Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1013
(456 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 122 2e-28
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 86 9e-18
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 85 2e-17
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 49 2e-06
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 38 0.004
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 36 0.017
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.65
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.65
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 29 1.5
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 3.4
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 3.4
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 3.4
At5g65100.1 68418.m08189 ethylene insensitive 3 family protein c... 27 7.9
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 27 7.9
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 27 7.9
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 122 bits (293), Expect = 2e-28
Identities = 52/129 (40%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Frame = +1
Query: 19 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 195
++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 196 ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAG 375
+++Y ++ + +VNS E+IVGW++TG V SS+IH++Y+RE P+H+T+DT
Sbjct: 86 DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTN 145
Query: 376 GRMGLRAYV 402
G ++A+V
Sbjct: 146 GEGTIKAFV 154
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 86.2 bits (204), Expect = 9e-18
Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 4/132 (3%)
Frame = +1
Query: 25 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 195
V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 196 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 372
+ NY ++ + +R+N+ E +VGW++TG ++ + +H ++ PV V +D
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPK 136
Query: 373 GGRMGLRAYVCV 408
+ +AY V
Sbjct: 137 ELGIPTKAYYAV 148
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 85.4 bits (202), Expect = 2e-17
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
Frame = +1
Query: 25 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA-- 195
V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76
Query: 196 -ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLA 372
+ NY ++ + +R+N+ E IVGW++TG ++ + +H ++ PV V +D
Sbjct: 77 LDHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPK 136
Query: 373 GGRMGLRAYVCV 408
+ +AY V
Sbjct: 137 ELGIPTKAYYAV 148
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 97 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWW 270
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW+
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/92 (25%), Positives = 44/92 (47%)
Frame = +1
Query: 94 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWA 273
RV G ++G VE+ N F + D ++ ++ EL ++V ++GW++
Sbjct: 57 RVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDR--SFLEKKQELYKKVFPDFYVLGWYS 114
Query: 274 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 369
TG++ T IH+ PV+V L+ ++
Sbjct: 115 TGSDATESDMHIHKALMDINESPVYVLLNPAI 146
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 35.5 bits (78), Expect = 0.017
Identities = 22/92 (23%), Positives = 43/92 (46%)
Frame = +1
Query: 94 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWA 273
RV G ++G VE+ N F + + ++ ++ EL ++V I+GW++
Sbjct: 57 RVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDR--SFLEKKQELYKKVFPDFYILGWYS 114
Query: 274 TGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 369
TG++ IH+ PV+V L+ ++
Sbjct: 115 TGSDAEESDMHIHKALMDINESPVYVLLNPAI 146
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 240 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 136
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 240 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 136
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -1
Query: 300 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 196
G+V + ++S+PP F+ +++ Q+V + + +KF
Sbjct: 436 GIVNWKVSSKPPIKLPFKKVENCNQVVKLGKQLKF 470
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 308 YTSITPVNAVSLSMLL 355
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 308 YTSITPVNAVSLSMLL 355
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 308 YTSITPVNAVSLSMLL 355
YT++ PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At5g65100.1 68418.m08189 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 557
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 98 LSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRW 214
L+ P+W T+ WW A+A P + +L W
Sbjct: 215 LAPPWWPNGTELWWGEQGAAAFEHGPPPYRKPHDLRKAW 253
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 166 HKEHADQVEAEL-NYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEY 318
H + +V L NY + Y+L + ++G W +N +++ +Y
Sbjct: 3125 HAQGRHEVSISLANYILHNYQLKEEASDIYRVIGKWLAETRSSNSRTILEKY 3176
>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
Length = 485
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 240 DSSVQLVNIHRVIKFRFDLIGMFFVW 163
D++V L+ IH+ I F F ++FVW
Sbjct: 312 DAAVILMLIHQFITFGFACTPLYFVW 337
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,137
Number of Sequences: 28952
Number of extensions: 233581
Number of successful extensions: 658
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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