Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    24   0.82 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   1.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.7  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 0.82
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 250 EYRFCSLLSNFVEFYANMAKKK*CFGQLLFRHF*VWST-RFISLFSNS 110
           E  FC+ + + V  + N+ K       L   H  +W T  FI L  +S
Sbjct: 223 ELTFCNKIKHLVNLHKNLVKVAKDHNSLYSLHLLLWITVTFILLVGDS 270


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 137 CGPNSKMSKKQLTKALFFFCHIRIKL 214
           C  NSKM+K  +   LFF  ++ + L
Sbjct: 275 CYYNSKMTKDGVYNTLFFIVYVSLLL 300


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 105 YYELENKLINLVDQTQKC 158
           +  L NK+ NL+D+  +C
Sbjct: 212 HQNLHNKICNLIDEFNEC 229


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 468 DLNDFFCMRLGGPLDGLDSQISQC 397
           D  +  CM  G  +DG++S I  C
Sbjct: 26  DCTETSCMNGGTCIDGINSYICTC 49


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 410 CESKPSRGPPKRIQKK 457
           C+SK  +GP  R Q++
Sbjct: 171 CDSKKKKGPTPRQQEE 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,707
Number of Sequences: 336
Number of extensions: 2156
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)