Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     28   0.63 
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    28   0.83 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   4.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.9  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   5.9  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   5.9  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 25/90 (27%), Positives = 39/90 (43%)
 Frame = -1

Query: 300 CFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSVY 121
           CF   + +SQK+        ++ YC     FM +     SAL+S    +F+F P DL V 
Sbjct: 152 CFR--IIISQKAALVSIGISTLYYCFVQ--FMEV----KSALISYDRSLFKFYPIDLFVL 203

Query: 120 FLIHNINE*LY*HQYRFVNLSQDNCAFRPK 31
            L  +    +      F+N  ++   FR K
Sbjct: 204 LLSQSFICIIAFGVSDFINFQKEERNFRGK 233


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 9   VSNIVVVIWDEKHSCLVKD*QIDIGVNRATR*YYELENKLINLVDQT 149
           +SNI+  +   KH+C+V +    IGV  A +  Y  EN + +L+  T
Sbjct: 100 LSNILEPVITAKHTCIVYNSTGAIGVEEALQRQYP-ENPIFSLITHT 145


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 300  CFS---RYVFVSQKSNFFYSNTDSVAYCLTSSS 211
            CFS   + +F S ++  FYS   S+  CLT+ +
Sbjct: 1007 CFSLKAKEIFCSLQNEDFYSELQSIIKCLTNEN 1039


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 408  FVNLNHPGGHPNAYKKNHSNR 470
            F N N   G P+ Y +NH  R
Sbjct: 2370 FPNRNESDGFPHIYSRNHDKR 2390


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 308 VPRALDYRLRESLCYVFY 361
           +P ALD+    SLCY  Y
Sbjct: 236 IPNALDFLFMPSLCYQLY 253


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 252 SNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFE 148
           +N+DS A CL  +   R  ++KN +  S     FE
Sbjct: 536 NNSDSFAVCLACAMIQRSLERKNMSTPSQCSSCFE 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,796
Number of Sequences: 5004
Number of extensions: 36366
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)