Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1011
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   6.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 333 LVDDVKTHGPRHLIYVGVVDLIHETDGRRLEGVMIGKVHAYSPHTTFVWR 184
           +++D+K    RH    G+  L+ ETD   +E ++  K     P     W+
Sbjct: 217 ILEDIKHINTRHNTKNGMKTLLSETDIWEVEQILAKKEIKGVPTYLIKWK 266


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 196 LRMALPGGPKNFTQNSLRP 140
           LRM+  GG +NF+  S  P
Sbjct: 106 LRMSADGGCRNFSTCSSHP 124


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 196 LRMALPGGPKNFTQNSLRP 140
           LRM+  GG +NF+  S  P
Sbjct: 105 LRMSADGGCRNFSTCSSHP 123


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = +1

Query: 175 LQVTPYEGGVWRVRVHLPDHYPFKSPSIGFMNKVYHPN 288
           L  + Y G    +  HLP         +  ++ ++HPN
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPN 404


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 370 QIYSISHKGQSTPG 329
           Q Y + HKG  +PG
Sbjct: 135 QKYRLRHKGDGSPG 148


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 370 QIYSISHKGQSTPG 329
           Q Y + HKG  +PG
Sbjct: 135 QKYRLRHKGDGSPG 148


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 244 KSPSIGFMNKVYHPNID 294
           K P I  +NK+  PNID
Sbjct: 245 KVPIIVAINKIDKPNID 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,848
Number of Sequences: 438
Number of extensions: 2765
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)