Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1014
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 283 7e-77
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 283 7e-77
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 278 3e-75
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 230 7e-61
Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical ... 42 5e-04
Z70782-3|CAA94841.1| 347|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical pr... 36 0.033
Z78419-6|CAB01704.1| 487|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z83119-4|CAE17866.1| 226|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL117207-8|CAB60399.1| 362|Caenorhabditis elegans Hypothetical ... 29 5.0
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 283 bits (695), Expect = 7e-77
Identities = 130/199 (65%), Positives = 146/199 (73%)
Frame = +2
Query: 128 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEG 307
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T VCHTDAYTL G DPEG
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEG 62
Query: 308 VFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQG 487
+FPVVL T PGDHVVPLYVPQC C++C NPKTNLCQK+R +QG
Sbjct: 63 LFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPKTNLCQKIRISQG 122
Query: 488 QGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLNKVCLLGCGVPTG 667
G MPDG+ RF C G++L+HFMGCSTFS+YTVV +ISLCKV APL KV LLGCG+ TG
Sbjct: 123 NGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTG 182
Query: 668 YGAALNTAKVEPGSNCAIF 724
YGA LNT KVE GS A++
Sbjct: 183 YGAVLNTCKVEEGSTVAVW 201
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 283 bits (695), Expect = 7e-77
Identities = 130/199 (65%), Positives = 146/199 (73%)
Frame = +2
Query: 128 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEG 307
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVKI T VCHTDAYTL G DPEG
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEG 62
Query: 308 VFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQG 487
+FPVVL T PGDHVVPLYVPQC C++C NPKTNLCQK+R +QG
Sbjct: 63 LFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPKTNLCQKIRISQG 122
Query: 488 QGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLNKVCLLGCGVPTG 667
G MPDG+ RF C G++L+HFMGCSTFS+YTVV +ISLCKV APL KV LLGCG+ TG
Sbjct: 123 NGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTG 182
Query: 668 YGAALNTAKVEPGSNCAIF 724
YGA LNT KVE GS A++
Sbjct: 183 YGAVLNTCKVEEGSTVAVW 201
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 278 bits (682), Expect = 3e-75
Identities = 130/201 (64%), Positives = 146/201 (72%), Gaps = 2/201 (0%)
Frame = +2
Query: 128 STVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVK--ITATGVCHTDAYTLSGKDP 301
ST G+VI C AAVAW A PLSIE I+V PPKA EVRVK I T VCHTDAYTL G DP
Sbjct: 3 STAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKFQILYTAVCHTDAYTLDGHDP 62
Query: 302 EGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRST 481
EG+FPVVL T PGDHVVPLYVPQC C++C NPKTNLCQK+R +
Sbjct: 63 EGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPKTNLCQKIRIS 122
Query: 482 QGQGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLNKVCLLGCGVP 661
QG G MPDG+ RF C G++L+HFMGCSTFS+YTVV +ISLCKV APL KV LLGCG+
Sbjct: 123 QGNGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGIS 182
Query: 662 TGYGAALNTAKVEPGSNCAIF 724
TGYGA LNT KVE GS A++
Sbjct: 183 TGYGAVLNTCKVEEGSTVAVW 203
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 230 bits (563), Expect = 7e-61
Identities = 102/160 (63%), Positives = 116/160 (72%)
Frame = +2
Query: 245 ITATGVCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCN 424
I T VCHTDAYTL G DPEG+FPVVL T PGDHVVPLYVPQC
Sbjct: 215 ILYTSVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGKGVTGFAPGDHVVPLYVPQCK 274
Query: 425 TCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLC 604
C++C NPKTN+CQK+R +QG G MPDGT RF C G++L+HFMGCSTFS+YTVV +ISLC
Sbjct: 275 ECEYCKNPKTNMCQKIRVSQGDGFMPDGTSRFTCNGKQLFHFMGCSTFSEYTVVADISLC 334
Query: 605 KVAEAAPLNKVCLLGCGVPTGYGAALNTAKVEPGSNCAIF 724
KV APL KV LLGCG+ TGYGA LNT KVE GS A++
Sbjct: 335 KVNPQAPLEKVSLLGCGISTGYGAVLNTCKVEEGSTVAVW 374
>Z81570-3|CAB04603.1| 351|Caenorhabditis elegans Hypothetical
protein K12G11.4 protein.
Length = 351
Score = 48.4 bits (110), Expect = 6e-06
Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 2/178 (1%)
Frame = +2
Query: 179 GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGK-DPEGVFPVVLXXXXXXXXXX 355
G PL + ++ V P+ E+ VKI +G+CH+D +T G + + P++
Sbjct: 19 GGPLEVRQVSVPQPQENELLVKIEYSGICHSDLHTWEGDFEYASICPLIGGHEGAGTVVT 78
Query: 356 XXXXXTSVKPGDHV-VPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKG 532
GD + L C C++C LC + Q G+ G
Sbjct: 79 IGSKVKGWNIGDRAGIKLINANCLNCEYCKTGHEPLCDHI---QNYGIDRHG-------- 127
Query: 533 QELYHFMGCSTFSQYTVVLEISLCKVAEAAPLNKVCLLGCGVPTGYGAALNTAKVEPG 706
TF +Y + +I KV+ L + CG T Y +L V+PG
Sbjct: 128 ----------TFQEYLTIRDIDAIKVSNDTNLAAAAPVLCGGVTAY-KSLKATNVKPG 174
>Z81570-2|CAB04604.1| 349|Caenorhabditis elegans Hypothetical
protein K12G11.3 protein.
