Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1011
(466 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 180 3e-46
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 86 1e-17
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 86 1e-17
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 84 5e-17
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 83 1e-16
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 81 3e-16
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 81 3e-16
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 72 2e-13
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 65 2e-11
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 64 6e-11
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 58 2e-09
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 58 2e-09
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 58 4e-09
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 55 2e-08
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 54 5e-08
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 45 2e-05
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 42 3e-04
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 41 4e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 38 0.005
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 35 0.033
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 34 0.044
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 34 0.058
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 31 0.54
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 30 0.94
AY305846-1|AAR11990.1| 404|Caenorhabditis elegans nuclear recep... 27 5.0
AF016438-11|AAK84530.2| 404|Caenorhabditis elegans Nuclear horm... 27 5.0
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 8.8
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 27 8.8
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 180 bits (439), Expect = 3e-46
Identities = 75/94 (79%), Positives = 86/94 (91%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSN 363
T YE GVWR+RV +PD YPFKSPSIGF+NK++HPNIDE SGTVCLDVINQAWTALYDL+N
Sbjct: 45 TAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALYDLTN 104
Query: 364 IFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
IF++FLPQLLTYPN DPLNG+AA +Y+HKPEEY
Sbjct: 105 IFDTFLPQLLTYPNAADPLNGEAARLYIHKPEEY 138
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 66 ALGNDAWHTDVIKLIESKHEVTILSGLNEFCVKFFGPPGNA 188
A+G DV+KLI HEV I++G +EF V+F GP A
Sbjct: 6 AIGKRRIDCDVVKLISHNHEVQIVNGCSEFIVRFHGPKDTA 46
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/94 (39%), Positives = 57/94 (60%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSN 363
+PY+GGV+ + +H P YPFK P + F ++YHPNI+ +G++CLD++ W+ +S
Sbjct: 43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISK 101
Query: 364 IFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ S + LL PNP DPL + A +Y E Y
Sbjct: 102 VLLS-ICSLLCDPNPDDPLVPEIARIYKTDRERY 134
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 85.8 bits (203), Expect = 1e-17
Identities = 37/94 (39%), Positives = 57/94 (60%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSN 363
+PY+GGV+ + +H P YPFK P + F ++YHPNI+ +G++CLD++ W+ +S
Sbjct: 43 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISK 101
Query: 364 IFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ S + LL PNP DPL + A +Y E Y
Sbjct: 102 VLLS-ICSLLCDPNPDDPLVPEIARIYKTDRERY 134
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 83.8 bits (198), Expect = 5e-17
Identities = 33/91 (36%), Positives = 52/91 (57%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSN 363
TPY GG++ + + +PD YPF P++ F K++HPN+ +G +CLD++ W A L
Sbjct: 49 TPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLTLRT 108
Query: 364 IFESFLPQLLTYPNPIDPLNGDAAAMYLHKP 456
+ S + L+ P P DP + A Y+ KP
Sbjct: 109 VLLS-IQALMCTPEPKDPQDAVVAKQYMEKP 138
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 82.6 bits (195), Expect = 1e-16
Identities = 34/87 (39%), Positives = 55/87 (63%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDLSN 363
+P+ GGV+++ + LP+ YP +P + FM K+YHPNID++ G +CLD++ W+ +
Sbjct: 46 SPFAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNIDKL-GRICLDILKDKWSPALQIRT 104
Query: 364 IFESFLPQLLTYPNPIDPLNGDAAAMY 444
+ S + LL+ PNP DPL D A +
Sbjct: 105 VLLS-IQALLSAPNPEDPLATDVAEQW 130
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 81.4 bits (192), Expect = 3e-16
Identities = 35/96 (36%), Positives = 57/96 (59%)
Frame = +1
Query: 178 QVTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDL 357
Q TP+E G +++ + + YP K P++ F++K++HPN+ G++CLD++ W+ YD+
