Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1013
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    98   5e-22
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    69   3e-13
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   1.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   2.4  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   2.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   3.1  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   4.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   9.6  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    24   9.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    24   9.6  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    24   9.6  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 98.3 bits (234), Expect = 5e-22
 Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 15/160 (9%)
 Frame = +1

Query: 19  ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 192
           +++ + P VLF I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE
Sbjct: 21  LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80

Query: 193 AELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP---------- 342
            E+ Y   +Y L+ + N  E +VGW+AT  ++   S++I   Y+    EP          
Sbjct: 81  VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPH 139

Query: 343 --VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTP 453
             VH+T++T ++   + ++ YV  P+G+       C F P
Sbjct: 140 PCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVP 178


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 68.9 bits (161), Expect = 3e-13
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
 Frame = +1

Query: 25  VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 195
           V VHP+VL   VD+Y R       RV+G LLG ++  VV V N + +P +E         
Sbjct: 17  VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76

Query: 196 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 372
            + N+   + E+ +++N++E +VGW+ TG ++      I+    +    PV V +D    
Sbjct: 77  LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPK 136

Query: 373 GGRMGLRAYVCV 408
              +   AY  +
Sbjct: 137 SVGLPTNAYFAI 148


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 67  YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 192
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 15   QY*CKGPSCCFISNCGRIRTSKCRF 89
            Q+  K P C  IS   R   SKCR+
Sbjct: 1955 QFQSKSPECVIISTMNRSCDSKCRY 1979


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 13  LNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 177
           LNI ++   +V+ ++++  ++RN D H  I       +  TSD  ++ + N F +    H
Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312

Query: 178 AD 183
            D
Sbjct: 313 RD 314


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 78  KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 221
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 248 LKVLLVGGRLAMK*PTTPLLYTSITPV 328
           LKV  V   +++  PTTP +Y S TPV
Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 166 HKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSV 306
           H+E   Q +  LN+       N   NS +++   ++  N +  H SV
Sbjct: 113 HEEIHHQQQLHLNHQYQHQHKNVAANSIDNLSRQYSQPNHINTHDSV 159


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 276 SRPPTNNTFRGIDSSVQLVN 217
           SR PT+N+   I+SSV L+N
Sbjct: 4   SRCPTDNSSSRINSSVPLIN 23


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 60  GRIRTSKCRFSQSYRHLIGHERQRS 134
           G+    KCR ++   HL+GHE + S
Sbjct: 281 GQYHKYKCRPAEYVCHLLGHEGEGS 305


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 229 NRRVNSSESIVGWWATGNEVTNHSSVIHE 315
           NR +N +  +   ++TGNEVT  SS + E
Sbjct: 8   NRSLNPTRGL-NLYSTGNEVTWFSSTVDE 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,390
Number of Sequences: 5004
Number of extensions: 43100
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)