Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1013
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    94   5e-20
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    69   2e-12
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    30   0.92 
AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding pro...    27   4.9  
U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.        27   4.9  
AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin monoox...    27   4.9  
AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and gl...    27   4.9  
AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and gl...    27   4.9  
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 93.9 bits (223), Expect = 5e-20
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 20/170 (11%)
 Frame = +1

Query: 7   MALNISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPH 168
           MA N++V VHP V   +VD + RR      N    + +GTL+G  +KG ++VTNCF +P 
Sbjct: 1   MASNLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPF 60

Query: 169 KEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECRE--- 339
            E  D +E +  +   +    ++ + +E  VGW+ T +++T+   + H+YY R   E   
Sbjct: 61  NESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLTTSDITSSCLIYHDYYVRVITEASA 120

Query: 340 -----PVHV-TLDTSLAGG---RMGLRAYVCVPLGVPN--GKQGCMFTPV 456
                P+ V T+DT+ +G    RM +RAY+    G+P   G    +F P+
Sbjct: 121 RRESPPIVVLTIDTTFSGDMSKRMPVRAYLRSKAGIPGAAGPHCAIFNPL 170


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
 Frame = +1

Query: 25  VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 195
           V VHP+VL  +VD + R  +     RV+G LLG+  K   +++ N F VP  E       
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 196 ---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS 366
              +++Y   +Y +  +V + E IVGW+ TG ++  +   I+E   R C  PV V +D  
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAE 160

Query: 367 LAGGRMGLRAYV 402
                +   AY+
Sbjct: 161 PKNIGLPTEAYI 172


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 149 TASACHTKNMPIKSKRNLITRWMFTS 226
           T  ACHT  M +  K+N IT W +++
Sbjct: 55  TLVACHTLQMFLAEKKNTITHWKYST 80


>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
 Frame = +1

Query: 25  VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCFC--VPHKEHADQ 186
           V +HP+V+ Q+ + Y R          +V G +LG  +   VE  N F   +  +E A+ 
Sbjct: 14  VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEP 73

Query: 187 VEAELNYAMDVYELNRRVNSSESIVGWWATGNE 285
           V     + +   +    V     ++G +  G +
Sbjct: 74  VTFSTEHLLQRADQYLEVFPELQVIGLYCAGED 106


>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 136 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 35
           PLL  SCP+ C+ LC        + P F+ K  D
Sbjct: 44  PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76


>Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical
           protein K08C7.5 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 190 RLDRHVLCVARRSSWLLPPLLCRSCP 113
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>U49795-1|AAB03859.1|  673|Caenorhabditis elegans DNA-binding
           protein LAG-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 113 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>U49794-1|AAB03858.1|  673|Caenorhabditis elegans lag-1 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 113 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 190 RLDRHVLCVARRSSWLLPPLLCRSCP 113
           R+ + V  V RR +WL+P L  R  P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230


>AF100663-8|AAM98006.1|  671|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform b protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 113 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641


>AF100663-7|AAC68978.3|  673|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein1, isoform a protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 113 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265
           W  AT       +  + H    P+   RN  T WMFT+ T   + + + LV
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 44  FYFKLWTHTNVEMQILTELSAPYWARA 124
           FY  +W+ T V  + LT     YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144


>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 124 DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYE 225
           D G  EV   +   H EH    +  + Y++DV E
Sbjct: 103 DNGEFEVIEAWRAQHSEHRTPTKGGIRYSLDVCE 136


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 142 LPPLLCRSCPIRCR*LCENLHFDVRMRPQFEIK 44
           L PLL +SCP+ C  LC +      + P F+ K
Sbjct: 43  LLPLLTQSCPVTCN-LCPSTVSPTTLAPCFDDK 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,775,470
Number of Sequences: 27780
Number of extensions: 252873
Number of successful extensions: 634
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)