BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1013 (456 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 23 1.2 AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 23 1.2 EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 1.6 EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 2.1 AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 2.7 DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 22 3.6 AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 21 4.8 EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3 EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.3 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.3 AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 6.3 >AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein protein. Length = 427 Score = 23.4 bits (48), Expect = 1.2 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Frame = +3 Query: 18 Y*CKGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 167 Y C+ C I R R CR+ + R + ERQR+ +Q + +T Sbjct: 144 YACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198 >AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein protein. Length = 427 Score = 23.4 bits (48), Expect = 1.2 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Frame = +3 Query: 18 Y*CKGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 167 Y C+ C I R R CR+ + R + ERQR+ +Q + +T Sbjct: 144 YACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198 >EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. Length = 686 Score = 23.0 bits (47), Expect = 1.6 Identities = 15/86 (17%), Positives = 34/86 (39%) Frame = +1 Query: 28 KVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNY 207 +++P F E +N R + G ++ V + + + E +L+Y Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMREYNDPEYKLDY 223 Query: 208 AMDVYELNRRVNSSESIVGWWATGNE 285 M+ ELN ++ +W + ++ Sbjct: 224 FMEDVELNAYYYYMREMLPYWMSSSQ 249 >EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. Length = 686 Score = 22.6 bits (46), Expect = 2.1 Identities = 15/86 (17%), Positives = 34/86 (39%) Frame = +1 Query: 28 KVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNY 207 +++P F E +N R + G ++ V + + + E +L+Y Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKNMREYNDPEYKLDY 223 Query: 208 AMDVYELNRRVNSSESIVGWWATGNE 285 M+ ELN ++ +W + ++ Sbjct: 224 FMEDVELNAYYYYMREMLPYWMSSSQ 249 >AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic acetylcholine Apisa7-2 subunit protein. Length = 461 Score = 22.2 bits (45), Expect = 2.7 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = -3 Query: 160 RRSSWLLPPLLCRSCPIRCR 101 RRS + PP +CP+ C+ Sbjct: 333 RRSEPVEPPRRKNNCPLHCK 352 >DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor protein. Length = 405 Score = 21.8 bits (44), Expect = 3.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +1 Query: 202 NYAMDVYELNRRVNSSE 252 NY DVY+ N V+S E Sbjct: 7 NYYGDVYQWNHTVSSGE 23 >AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. Length = 996 Score = 21.4 bits (43), Expect = 4.8 Identities = 10/30 (33%), Positives = 14/30 (46%) Frame = +1 Query: 238 VNSSESIVGWWATGNEVTNHSSVIHEYYSR 327 V SSE + W A E+ S ++ Y R Sbjct: 430 VKSSELSISWDAPITEIGGDSDLVERYEVR 459 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 21.0 bits (42), Expect = 6.3 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 344 SMLLWTLHWLEVEWV 388 + +L T WL++EWV Sbjct: 30 NQILTTNAWLKLEWV 44 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 21.0 bits (42), Expect = 6.3 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 344 SMLLWTLHWLEVEWV 388 + +L T WL++EWV Sbjct: 30 NQILTTNAWLKLEWV 44 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 21.0 bits (42), Expect = 6.3 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 344 SMLLWTLHWLEVEWV 388 + +L T WL++EWV Sbjct: 30 NQILTTNAWLKLEWV 44 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 21.0 bits (42), Expect = 6.3 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 344 SMLLWTLHWLEVEWV 388 + +L T WL++EWV Sbjct: 30 NQILTTNAWLKLEWV 44 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 21.0 bits (42), Expect = 6.3 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 344 SMLLWTLHWLEVEWV 388 + +L T WL++EWV Sbjct: 30 NQILTTNAWLKLEWV 44 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 21.0 bits (42), Expect = 6.3 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 344 SMLLWTLHWLEVEWV 388 + +L T WL++EWV Sbjct: 30 NQILTTNAWLKLEWV 44 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 21.0 bits (42), Expect = 6.3 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 344 SMLLWTLHWLEVEWV 388 + +L T WL++EWV Sbjct: 98 NQILTTNAWLKLEWV 112 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 21.0 bits (42), Expect = 6.3 Identities = 7/15 (46%), Positives = 11/15 (73%) Frame = +2 Query: 344 SMLLWTLHWLEVEWV 388 + +L T WL++EWV Sbjct: 98 NQILTTNAWLKLEWV 112 >AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic acetylcholine receptoralpha7-1 protein. Length = 555 Score = 21.0 bits (42), Expect = 6.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +2 Query: 344 SMLLWTLHWLEVEWVYVHM 400 + LL T WL++EW V+M Sbjct: 67 NQLLITNLWLKLEWNDVNM 85 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 142,174 Number of Sequences: 438 Number of extensions: 3072 Number of successful extensions: 19 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 17 length of database: 146,343 effective HSP length: 53 effective length of database: 123,129 effective search space used: 12066642 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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