Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1016
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             224   6e-59
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       126   2e-29
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        57   2e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          45   5e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               35   0.074
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        29   4.9  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   6.5  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           28   8.5  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  224 bits (547), Expect = 6e-59
 Identities = 105/179 (58%), Positives = 127/179 (70%)
 Frame = +2

Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
           + +   LFK+L KYRPET                         +P  ++ G N +T LVE
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148

Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 697
            KKAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGV 207


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  126 bits (303), Expect = 2e-29
 Identities = 61/113 (53%), Positives = 73/113 (64%)
 Frame = +2

Query: 359 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 538
           LFK+L KYRPET                         +P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 539 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 697
           VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K  T L +T V
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGV 116


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +2

Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 655
           +R G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153

Query: 656 VHRKTCTCLALTN 694
           V R    C    N
Sbjct: 154 VTRPVIACAVTVN 166


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 470 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 637
           +  T+R G   V K + K +   V++A DV PI+++  +P +C    +PY  V  K
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 491 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649
           G +   K ++K++A L +++++ D    V  + ALC + G+P   V    +LG
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 154 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 324
           DR  ++ E  KE+CYW GH   + + + + +  +          T+++SE   S +P+
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 154 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 324
           DR  ++ E  KE+CYW GH   + + + + +  +          T++ SE   S +P+
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASKSEGGASAKPV 243


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 472 PLWWRLIFLGNLSFSSFPQPLFPG 401
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 283 TSASSESAPSDQPIYPDTG 339
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 687 RAKHVHVLRCTSAPRRDLPLT 625
           R +H H+ RCTSAP    P T
Sbjct: 74  RKRHFHLRRCTSAPEPSSPNT 94


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 230 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 379
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,254,041
Number of Sequences: 59808
Number of extensions: 374857
Number of successful extensions: 1071
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)