Sbjct: 44 QETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDV 102
Query: 358 SNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ I S + LL PNP P N AA +Y EY
Sbjct: 103 AAILTS-IQSLLDEPNPNSPANSLAAQLYQENRREY 137
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 81.4 bits (192), Expect = 3e-16
Identities = 35/96 (36%), Positives = 57/96 (59%)
Frame = +1
Query: 178 QVTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWTALYDL 357
Q TP+E G +++ + + YP K P++ F++K++HPN+ G++CLD++ W+ YD+
Sbjct: 44 QETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDV 102
Query: 358 SNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ I S + LL PNP P N AA +Y EY
Sbjct: 103 AAILTS-IQSLLDEPNPNSPANSLAAQLYQENRREY 137
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 72.1 bits (169), Expect = 2e-13
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 15/104 (14%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIG---------------FMNKVYHPNIDEVSGTVCL 318
TPY GG + ++V +P+HYPF+ P + F+ +++HPNI +GT+CL
Sbjct: 63 TPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICL 122
Query: 319 DVINQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLH 450
D++ WTA L + S L +L P P DP + A +++
Sbjct: 123 DILKDKWTASLTLRTVLLS-LQAMLCSPEPSDPQDAVVAKQFIN 165
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Frame = +1
Query: 175 LQVTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCL-DVINQAW---T 342
++ TPYEGG++ + + + + YPFK+P++ F+ K++HP++ GT+CL DV N W
Sbjct: 388 VEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSM 447
Query: 343 ALYDLSNIFESFLPQLLTYPNPID 414
+Y + + +S++ PID
Sbjct: 448 TIYKVLIVIQSWMSN-FNEKEPID 470
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 63.7 bits (148), Expect = 6e-11
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 187 PYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVIN-QAWTALYDLSN 363
PY G ++V + P YPFK P + F K+YHPN+DE G CL ++ + W
Sbjct: 45 PYNKGAFKVGITFPVDYPFKPPKVAFETKIYHPNVDE-EGKFCLPIVTAENWKPATKTEQ 103
Query: 364 IFESFLPQLLTYPNPIDPLNGDAA 435
+ + L L+ P P P+ D A
Sbjct: 104 VMMALL-SLINEPEPSHPIRADVA 126
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 58.4 bits (135), Expect = 2e-09
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVI--NQAWTALYDL 357
T +EGG++R+R+ D +P P F ++HPN+ SGTVCL ++ N+ W +
Sbjct: 51 TIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDENKDWKPSISI 109
Query: 358 SNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ + LL +PN DP +A +Y EY
Sbjct: 110 KQLLIG-IQDLLNHPNIEDPAQAEAYQIYCQNRAEY 144
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 58.4 bits (135), Expect = 2e-09
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVI--NQAWTALYDL 357
T +EGG++R+R+ D +P P F ++HPN+ SGTVCL ++ N+ W +
Sbjct: 51 TIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNV-YPSGTVCLSLLDENKDWKPSISI 109
Query: 358 SNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ + LL +PN DP +A +Y EY
Sbjct: 110 KQLLIG-IQDLLNHPNIEDPAQAEAYQIYCQNRAEY 144
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 57.6 bits (133), Expect = 4e-09
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVIN----------- 330
T Y+GG ++ + P +YP+ PS+ F KV+HPN+ E +G +C+ +++
Sbjct: 52 TLYQGGYFKASIRFPSNYPYSPPSMKFTTKVWHPNVYE-NGDLCISILHSPIDDPQSGEL 110
Query: 331 --QAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMY 444
+ W + I S + LL PN P N DA+ MY
Sbjct: 111 ACERWNPTQSVRTILLSVI-SLLNEPNTSSPANVDASVMY 149
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 55.2 bits (127), Expect = 2e-08
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVIN----------- 330
T YEGG ++ + P YP K P + F+++++HPNID+ G VC+ +++
Sbjct: 46 TLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYER 104
Query: 331 --QAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ W ++ + I S + +LT PN P N DAA M E+
Sbjct: 105 PEERWLPVHTVETILLSVI-SMLTDPNFESPANVDAAKMQRENYAEF 150
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 54.0 bits (124), Expect = 5e-08
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +1
Query: 190 YEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQA-WTALYDLSNI 366
Y+ ++ + + + YPFK P + F + VYHPN+D V+ +C ++ Q W + ++
Sbjct: 57 YKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDV 116
Query: 367 FESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ + LL P+ P+N DAA Y+H E+
Sbjct: 117 LLNLI-VLLNEPDLSRPVNIDAAHDYIHNKVEF 148
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 49.6 bits (113), Expect = 1e-06
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Frame = +1
Query: 172 DLQVTP----YEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQ-- 333
