BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1013 (456 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 98 5e-22 SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 69 3e-13 SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 1.8 SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 2.4 SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 26 2.4 SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 3.1 SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 4.2 SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 24 9.6 SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 24 9.6 SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 24 9.6 SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 24 9.6 >SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharomyces pombe|chr 2|||Manual Length = 302 Score = 98.3 bits (234), Expect = 5e-22 Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 15/160 (9%) Frame = +1 Query: 19 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVE 192 +++ + P VLF I+D R++ ++ RVIGTLLGT D +E+ +CF VPH E ++QVE Sbjct: 21 LNIVIEPAVLFSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVE 80 Query: 193 AELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP---------- 342 E+ Y +Y L+ + N E +VGW+AT ++ S++I Y+ EP Sbjct: 81 VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPH 139 Query: 343 --VHVTLDTSLAGGRMGLRAYVCVPLGVPNG-KQGCMFTP 453 VH+T++T ++ + ++ YV P+G+ C F P Sbjct: 140 PCVHLTVNTDVS-SPLAIKTYVSSPVGITERLADSCAFVP 178 >SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizosaccharomyces pombe|chr 3|||Manual Length = 324 Score = 68.9 bits (161), Expect = 3e-13 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%) Frame = +1 Query: 25 VKVHPVVLFQIVDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 195 V VHP+VL VD+Y R RV+G LLG ++ VV V N + +P +E Sbjct: 17 VIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWF 76 Query: 196 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 372 + N+ + E+ +++N++E +VGW+ TG ++ I+ + PV V +D Sbjct: 77 LDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPK 136 Query: 373 GGRMGLRAYVCV 408 + AY + Sbjct: 137 SVGLPTNAYFAI 148 >SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1334 Score = 26.6 bits (56), Expect = 1.8 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +1 Query: 67 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 192 Y+ R DSHR I L GT + + + + +K H ++E Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524 >SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2100 Score = 26.2 bits (55), Expect = 2.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +3 Query: 15 QY*CKGPSCCFISNCGRIRTSKCRF 89 Q+ K P C IS R SKCR+ Sbjct: 1955 QFQSKSPECVIISTMNRSCDSKCRY 1979 >SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 26.2 bits (55), Expect = 2.4 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%) Frame = +1 Query: 13 LNISVKVHPVVLFQIVDAYERRNADSHRVI-----GTLLGTSDKGVVEVTNCFCVPHKEH 177 LNI ++ +V+ ++++ ++RN D H I + TSD ++ + N F + H Sbjct: 253 LNIIIQEVDIVIGELIEGLKKRNIDKHVNIIFLSDHGMAPTSDNRLIWLDNMFNLSAVAH 312 Query: 178 AD 183 D Sbjct: 313 RD 314 >SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc25|Schizosaccharomyces pombe|chr 1|||Manual Length = 596 Score = 25.8 bits (54), Expect = 3.1 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 78 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 221 + R S SY I ++ SGG + + L A RTC S + T L + CL Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247 >SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizosaccharomyces pombe|chr 2|||Manual Length = 475 Score = 25.4 bits (53), Expect = 4.2 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +2 Query: 248 LKVLLVGGRLAMK*PTTPLLYTSITPV 328 LKV V +++ PTTP +Y S TPV Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402 >SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 24.2 bits (50), Expect = 9.6 Identities = 12/47 (25%), Positives = 21/47 (44%) Frame = +1 Query: 166 HKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSV 306 H+E Q + LN+ N NS +++ ++ N + H SV Sbjct: 113 HEEIHHQQQLHLNHQYQHQHKNVAANSIDNLSRQYSQPNHINTHDSV 159 >SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosaccharomyces pombe|chr 1|||Manual Length = 703 Score = 24.2 bits (50), Expect = 9.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 276 SRPPTNNTFRGIDSSVQLVN 217 SR PT+N+ I+SSV L+N Sbjct: 4 SRCPTDNSSSRINSSVPLIN 23 >SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 24.2 bits (50), Expect = 9.6 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +3 Query: 60 GRIRTSKCRFSQSYRHLIGHERQRS 134 G+ KCR ++ HL+GHE + S Sbjct: 281 GQYHKYKCRPAEYVCHLLGHEGEGS 305 >SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 589 Score = 24.2 bits (50), Expect = 9.6 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 229 NRRVNSSESIVGWWATGNEVTNHSSVIHE 315 NR +N + + ++TGNEVT SS + E Sbjct: 8 NRSLNPTRGL-NLYSTGNEVTWFSSTVDE 35 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,093,390 Number of Sequences: 5004 Number of extensions: 43100 Number of successful extensions: 132 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 130 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 170285640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -