Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054     28   3.3  
07_01_0757 - 5827536-5827751,5828016-5828159                           28   3.3  

>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
          Length = 995

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 377 GNNLEYRKRNINSPLTDNLEREALFIALVDM 285
           GN  EY + NIN  L D LE +   I L D+
Sbjct: 131 GNKNEYTRENINGRLCDLLEDKNTLIVLDDL 161


>07_01_0757 - 5827536-5827751,5828016-5828159
          Length = 119

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 458 IFFVCVWVAPWMV*IHKSVSVRLFIFPGNNLEYRKR 351
           +FF+ VWV  W+V    + S     F   N EYRKR
Sbjct: 77  LFFLVVWVIQWLVIFVMTYSA----FDDANQEYRKR 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,764,699
Number of Sequences: 37544
Number of extensions: 183193
Number of successful extensions: 327
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)