Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1013
(456 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 30 1.0
SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6) 29 1.8
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 29 2.4
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4) 28 3.2
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0) 27 7.4
SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_57172| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_34802| Best HMM Match : SBP (HMM E-Value=7.9) 27 9.7
SB_19121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 55.6 bits (128), Expect = 2e-08
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = +1
Query: 22 SVKVHPVVLFQIVDAYERRN--ADSHRVIGTLLGTSDKGVVEVTNCFCVPHKE-HADQVE 192
+V VHP+VL +VD + R RV+G LLG+ KGV++V NCF VP E DQ
Sbjct: 10 TVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFDEDDRDQNV 69
Query: 193 --AELNYAMDVYELNRRVN 243
+ +Y ++Y + ++VN
Sbjct: 70 WFLDHDYLENMYAMFKKVN 88
>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 25 VKVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVP-HKEHADQVEAEL 201
V+V + + +I+ E + V G LLG +E+TNCF P +K D+ + ++
Sbjct: 18 VQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDDV 77
Query: 202 NYAMDVYELNRRVNSSESIVGWW 270
NY M+V R VN VGW+
Sbjct: 78 NYQMEVMRRLRAVNIDHLHVGWY 100
>SB_36852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 31.5 bits (68), Expect = 0.34
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 187 VEAELNYAMDVYELNRRVNSSESIVG 264
V EL YA +YEL+++ N +E IVG
Sbjct: 1 VAVELEYAKSMYELSQKANPNEQIVG 26
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 18 Y*CKGPSCCFISNCGRIRTSKCRF 89
Y C+G + CFI R R KCRF
Sbjct: 76 YTCRGSNDCFIDKVHRNRCQKCRF 99
>SB_29584| Best HMM Match : DUF1106 (HMM E-Value=8.6)
Length = 219
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 256 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 77
Y+ + CS + PSR +P R R + +R+ W++ +CR P R L ++F
Sbjct: 36 YYNYRHVRCSRSREPSR--IPKRFLRRIHNKSRKLRWVVYHRICRKIP-RSSNLHNYINF 92
Query: 76 DVRMRPQFEIK 44
R F+ K
Sbjct: 93 GRLRRRYFDSK 103
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 6 NGSQY*CKGPSCCFISNCGRIRTSKCRFSQ 95
N + Y C+G + C I R R CRF +
Sbjct: 87 NNTNYTCRGQNTCAIDRNSRSRCPSCRFQK 116
>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.3 bits (60), Expect = 3.2
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -3
Query: 256 YFQRN*LFCSARKHPSRN*VPLRLDRHVLCVARRSSWLLPPLLCRSCPIRCR*LCENLHF 77
Y+ + CS + PSR +P R R + +R+ W++ +CR+ P R L ++F
Sbjct: 90 YYNYRHVRCSRSREPSR--IPKRFLRRLHNKSRKLRWVVYHRICRNIP-RSSNLHNYINF 146
Query: 76 D-VRMRP 59
+R RP
Sbjct: 147 GRLRRRP 153
>SB_4183| Best HMM Match : APH_6_hur (HMM E-Value=7.4)
Length = 270
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 351 YSGHFTGWRSNGFTCICL 404
++GH W SNG TC+ L
Sbjct: 201 FNGHTYSWHSNGVTCVLL 218
>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 342 CPCYSGHFTGWRSNGFTCIC 401
CPC +G + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149
>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 342 CPCYSGHFTGWRSNGFTCIC 401
CPC +G + +GFTCIC
Sbjct: 130 CPCKNGGHCVNKVDGFTCIC 149
>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 979
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +1
Query: 133 VVEVTNCFCVPHKEHADQVEAELNYAMDVYELN----RRVNSSESIVG 264
++ + +C + HKEHAD+ E++ A+ ++ LN R + + E VG
Sbjct: 706 IIALNSCRVMLHKEHADE-ESDYINAVFLHRLNSFTSREIPAEEKSVG 752
>SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -1
Query: 300 GVVGYF-IASRPPTNNTFRG-IDSSVQLVNIHRVIKFRFDLIGMFF--VWHAEAVGYFHH 133
GV+ Y R P ++TF G + V + + I D G + V+H + VG+FHH
Sbjct: 28 GVLDYTDYVLRGPFHDTFLGPFEPCVAQEGVFQNITCVLDEDGFYVNGVFHCKEVGFFHH 87
Query: 132 S 130
+
Sbjct: 88 N 88
>SB_57172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -1
Query: 300 GVVGYF-IASRPPTNNTFRG-IDSSVQLVNIHRVIKFRFDLIGMFF--VWHAEAVGYFHH 133
GV+ Y R P ++TF G + V + + I D G + V+H + VG+FHH
Sbjct: 4 GVLDYTNYVLRGPFHDTFLGPFEPCVAQEGVFQNITCILDEDGFYVNGVFHCKEVGFFHH 63
Query: 132 S 130
+
Sbjct: 64 N 64
>SB_34802| Best HMM Match : SBP (HMM E-Value=7.9)
Length = 283
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -1
Query: 300 GVVGYF-IASRPPTNNTFRG-IDSSVQLVNIHRVIKFRFDLIGMFF--VWHAEAVGYFHH 133
GV+ Y R P ++TF G + V + + I D G + V+H + VG+FHH
Sbjct: 4 GVLDYTNYVLRGPFHDTFLGPFEPCVAQEGVFQNITCILDEDGFYVNGVFHCKEVGFFHH 63
Query: 132 S 130
+
Sbjct: 64 N 64
>SB_19121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 437 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTGSRHS 327
P FPF T G + AR+ PPA+ S T T ++HS
Sbjct: 148 PQFPFFT--GRKAGARRVGTPPANLASNPTSTTTQHS 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,314
Number of Sequences: 59808
Number of extensions: 347554
Number of successful extensions: 1330
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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