Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1013
(456 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 23 1.2
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 23 1.2
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 1.6
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 2.1
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 2.7
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 22 3.6
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 21 4.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 6.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 6.3
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 23.4 bits (48), Expect = 1.2
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = +3
Query: 18 Y*CKGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 167
Y C+ C I R R CR+ + R + ERQR+ +Q + +T
Sbjct: 144 YACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 23.4 bits (48), Expect = 1.2
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = +3
Query: 18 Y*CKGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 167
Y C+ C I R R CR+ + R + ERQR+ +Q + +T
Sbjct: 144 YACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 23.0 bits (47), Expect = 1.6
Identities = 15/86 (17%), Positives = 34/86 (39%)
Frame = +1
Query: 28 KVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNY 207
+++P F E +N R + G ++ V + + + E +L+Y
Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKYMREYNDPEYKLDY 223
Query: 208 AMDVYELNRRVNSSESIVGWWATGNE 285
M+ ELN ++ +W + ++
Sbjct: 224 FMEDVELNAYYYYMREMLPYWMSSSQ 249
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.6 bits (46), Expect = 2.1
Identities = 15/86 (17%), Positives = 34/86 (39%)
Frame = +1
Query: 28 KVHPVVLFQIVDAYERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNY 207
+++P F E +N R + G ++ V + + + E +L+Y
Sbjct: 164 EIYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYIVNTNYSSKNMREYNDPEYKLDY 223
Query: 208 AMDVYELNRRVNSSESIVGWWATGNE 285
M+ ELN ++ +W + ++
Sbjct: 224 FMEDVELNAYYYYMREMLPYWMSSSQ 249
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.2 bits (45), Expect = 2.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 160 RRSSWLLPPLLCRSCPIRCR 101
RRS + PP +CP+ C+
Sbjct: 333 RRSEPVEPPRRKNNCPLHCK 352
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 21.8 bits (44), Expect = 3.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 202 NYAMDVYELNRRVNSSE 252
NY DVY+ N V+S E
Sbjct: 7 NYYGDVYQWNHTVSSGE 23
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.4 bits (43), Expect = 4.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 238 VNSSESIVGWWATGNEVTNHSSVIHEYYSR 327
V SSE + W A E+ S ++ Y R
Sbjct: 430 VKSSELSISWDAPITEIGGDSDLVERYEVR 459
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWV 388
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWV 388
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWV 388
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWV 388
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWV 388
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWV 388
+ +L T WL++EWV
Sbjct: 30 NQILTTNAWLKLEWV 44
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWV 388
+ +L T WL++EWV
Sbjct: 98 NQILTTNAWLKLEWV 112
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 6.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWV 388
+ +L T WL++EWV
Sbjct: 98 NQILTTNAWLKLEWV 112
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 6.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 344 SMLLWTLHWLEVEWVYVHM 400
+ LL T WL++EW V+M
Sbjct: 67 NQLLITNLWLKLEWNDVNM 85
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,174
Number of Sequences: 438
Number of extensions: 3072
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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