Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1014
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   9e-23
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.049
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            36   0.049
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)               29   4.2  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  29   5.6  
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)                  28   7.4  
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)          28   7.4  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)                  28   7.4  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score =  104 bits (249), Expect = 9e-23
 Identities = 51/80 (63%), Positives = 54/80 (67%)
 Frame = +2

Query: 146 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 325
           I C AAVAWE  KPLSIE IEV PPKA EVR+KI ATGVCHTDAYTLSG DPEG+FP +L
Sbjct: 2   ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGLFPCIL 61

Query: 326 XXXXXXXXXXXXXXXTSVKP 385
                          T VKP
Sbjct: 62  GHEGGGIVESVGEGVTKVKP 81


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 29/93 (31%), Positives = 39/93 (41%)
 Frame = +2

Query: 230 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLY 409
           EV VK+  +G+C  D   L G+ P     VVL                +V  GD VV   
Sbjct: 75  EVIVKVAYSGICDRDLQILEGELPAAKC-VVLGHEFSGVVSDVGSDVKNVSIGDRVVVNP 133

Query: 410 VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 508
              CNTCK C   + + C+K  +    GV  +G
Sbjct: 134 NSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNG 166


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 24/93 (25%), Positives = 37/93 (39%)
 Frame = +2

Query: 230 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLY 409
           +V VKI  + V  TD + L G+  +    ++L                 V  GD VV   
Sbjct: 27  DVVVKIAYSAVSGTDLHVLEGRI-DCAKSIILGHQFVGIVKEIGADVQHVSVGDRVVINP 85

Query: 410 VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 508
           +  C  C FCL  + +LC+        G+  +G
Sbjct: 86  LTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = +2

Query: 209 VDPPKAGEVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSV 379
           +D  +  +V++ +   G+C +D  Y   G   + V   P+VL               + +
Sbjct: 14  IDDLRLVQVQISMHTVGICGSDVHYWKHGCIGDFVLTAPMVLGHESSGVICAVGEGVSDL 73

Query: 380 KPGDHVVPLYVPQCNTCKFCLNPKTNLCQKV 472
           K GD V       C TC +C   + NLC K+
Sbjct: 74  KEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104


>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = -2

Query: 717 AQFDPGSTLAVFKAAP*PVGTPHPSKQT--LFNGAASATLQREISRT 583
           ++ +PGST ++  ++  P  +P+P+K +  LF G +S+T+ + +S T
Sbjct: 446 SEVEPGSTSSITGSSKYPPVSPNPAKPSNILFEGPSSSTVFKSLSPT 492


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 167 AWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTL 286
           AW  G  L ++   V P  A  +  +IT TG   T AYTL
Sbjct: 361 AWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTL 400


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +3

Query: 102  IGSCPVQSCQQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRI 281
            +GS P +S +  +K    +P+ R + +S   S  L     K  K     R  E+AIL R 
Sbjct: 987  VGSGP-ESIKMRIKGSRKFPKMRRQLSSTTTSAEL--IEHKQSKTTPSGRKLETAILRRA 1043

Query: 282  HSPEKI 299
            HSP+ +
Sbjct: 1044 HSPQTV 1049


>SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 132 QSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIH 284
           QS   L+  P +RG Q +    R  KW  + P KC ++ +  E A++ R+H
Sbjct: 3   QSGNALTPLPHTRGIQTNTLLLR--KWAVEAPSKCRMKGQTKE-AVVQRVH 50


>SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20)
          Length = 956

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/75 (20%), Positives = 35/75 (46%)
 Frame = +3

Query: 159 PQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIHSPEKILRECFL*YWDMKA 338
           P+SR  +  R  S   +    + V C  +     +A+L ++   + + R+C   YWD   
Sbjct: 462 PESRDPEVIRAQSDAERSRLLEDVSCMEQFGEKWAAVLDKVLPTKPVFRKC---YWDDSE 518

Query: 339 AESWRVSVRESLQSS 383
             ++ + +R +++ +
Sbjct: 519 GRAFEIHLRRAIKGT 533


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 129 QQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPV-KCALRSRPPESAILTRIHSPE 293
           Q S K  ++ PQ + KQASR     LK    KP  +    SRP ++++ T+   P+
Sbjct: 52  QASRKTKTSKPQDQDKQASRPRQASLKTKTSKPQDQDKQASRPRQASLKTKTSKPQ 107


>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
          Length = 208

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
 Frame = -1

Query: 586 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 419
           + CV +   T HE V F S T        S   H  +T     L   ++FR      CV 
Sbjct: 52  HECVTSRSITLHECVTFRSITLHERMTFRSITLHECVTFRSITLHECVTFRSITLHECVT 111

Query: 418 LWDV 407
            W +
Sbjct: 112 FWSI 115



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
 Frame = -1

Query: 586 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 419
           + CV     T HE V F S T        S   H  +T     L  +++FR      CV 
Sbjct: 107 HECVTFWSITLHECVTFWSITLHECVTFRSITLHECVTFRNITLHERVTFRSITLHECVT 166

Query: 418 LWDV 407
            W +
Sbjct: 167 FWSI 170


>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
          Length = 1592

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -1

Query: 703 WFNFGSIQGGSITCRYPASQ-QTNF 632
           W NFGS++G  +  +YP+S+ QTNF
Sbjct: 49  WQNFGSVEG--VLRQYPSSEWQTNF 71


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -2

Query: 549  KW*SSCPLQRNRLVPSGITP*P*VERTFWHKLVFGFKQNLHVLHCGTYRGTTWSPGLTEV 370
            +W     +  + LV   I P P +       L FG+  NL+    GTY   TW P +  V
Sbjct: 1070 RWLDKGTISASELVAGCILPLPYLSYRLLRHL-FGYSHNLN----GTYTDATWKPSVERV 1124


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 255 VAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 109
           V+V     S + G  +S SS    +P+S  +      T+PT DM A  N
Sbjct: 3   VSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51


>SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)
          Length = 287

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +2

Query: 422 NTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFR--CKGQELYHFMGCSTFSQYTVVLEI 595
           N   F +     L +++R ++ + V PDG  +    CK  E+    GC   + ++V    
Sbjct: 132 NLTSFTIAEFCPLLKEIRLSECRWVSPDGIIQVSLCCKDLEIVDLTGCWEITDHSVCSLA 191

Query: 596 SLCKVAEAAPLN 631
           S C   +   LN
Sbjct: 192 SFCNKLKVILLN 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,584,046
Number of Sequences: 59808
Number of extensions: 568967
Number of successful extensions: 1307
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)