BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1014 (784 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 9e-23 SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04 SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.049 SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 36 0.049 SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1 SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4 SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20) 29 4.2 SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 29 5.6 SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1) 28 7.4 SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) 28 7.4 SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4 SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4 SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024) 28 7.4 >SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 82 Score = 104 bits (249), Expect = 9e-23 Identities = 51/80 (63%), Positives = 54/80 (67%) Frame = +2 Query: 146 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 325 I C AAVAWE KPLSIE IEV PPKA EVR+KI ATGVCHTDAYTLSG DPEG+FP +L Sbjct: 2 ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATGVCHTDAYTLSGVDPEGLFPCIL 61 Query: 326 XXXXXXXXXXXXXXXTSVKP 385 T VKP Sbjct: 62 GHEGGGIVESVGEGVTKVKP 81 >SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 395 Score = 44.4 bits (100), Expect = 1e-04 Identities = 29/93 (31%), Positives = 39/93 (41%) Frame = +2 Query: 230 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLY 409 EV VK+ +G+C D L G+ P VVL +V GD VV Sbjct: 75 EVIVKVAYSGICDRDLQILEGELPAAKC-VVLGHEFSGVVSDVGSDVKNVSIGDRVVVNP 133 Query: 410 VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 508 CNTCK C + + C+K + GV +G Sbjct: 134 NSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNG 166 >SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 348 Score = 35.5 bits (78), Expect = 0.049 Identities = 24/93 (25%), Positives = 37/93 (39%) Frame = +2 Query: 230 EVRVKITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLY 409 +V VKI + V TD + L G+ + ++L V GD VV Sbjct: 27 DVVVKIAYSAVSGTDLHVLEGRI-DCAKSIILGHQFVGIVKEIGADVQHVSVGDRVVINP 85 Query: 410 VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 508 + C C FCL + +LC+ G+ +G Sbjct: 86 LTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118 >SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) Length = 303 Score = 35.5 bits (78), Expect = 0.049 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Frame = +2 Query: 209 VDPPKAGEVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSV 379 +D + +V++ + G+C +D Y G + V P+VL + + Sbjct: 14 IDDLRLVQVQISMHTVGICGSDVHYWKHGCIGDFVLTAPMVLGHESSGVICAVGEGVSDL 73 Query: 380 KPGDHVVPLYVPQCNTCKFCLNPKTNLCQKV 472 K GD V C TC +C + NLC K+ Sbjct: 74 KEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104 >SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 906 Score = 31.1 bits (67), Expect = 1.1 Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 2/47 (4%) Frame = -2 Query: 717 AQFDPGSTLAVFKAAP*PVGTPHPSKQT--LFNGAASATLQREISRT 583 ++ +PGST ++ ++ P +P+P+K + LF G +S+T+ + +S T Sbjct: 446 SEVEPGSTSSITGSSKYPPVSPNPAKPSNILFEGPSSSTVFKSLSPT 492 >SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 562 Score = 30.7 bits (66), Expect = 1.4 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +2 Query: 167 AWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTL 286 AW G L ++ V P A + +IT TG T AYTL Sbjct: 361 AWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTL 400 >SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1438 Score = 29.5 bits (63), Expect = 3.2 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = +3 Query: 102 IGSCPVQSCQQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRI 281 +GS P +S + +K +P+ R + +S S L K K R E+AIL R