Length = 349
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = +2
Query: 185 PLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSG--KDPEGVFPVVLXXXXXXXXXXX 358
PL + ++ V P E+ VKI +G+CH+D + G KD V P+V
Sbjct: 20 PLEVRQVPVPSPADDEILVKIEYSGICHSDLHVWLGDLKD-MSVCPLVGGHEGAGSVVQI 78
Query: 359 XXXXTSVKPGDHV-VPLYVPQCNTCKFCLNPKTNLCQKVRS 478
T + GD V L C C+FC LC +++
Sbjct: 79 GKNVTGWQLGDKAGVKLMNFNCLNCEFCKKGHEPLCHHIQN 119
>AF125951-1|AAD14690.3| 326|Caenorhabditis elegans Hypothetical
protein D2063.1 protein.
Length = 326
Score = 41.9 bits (94), Expect = 5e-04
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 3/196 (1%)
Frame = +2
Query: 143 VIKCLAAVAWEA-GKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGK-DPEGVFP 316
V K A+ +E+ G PL I+++ + P E+ VK+ +G+CH+D +T G P
Sbjct: 6 VPKTQRALIFESYGGPLEIKQLPIPQPNEDELLVKMEYSGICHSDVHTWLGDFHYVSKCP 65
Query: 317 VVLXXXXXXXXXXXXXXXTSVKPGDHV-VPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQG 493
++ + + GD V + L C C++C LC V +
Sbjct: 66 MIGGHEGAGSVISVGSKVKNWQIGDKVGIKLVQGNCLNCEYCQTGHEPLCPHVWNI---- 121
Query: 494 VMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLNKVCLLGCGVPTGYG 673
G +++ TF +Y + ++ K+ ++ + + CG T Y
Sbjct: 122 ----GVQKY-------------GTFQEYATIRDVDAIKIPKSMNMAAAAPVLCGGVTAY- 163
Query: 674 AALNTAKVEPGSNCAI 721
AL ++V+ G A+
Sbjct: 164 KALKESEVKSGQIVAV 179
>Z70782-3|CAA94841.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.5 protein.
Length = 347
Score = 36.3 bits (80), Expect = 0.025
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +2
Query: 188 LSIEEIEVDPPKAGEVRVKITATGVCHTDA--YTLSGKDPEGV-FPVVLXXXXXXXXXXX 358
L +E++ + P +V VK+ G+C +D +T P V P+++
Sbjct: 16 LRLEQVPIPKPGPNQVLVKVHTVGICGSDVHYWTHGAIGPFVVKEPMIVGHETSGIVSEV 75
Query: 359 XXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVR 475
+K GD + C C+ C + NLC ++R
Sbjct: 76 GNEVKHLKVGDRIAMEPGLPCKLCEHCKTGRYNLCPEMR 114
>Z70782-4|CAA94842.1| 347|Caenorhabditis elegans Hypothetical
protein R04B5.6 protein.
Length = 347
Score = 35.9 bits (79), Expect = 0.033
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Frame = +2
Query: 188 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVF----PVVLXXXXXXXXXX 355
L +E+ + P +V VKI G+C +D + L+ G F P+VL
Sbjct: 16 LRLEQAPISKPGPRQVLVKINTVGICGSDVHFLT-HGAIGSFVVKEPMVLGHESSGVVSE 74
Query: 356 XXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVR 475
K GD + C C+ C + NLC +R
Sbjct: 75 IGSEVKGFKVGDRIAMEPGLPCKLCEHCKIGRYNLCPDMR 114
>Z78419-6|CAB01704.1| 487|Caenorhabditis elegans Hypothetical
protein F26A3.6 protein.
Length = 487
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 155 LAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAY 280
L A+ + + PL E I DP + +++T T VC DAY
Sbjct: 284 LVAMRYCSCHPLMAELIHYDPSSYRDFLLRVTQTSVCSVDAY 325
>Z83119-4|CAE17866.1| 226|Caenorhabditis elegans Hypothetical
protein R05H10.7 protein.
Length = 226
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 80 TIISTFCDWQLSSAVMSTVGKVIKCLAAVAWEA-GKPLSIEEIEVDPPKAGEVRVKITAT 256
++++ + S+ V + G+++ CL AW+ + + EVD + I
Sbjct: 49 SLVARCLQFPFSTVVTTQSGEIVACLVNSAWKRDDNAVEGADYEVDEGLTENMTAFIKML 108
Query: 257 GVCHTDAYTLS 289
CH D + L+
Sbjct: 109 NTCHEDFWNLA 119
>AL117207-8|CAB60399.1| 362|Caenorhabditis elegans Hypothetical
protein Y60A3A.14 protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 544 VEFLSFTAESPSAIWHHTLTL 482
V+ F+AE+ + WHHT++L
Sbjct: 157 VQIFRFSAENSTGFWHHTISL 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,743,035
Number of Sequences: 27780
Number of extensions: 409760
Number of successful extensions: 1042
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -