Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1011
(466 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 73 2e-13
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 71 5e-13
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 58 5e-09
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 56 2e-08
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 55 3e-08
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 53 1e-07
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 53 1e-07
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 9e-06
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 37 0.009
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 33 0.088
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 31 0.36
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 31 0.36
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18) 29 1.4
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 29 1.9
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12) 28 4.4
SB_30044| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQ----AWTALY 351
TPY G++++ + +P+ YPF+ P + F+ +YHPNID SG +CLD + W
Sbjct: 8 TPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDS-SGRICLDTLKMPPKGMWKPAL 66
Query: 352 DLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
++S++ + L L+ PNP DPL + + + + ++
Sbjct: 67 NISSVLSTIL-ILMAEPNPDDPLMAEISNEFKYNKAQF 103
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 70.9 bits (166), Expect = 5e-13
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +1
Query: 178 QVTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVIN-QAWTALYD 354
++ PY G +R+ + P YPFK P I F K+YHPNIDE G VCL +I+ + W
Sbjct: 33 EMPPYNKGAFRIEICFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPIISPENWKPATK 91
Query: 355 LSNIFESFLPQLLTYPNPIDPLNGDAAAMY 444
+ ++ L L+ P P PL D A Y
Sbjct: 92 TEQVIQALL-ALVHDPEPEHPLRADLAEEY 120
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 57.6 bits (133), Expect = 5e-09
Identities = 33/92 (35%), Positives = 45/92 (48%)
Frame = +1
Query: 190 YEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSNIF 369
YEGGV+ + +H P YPFK P G VCLD++ +W+ +S +
Sbjct: 139 YEGGVFFLDIHFPSDYPFKPPK----------------GMVCLDILKDSWSPALTISKVL 182
Query: 370 ESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
S LLT NP DPL G AA+Y+ E+
Sbjct: 183 LSIC-SLLTDCNPADPLVGSIAALYVQNRSEH 213
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 55.6 bits (128), Expect = 2e-08
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +1
Query: 172 DLQVTP----YEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAW 339
+LQ+TP Y GG ++ V D YP +PSI K+YHPN+D G VC+ +++ W
Sbjct: 40 ELQITPTDGAYRGGQFKFSVRTTD-YPNVAPSINCKTKIYHPNMDGYDG-VCMSLLDD-W 96
Query: 340 TALYDLSNIFESFLPQLLTYPNPIDPLN 423
A DL ++ + L L PN DPL+
Sbjct: 97 QASNDLEDLVQGLL-FLFYNPNLEDPLS 123
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 55.2 bits (127), Expect = 3e-08
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVI------------ 327
T Y GG ++ + P YP+ P+ F+ K++HPNI E SG VC+ ++
Sbjct: 1167 TLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYE-SGDVCISILHPPVDDPQSGEL 1225
Query: 328 -NQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMY 444
++ W ++ I S + LL PN P N DA+ M+
Sbjct: 1226 PSERWNPTQNVRTILLSVI-SLLNEPNTFSPANVDASVMF 1264
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +1
Query: 238 PFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQ----AWTALYDLSNIFESFLPQLLTYPN 405
PF+ P + F+ +YHPNID SG +CLD + W ++S++ + L L+ PN
Sbjct: 40 PFEPPKVRFVTPIYHPNIDS-SGRICLDTLKMPPKGMWKPALNISSVLSTIL-ILMAEPN 97
Query: 406 PIDPLNGDAAAMYLHKPEEY 465
P DPL + + + + ++
Sbjct: 98 PDDPLMAEISNEFKYNKAQF 117
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 52.8 bits (121), Expect = 1e-07
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +1
Query: 172 DLQVTP----YEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAW 339
+LQ+TP Y GG ++ V D YP P +N +YHPN+D G+VCL +++ W
Sbjct: 40 ELQITPTDGAYRGGQFKFSVKTED-YPNTPPVPRCVNNIYHPNMDLDDGSVCLSLLDD-W 97
Query: 340 TALYDLSNIFESFLPQLLTYPNPIDPLN 423
DL ++ + L L PN DPL+
Sbjct: 98 NESNDLEDLVQGLL-FLFYNPNLEDPLS 124
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 52.8 bits (121), Expect = 1e-07
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSI 258
TPYEGGVW+VRV LP+ YPFKSPSI
Sbjct: 60 TPYEGGVWKVRVDLPEKYPFKSPSI 84
Score = 51.2 bits (117), Expect = 4e-07
Identities = 24/31 (77%), Positives = 24/31 (77%)
Frame = +3
Query: 90 TDVIKLIESKHEVTILSGLNEFCVKFFGPPG 182
TD IESKHEVTIL GLNEF VKFFGP G
Sbjct: 29 TDSFGRIESKHEVTILGGLNEFIVKFFGPVG 59
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 46.8 bits (106), Expect = 9e-06
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVI------------ 327
T YE G ++ + P YP + P++ F++ ++HPN+ + +G VC+ ++
Sbjct: 375 TYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPNVHK-NGEVCISILHEPGEDKYGYEK 433
Query: 328 -NQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYL 447
++ W ++ + I S + +L PN P N DAA L
Sbjct: 434 ADERWRPIHTVETIMLSVI-SMLAEPNDESPANVDAAVSSL 473
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = +1
Query: 262 FMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAM 441
F+ K++HPN+ + +G +C++ + + W + + + + LL PNP LN +A +
Sbjct: 147 FLTKIFHPNVAK-NGEICVNTLKKDWKPDLGIKQVLLT-VKCLLIVPNPESALNEEAGKL 204
Query: 442 YLHKPEEY 465
L + ++Y
Sbjct: 205 LLERYDDY 212
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 36.7 bits (81), Expect = 0.009
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 190 YEGGVWRVRVHLPDHYPFKSPSIG 261
YEGGV+ + +H P YPFK P +G
Sbjct: 66 YEGGVFFLDIHFPTDYPFKPPKVG 89
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 35.5 bits (78), Expect = 0.022
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNK-----VYHPNIDEVSGTVCL----DVINQA 336
TPYEGG + + P YP + P + M ++PN+ +G VCL DV+ ++
Sbjct: 23 TPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYR-NGKVCLSIIGDVMEKS 81
Query: 337 WTALYD 354
+ YD
Sbjct: 82 FPEFYD 87
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 33.5 bits (73), Expect = 0.088
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 190 YEGGVWRVRVHLPDHYPFKSP 252
YEGGV+ + +H P YPFK P
Sbjct: 179 YEGGVFFLDIHFPSDYPFKPP 199
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFM---NKVYHPNIDEVSGTVCL 318
TPY+ G++ + LP +YP PS ++ N +PN+ E G VC+
Sbjct: 646 TPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYE-DGKVCI 692
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 31.5 bits (68), Expect = 0.36
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSP 252
TP+EGG + + + +P+ YPF P
Sbjct: 699 TPFEGGTYNLDIVIPETYPFNPP 721
>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
Length = 865
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 93 DVIKLIESKHEVT-ILSGLNEFCVKFFG--PPGNAIRRWCVESTRAPSRSLPLQVS 251
+++++ E+K VT SG+ + K G PP + R+ + TR+P R +PLQ S
Sbjct: 239 EILQIQENKARVTRYYSGVTRYFRKLLGNIPP---VPRYYIRVTRSPVRIIPLQHS 291
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSI 258
T + GG + R+ LP YP K PSI
Sbjct: 51 TEFAGGRYHGRIILPPEYPMKPPSI 75
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSI 258
T + GG + R+ LP YP K PSI
Sbjct: 16 TEFAGGRYHGRIILPPEYPMKPPSI 40
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +3
Query: 75 NDAWHTDVIKLIESKHEVTILSGLNEFCVKFFGPPGNAIRRW 200
+DAWHTD+I L SKH T L E C P N W
Sbjct: 10 DDAWHTDLI-LALSKHNDT--ERLRELCRSRTIPAENRADIW 48
>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
Length = 697
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Frame = -3
Query: 215 RTLHTPP-------SYGVTWRSEEFHAEL 150
R LH PP YG+TWRS + H E+
Sbjct: 366 RMLHGPPVVDGKWHHYGITWRSNDGHVEI 394
>SB_30044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 42 YHEACRHRALGNDAWHTDVIKL 107
Y E C H+ALGND+ +D+ ++
Sbjct: 822 YDEFCAHQALGNDSQLSDLSRI 843
>SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 202 VWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDE 297
++R + L +++P P + F + V+HP I E
Sbjct: 107 LFREQFILAEYFPDSRPLVKFTSNVFHPQIHE 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,823
Number of Sequences: 59808
Number of extensions: 346890
Number of successful extensions: 765
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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