 706 R TC L LT G Sbjct: 105 TKRPTCCVLVLTKPAKG 121 >02_05_0610 - 30342105-30342266,30343024-30343129,30343788-30343857, 30343978-30344092 Length = 150 Score = 47.2 bits (107), Expect = 1e-05 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Frame = +2 Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 655 ++ G V K + + L VIA ++ PI+++ +P LC + +PY V K L Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104 Query: 656 VHRKTCTCLALTNVESG 706 R TC L +T G Sbjct: 105 TKRPTCCVLVMTKPAKG 121 >07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293, 7267138-7267142 Length = 138 Score = 34.7 bits (76), Expect = 0.073 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = +2 Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649 G K +EK AQL V+A D D + V + ALC + V V LG Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93 >07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108, 2648199-2648258 Length = 138 Score = 34.7 bits (76), Expect = 0.073 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = +2 Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649 G K +EK AQL V+A D D + V + ALC + V V LG Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93 >06_03_0392 + 20318728-20319309,20319596-20319725,20319844-20319895, 20319995-20320061,20320547-20320633,20322526-20322567, 20322635-20322740,20323155-20323219,20323299-20323343, 20323442-20323549,20323636-20323723,20324147-20324193, 20324355-20324363 Length = 475 Score = 31.1 bits (67), Expect = 0.90 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 259 PHPAPEGCTSASSESAPSDQP 321 P PAPE +A+ E+APSD P Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73 >07_03_1414 - 26403361-26403969 Length = 202 Score = 29.1 bits (62), Expect = 3.6 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -3 Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131 AL A + P + G++ + + +T + L P LEE + GL L+D Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122 >07_03_1422 + 26462871-26463434,26463772-26463897 Length = 229 Score = 27.9 bits (59), Expect = 8.4 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131 AL + P Y G+V + + +T + L P LEE GL L D Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120 >07_03_1413 - 26396426-26396890 Length = 154 Score = 27.9 bits (59), Expect = 8.4 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 271 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 131 AL + P Y G+V + + +T + L P LEE GL L D Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74 >02_04_0587 + 24110333-24110584,24111193-24111261,24112347-24112850, 24113094-24113336 Length = 355 Score = 27.9 bits (59), Expect = 8.4 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -2 Query: 206 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 114 P SSLA +RR +R AQP PP RR Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,319,446 Number of Sequences: 37544 Number of extensions: 357469 Number of successful extensions: 1195 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1192 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1827423340 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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