BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1010 (474 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 28 0.63 SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 28 0.83 SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 4.5 SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.9 SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 5.9 SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 5.9 >SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual Length = 815 Score = 28.3 bits (60), Expect = 0.63 Identities = 25/90 (27%), Positives = 39/90 (43%) Frame = -1 Query: 300 CFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSVY 121 CF + +SQK+ ++ YC FM + SAL+S +F+F P DL V Sbjct: 152 CFR--IIISQKAALVSIGISTLYYCFVQ--FMEV----KSALISYDRSLFKFYPIDLFVL 203 Query: 120 FLIHNINE*LY*HQYRFVNLSQDNCAFRPK 31 L + + F+N ++ FR K Sbjct: 204 LLSQSFICIIAFGVSDFINFQKEERNFRGK 233 >SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pombe|chr 1|||Manual Length = 561 Score = 27.9 bits (59), Expect = 0.83 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 9 VSNIVVVIWDEKHSCLVKD*QIDIGVNRATR*YYELENKLINLVDQT 149 +SNI+ + KH+C+V + IGV A + Y EN + +L+ T Sbjct: 100 LSNILEPVITAKHTCIVYNSTGAIGVEEALQRQYP-ENPIFSLITHT 145 >SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 2386 Score = 25.4 bits (53), Expect = 4.5 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Frame = -1 Query: 300 CFS---RYVFVSQKSNFFYSNTDSVAYCLTSSS 211 CFS + +F S ++ FYS S+ CLT+ + Sbjct: 1007 CFSLKAKEIFCSLQNEDFYSELQSIIKCLTNEN 1039 >SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 2685 Score = 25.0 bits (52), Expect = 5.9 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = +3 Query: 408 FVNLNHPGGHPNAYKKNHSNR 470 F N N G P+ Y +NH R Sbjct: 2370 FPNRNESDGFPHIYSRNHDKR 2390 >SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 472 Score = 25.0 bits (52), Expect = 5.9 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +2 Query: 308 VPRALDYRLRESLCYVFY 361 +P ALD+ SLCY Y Sbjct: 236 IPNALDFLFMPSLCYQLY 253 >SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||Manual Length = 624 Score = 25.0 bits (52), Expect = 5.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 252 SNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFE 148 +N+DS A CL + R ++KN + S FE Sbjct: 536 NNSDSFAVCLACAMIQRSLERKNMSTPSQCSSCFE 570 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,880,796 Number of Sequences: 5004 Number of extensions: 36366 Number of successful extensions: 90 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 90 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 182448900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -