Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1014
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.68 
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   8.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.4  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 252 AVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLP 136
           A ILT+TSP      + +S  S   +   TAA HL   P
Sbjct: 148 APILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSP 186


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 250 RDLNAHFTGFWRVHFNLLD 194
           R +NAH +G   V  NLLD
Sbjct: 55  RYMNAHLSGIQLVVRNLLD 73


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 500 PDGTRRFRCKGQELYH 547
           PDGT  +   GQ++ H
Sbjct: 417 PDGTMGYMMDGQQMMH 432


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,411
Number of Sequences: 336
Number of extensions: 4376
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)