+L VTP Y GG +R ++ +P Y P + + KV+HPNI+E G++CL ++ Q
Sbjct: 62 ELTVTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINE-DGSICLSILRQNS 120
Query: 334 ----AWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
W +L+++ + + D LN AA M+ E +
Sbjct: 121 LDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESF 168
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 45.2 bits (102), Expect = 2e-05
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVI------------ 327
T + GV+ R+ P YP P + F ++HPNI G VC+ ++
Sbjct: 47 TCFANGVFPARITFPQDYPLSPPKMRFTCGIFHPNI-YADGRVCISILHAPGDDPTGYEL 105
Query: 328 -NQAWTALYDLSNIFESFLPQLLTYPNPIDPLNGDAAAMY 444
N+ W+ + + I S + +L PN P N AA M+
Sbjct: 106 SNERWSPVQSIEKILLSVV-SMLAEPNDESPANVSAAKMW 144
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVY--HPNIDEVSGTVCLDVINQAWTALYDL 357
T Y G V+ ++ YPF SP + F+ + HP+I +G +CL +++ WT +
Sbjct: 48 TLYAGEVFMLQFTFGPQYPFNSPEVMFVGETIPAHPHIYS-NGHICLSILSDDWTPALSV 106
Query: 358 SNIFESFLPQLLTYPNPIDPLN 423
++ S L L + P++
Sbjct: 107 QSVCLSILSMLSSSKEKKHPID 128
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 41.1 bits (92), Expect = 4e-04
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQA-WTALYDLS 360
+P+EGG + V V+ +P P F ++HPN+D + G++ L ++ Q W++ L
Sbjct: 81 SPWEGGEYEVSVNF-HKWPIIPPICEFKTPLHHPNVD-LRGSIYLKMLEQEHWSSETSLK 138
Query: 361 NIFESFLPQLLTYPNPIDPLNGDAAAMYLHKPEEY 465
+ + LL P+ N +A Y ++ E Y
Sbjct: 139 KLLRE-ISNLLATPDLTQAANIEAWMEYENQRENY 172
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLD 321
TPYE GV+ V + PD+YP P I F +++ ++ +G V ++
Sbjct: 41 TPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQVHIE 86
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 34.7 bits (76), Expect = 0.033
Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVIN--QAWTALYDL 357
TPYE ++ +++ +YP + P++ F KV+ +++ +G + + + W+ Y +
Sbjct: 51 TPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRNWSNSYMI 110
Query: 358 SNIFESFLPQLL 393
+ E ++
Sbjct: 111 KTVLEDIRKNMM 122
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 34.3 bits (75), Expect = 0.044
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFM-----NKVYHPNIDEVSGTVCLDVI 327
TPY G++ + P YPF P F+ N ++PN+ G +CL ++
Sbjct: 455 TPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYN-DGKICLSIL 506
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 33.9 bits (74), Expect = 0.058
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSI 258
TPYEGG++ ++ P +PFK P+I
Sbjct: 50 TPYEGGIYMGKLLFPKDFPFKPPAI 74
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 30.7 bits (66), Expect = 0.54
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +1
Query: 190 YEGGVWRVRVHLPDHYPFKS--PSIGF-MNKVYHPNIDEVSGTVCLD-VINQAW-TALYD 354
+ GG++R +H+P +P S P + F + ++HP I S +CL+ + W +
Sbjct: 62 FGGGIFRFNIHIPLEFPDASDLPRVIFEQSNLFHPLICTKSKELCLNRSFPEGWKKEKHS 121
Query: 355 LSNIFESFLPQLLTYPNPIDP-LNGDAAAMYLHKPEEY 465
L + +Y D +N +A+ +Y +++
Sbjct: 122 LRRVLVVLQRSFYSYDVDTDKCINPEASVLYKEHRDKF 159
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 29.9 bits (64), Expect = 0.94
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 184 TPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPN-IDEVSGTVCLDV 324
T +EGG++ R+ P YP K P++ + PN E++ VCL +
Sbjct: 51 TDFEGGIYHGRIIFPADYPMKPPNLILLT----PNGRFELNKKVCLSI 94
>AY305846-1|AAR11990.1| 404|Caenorhabditis elegans nuclear receptor
NHR-126 protein.
Length = 404
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 277 YHPNIDEVSGTVCLDVINQAWTALYDLSNIFES 375
Y P E+ +V L+++ +W A L IFE+
Sbjct: 205 YFPEFRELDESVKLEIVKTSWVAWTRLDKIFET 237
>AF016438-11|AAK84530.2| 404|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 126 protein.
Length = 404
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 277 YHPNIDEVSGTVCLDVINQAWTALYDLSNIFES 375
Y P E+ +V L+++ +W A L IFE+
Sbjct: 205 YFPEFRELDESVKLEIVKTSWVAWTRLDKIFET 237
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +1
Query: 232 HYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAWT-----ALYDLSNIFESFLPQLLT 396
HY +KS G MN + H ++ + + L++++ W+ +++ L+ + F + L
Sbjct: 40 HYDYKSAVFGCMNFLTHLDMITMYFVLFLNILHSNWSINILYSVFSLTIVLYLFFCKFL- 98
Query: 397 YPNP 408
PNP
Sbjct: 99 IPNP 102
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 232 HYPFKSPSIGFMNKVYHPNIDEVSGTVCLDVINQAW 339
H P P GF NK+ + N+ + V D++N +
Sbjct: 2017 HIPDSVPRWGFCNKINYANLYNDTTQVFTDILNSGY 2052
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,774
Number of Sequences: 27780
Number of extensions: 238176
Number of successful extensions: 640
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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