Sbjct: 987 VGSGP-ESIKMRIKGSRKFPKMRRQLSSTTTSAEL--IEHKQSKTTPSGRKLETAILRRA 1043 Query: 282 HSPEKI 299 HSP+ + Sbjct: 1044 HSPQTV 1049 >SB_37040| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 115 Score = 29.5 bits (63), Expect = 3.2 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +3 Query: 132 QSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIH 284 QS L+ P +RG Q + R KW + P KC ++ + E A++ R+H Sbjct: 3 QSGNALTPLPHTRGIQTNTLLLR--KWAVEAPSKCRMKGQTKE-AVVQRVH 50 >SB_25818| Best HMM Match : Pkinase (HMM E-Value=1.7e-20) Length = 956 Score = 29.1 bits (62), Expect = 4.2 Identities = 15/75 (20%), Positives = 35/75 (46%) Frame = +3 Query: 159 PQSRGKQASRCPSRRLKWTRQKPVKCALRSRPPESAILTRIHSPEKILRECFL*YWDMKA 338 P+SR + R S + + V C + +A+L ++ + + R+C YWD Sbjct: 462 PESRDPEVIRAQSDAERSRLLEDVSCMEQFGEKWAAVLDKVLPTKPVFRKC---YWDDSE 518 Query: 339 AESWRVSVRESLQSS 383 ++ + +R +++ + Sbjct: 519 GRAFEIHLRRAIKGT 533 >SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) Length = 1281 Score = 28.7 bits (61), Expect = 5.6 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +3 Query: 129 QQSVK*LSAWPQSRGKQASRCPSRRLKWTRQKPV-KCALRSRPPESAILTRIHSPE 293 Q S K ++ PQ + KQASR LK KP + SRP ++++ T+ P+ Sbjct: 52 QASRKTKTSKPQDQDKQASRPRQASLKTKTSKPQDQDKQASRPRQASLKTKTSKPQ 107 >SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1) Length = 208 Score = 28.3 bits (60), Expect = 7.4 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Frame = -1 Query: 586 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 419 + CV + T HE V F S T S H +T L ++FR CV Sbjct: 52 HECVTSRSITLHECVTFRSITLHERMTFRSITLHECVTFRSITLHECVTFRSITLHECVT 111 Query: 418 LWDV 407 W + Sbjct: 112 FWSI 115 Score = 27.9 bits (59), Expect = 9.8 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Frame = -1 Query: 586 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 419 + CV T HE V F S T S H +T L +++FR CV Sbjct: 107 HECVTFWSITLHECVTFWSITLHECVTFRSITLHECVTFRNITLHERVTFRSITLHECVT 166 Query: 418 LWDV 407 W + Sbjct: 167 FWSI 170 >SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24) Length = 1592 Score = 28.3 bits (60), Expect = 7.4 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%) Frame = -1 Query: 703 WFNFGSIQGGSITCRYPASQ-QTNF 632 W NFGS++G + +YP+S+ QTNF Sbjct: 49 WQNFGSVEG--VLRQYPSSEWQTNF 71 >SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1298 Score = 28.3 bits (60), Expect = 7.4 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = -2 Query: 549 KW*SSCPLQRNRLVPSGITP*P*VERTFWHKLVFGFKQNLHVLHCGTYRGTTWSPGLTEV 370 +W + + LV I P P + L FG+ NL+ GTY TW P + V Sbjct: 1070 RWLDKGTISASELVAGCILPLPYLSYRLLRHL-FGYSHNLN----GTYTDATWKPSVERV 1124 >SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 314 Score = 28.3 bits (60), Expect = 7.4 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = -2 Query: 255 VAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 109 V+V S + G +S SS +P+S + T+PT DM A N Sbjct: 3 VSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51 >SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024) Length = 287 Score = 28.3 bits (60), Expect = 7.4 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Frame = +2 Query: 422 NTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFR--CKGQELYHFMGCSTFSQYTVVLEI 595 N F + L +++R ++ + V PDG + CK E+ GC + ++V Sbjct: 132 NLTSFTIAEFCPLLKEIRLSECRWVSPDGIIQVSLCCKDLEIVDLTGCWEITDHSVCSLA 191 Query: 596 SLCKVAEAAPLN 631 S C + LN Sbjct: 192 SFCNKLKVILLN 203 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,584,046 Number of Sequences: 59808 Number of extensions: 568967 Number of successful extensions: 1307 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1303 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2143884611 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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