Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1013
         (456 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.77 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   0.77 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   5.5  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   5.5  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   5.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.2  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +3

Query: 63  RIRTSKCRFSQSYRHLIGHERQRSGGSNQLLLRATQRTC 179
           R+   KC F   Y+H + +  +   GS          TC
Sbjct: 230 RLTCPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTC 268


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 369 GWRSNGFTCICLCTIRSAKWKARLHVHSC 455
           G  SNG  C CL T  SAK + +    SC
Sbjct: 182 GKASNGNKCCCLRTCSSAK-RPKFENSSC 209


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +1

Query: 268 WATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRM 384
           WA G        V+   YS      V    DTSL  GR+
Sbjct: 479 WANGTLAKLSPKVLEPLYSGNLAVSVATPNDTSLVRGRL 517


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +2

Query: 92   TELSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*T 232
            TE   P W      WW   T S   T      ++R   TR   TS T
Sbjct: 1028 TEHMHPDWTTKPSTWWSSTTTSPWWTTT---TTRRTTTTRPTTTSTT 1071


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 345 PCYSGHFTGWRSNGFTCIC 401
           PC +G     + N F CIC
Sbjct: 76  PCENGGTCVDKINAFQCIC 94


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 280 CQSPTNQQYFQR 245
           CQ+ +N +YFQR
Sbjct: 200 CQTVSNFEYFQR 211


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 280 CQSPTNQQYFQR 245
           CQ+ +N +YFQR
Sbjct: 126 CQTVSNFEYFQR 137


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 51  SNCGRIRTSKCRFSQSYRHLIGHERQRSGG 140
           S  GRI   KC         + H RQ  GG
Sbjct: 630 SGAGRITCEKCGNKIDTSLFVDHIRQCVGG 659


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,145
Number of Sequences: 336
Number of extensions: 2799
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)