BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1013 (456 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 94 5e-20 AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 69 2e-12 Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 30 0.92 AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical ... 29 1.2 Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical pr... 28 3.7 Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical pr... 27 4.9 U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 27 4.9 U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 27 4.9 AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin monoox... 27 4.9 AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 27 4.9 AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 27 4.9 AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical ... 27 4.9 Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 27 8.6 AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 27 8.6 >Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical protein D2013.7 protein. Length = 294 Score = 93.9 bits (223), Expect = 5e-20 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 20/170 (11%) Frame = +1 Query: 7 MALNISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPH 168 MA N++V VHP V +VD + RR N + +GTL+G +KG ++VTNCF +P Sbjct: 1 MASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPF 60 Query: 169 KEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECRE--- 339 E D +E + + + ++ + +E VGW+ T +++T+ + H+YY R E Sbjct: 61 NESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASA 120 Query: 340 -----PVHV-TLDTSLAGG---RMGLRAYVCVPLGVPN--GKQGCMFTPV 456 P+ V T+DT+ +G RM +RAY+ G+P G +F P+ Sbjct: 121 RRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPL 170 >AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome regulatory particle,non-atpase-like protein 8 protein. Length = 362 Score = 68.9 bits (161), Expect = 2e-12 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%) Frame = +1 Query: 25 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 195 V VHP+VL +VD + R + RV+G LLG+ K +++ N F VP E Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100 Query: 196 ---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS 366 +++Y +Y + +V + E IVGW+ TG ++ + I+E R C PV V +D Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAE 160 Query: 367 LAGGRMGLRAYV 402 + AY+ Sbjct: 161 PKNIGLPTEAYI 172 >Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical protein F36H1.9 protein. Length = 160 Score = 29.9 bits (64), Expect = 0.92 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 149 TASACHTKNMPIKSKRNLITRWMFTS 226 T ACHT M + K+N IT W +++ Sbjct: 55 TLVACHTLQMFLAEKKNTITHWKYST 80 >AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical protein Y67H2A.6 protein. Length = 426 Score = 29.5 bits (63), Expect = 1.2 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%) Frame = +1 Query: 25 VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCFC--VPHKEHADQ 186 V +HP+V+ Q+ + Y R +V G +LG + VE N F + +E A+ Sbjct: 14 VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEP 73 Query: 187 VEAELNYAMDVYELNRRVNSSESIVGWWATGNE 285 V + + + V ++G + G + Sbjct: 74 VTFSTEHLLQRADQYLEVFPELQVIGLYCAGED 106 >Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical protein F01D5.1 protein. Length = 178 Score = 27.9 bits (59), Expect = 3.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -3 Query: 136 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 35 PLL SCP+ C+ LC + P F+ K D Sbjct: 44 PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76 >Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical protein K08C7.5 protein. Length = 529 Score = 27.5 bits (58), Expect = 4.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 190 RLDRHVLCVARRSSWLLPPLLCRSCP 113 R+ + V V RR +WL+P L R P Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230 >U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding protein LAG-1 protein. Length = 673 Score = 27.5 bits (58), Expect = 4.9 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = +2 Query: 113 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265 W AT + + H P+ RN T WMFT+ T + + + LV Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643 >U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. Length = 673 Score = 27.5 bits (58), Expect = 4.9 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = +2 Query: 113 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265 W AT + + H P+ RN T WMFT+ T + + + LV Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643 >AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin monooxygenase protein. Length = 529 Score = 27.5 bits (58), Expect = 4.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 190 RLDRHVLCVARRSSWLLPPLLCRSCP 113 R+ + V V RR +WL+P L R P Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230 >AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1 phenotype protein1, isoform b protein. Length = 671 Score = 27.5 bits (58), Expect = 4.9 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = +2 Query: 113 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265 W AT + + H P+ RN T WMFT+ T + + + LV Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641 >AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1 phenotype protein1, isoform a protein. Length = 673 Score = 27.5 bits (58), Expect = 4.9 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = +2 Query: 113 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265 W AT + + H P+ RN T WMFT+ T + + + LV Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643 >AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical protein T04D1.2 protein. Length = 381 Score = 27.5 bits (58), Expect = 4.9 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +2 Query: 44 FYFKLWTHTNVEMQILTELSAPYWARA 124 FY +W+ T V + LT YW R+ Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144 >Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical protein ZK829.4 protein. Length = 536 Score = 26.6 bits (56), Expect = 8.6 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +1 Query: 124 DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYE 225 D G EV + H EH + + Y++DV E Sbjct: 103 DNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCE 136 >AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical protein Y39G8B.7 protein. Length = 179 Score = 26.6 bits (56), Expect = 8.6 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 142 LPPLLCRSCPIRCR*LCENLHFDVRMRPQFEIK 44 L PLL +SCP+ C LC + + P F+ K Sbjct: 43 LLPLLTQSCPVTCN-LCPSTVSPTTLAPCFDDK 74 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,775,470 Number of Sequences: 27780 Number of extensions: 252873 Number of successful extensions: 634 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 611 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 633 length of database: 12,740,198 effective HSP length: 75 effective length of database: 10,656,698 effective search space used: 809909048 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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