Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1016
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   216   1e-56
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   204   4e-53
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   8e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   1e-21
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.028
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  216 bits (528), Expect = 1e-56
 Identities = 100/179 (55%), Positives = 127/179 (70%)
 Frame = +2

Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149

Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 697
            ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL +V
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDV 208


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  204 bits (499), Expect = 4e-53
 Identities = 100/179 (55%), Positives = 127/179 (70%)
 Frame = +2

Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 341 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 520
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE
Sbjct: 90  SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129

Query: 521 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 697
            ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG +V RKT   +AL +V
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDV 188


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (290), Expect = 8e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +2

Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 341 KTTAKGLFKILEKYRPET 394
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +2

Query: 161 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 340
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 21/56 (37%), Positives = 36/56 (64%)
 Frame = +2

Query: 482 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 649
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 479 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 655
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG A+
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 656 VHRK 667
            HR+
Sbjct: 128 GHRR 131


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -3

Query: 436 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 317
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 309 LRSTNLPRHWTRLQLRA 359
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,704,293
Number of Sequences: 27780
Number of extensions: 275942
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)