Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4L232 Cluster: Putative uncharacterized protein; n=1; ...    35   0.80 
UniRef50_Q8HQ05 Cluster: NADH dehydrogenase subunit 2; n=1; Thri...    35   1.1  
UniRef50_UPI00015B56D2 Cluster: PREDICTED: similar to GA19896-PA...    33   3.2  
UniRef50_A7IXU9 Cluster: Putative uncharacterized protein B774R;...    33   4.3  
UniRef50_Q1Z6E1 Cluster: Transposase, putative; n=1; Photobacter...    31   9.8  
UniRef50_O62359 Cluster: Putative uncharacterized protein; n=1; ...    31   9.8  

>UniRef50_A4L232 Cluster: Putative uncharacterized protein; n=1;
           Gryllus bimaculatus nudivirus|Rep: Putative
           uncharacterized protein - Gryllus bimaculatus nudivirus
          Length = 346

 Score = 35.1 bits (77), Expect = 0.80
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 286 CLCIAKIELLLFEYRFCSLLSNFVEFYANMAKKK*CFGQLLFRHF*VWSTRFISLFS 116
           C+ I   EL +F+Y     +SNF++FY      K CF    F      +  FI  FS
Sbjct: 193 CVIIYCTELKIFDYDILLFISNFIKFYYCSLYNKLCFDPKTFEELQETTFLFIKCFS 249


>UniRef50_Q8HQ05 Cluster: NADH dehydrogenase subunit 2; n=1; Thrips
           imaginis|Rep: NADH dehydrogenase subunit 2 - Thrips
           imaginis (Plague thrips)
          Length = 324

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = -1

Query: 285 VFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLS-----VY 121
           +F  QK+ F  S   S+  CL+S+SFM +W      L S F+ +     + +S     +Y
Sbjct: 4   LFFIQKNLFIISLISSMMICLSSNSFMSMWMSMEINLFS-FIPLISSNQKIMSEKSTMLY 62

Query: 120 FLIHNINE*LY 88
           FLI +I+  ++
Sbjct: 63  FLIQSISSSIF 73


>UniRef50_UPI00015B56D2 Cluster: PREDICTED: similar to GA19896-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           GA19896-PA - Nasonia vitripennis
          Length = 499

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -1

Query: 288 YVFVSQKSNFFYSNTDSVAYCLTSSSFMRI--WQKKNSALVSCFLDIFEFGPQDLSVYFL 115
           +  V ++S FF+SN   + + +    ++ +  W +K +    CFLD++  G + + ++  
Sbjct: 311 FYLVEERSTFFFSNALPMWHTINGGHWLEMEKWVRKLANKKECFLDVWTGGLRTMKIHGK 370

Query: 114 IHNINE 97
           + N+ +
Sbjct: 371 LINLGQ 376


>UniRef50_A7IXU9 Cluster: Putative uncharacterized protein B774R;
           n=2; Chlorovirus|Rep: Putative uncharacterized protein
           B774R - Paramecium bursaria Chlorella virus NY2A
           (PBCV-NY2A)
          Length = 345

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -1

Query: 291 RYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSVYF 118
           ++ F+S KS+F++ N D       SS F++ W      L+    DI +  P ++  Y+
Sbjct: 59  QFYFISTKSSFYFVNNDQFTVVAMSSPFLK-WVGGKQKLID---DIIKHFPNNIDTYY 112


>UniRef50_Q1Z6E1 Cluster: Transposase, putative; n=1; Photobacterium
           profundum 3TCK|Rep: Transposase, putative -
           Photobacterium profundum 3TCK
          Length = 464

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 229 IGYRIGIRIKEVRFLRYKDISTKAIKSASRSR---LSVKGEFMLRFLYSKLFPGK 384
           +GYR G+R  ++  L Y D+    +  + + +   LS KG  + RF  S+   GK
Sbjct: 262 LGYRCGLRTMDIVQLNYADLHNPGVDQSKQFKITLLSSKGNKVRRFTLSRELMGK 316


>UniRef50_O62359 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 397

 Score = 31.5 bits (68), Expect = 9.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 225 LTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSV 124
           +T++ ++  W K N+  VSC + +FEF  + +SV
Sbjct: 58  ITNAQYLVYWMKINTDTVSCLISVFEFNFKLVSV 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,939,457
Number of Sequences: 1657284
Number of extensions: 7494120
Number of successful extensions: 16344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16338
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)