BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1010 (474 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.49 SB_4151| Best HMM Match : DUF1035 (HMM E-Value=6) 28 4.5 SB_22490| Best HMM Match : Fz (HMM E-Value=8.3e-32) 27 7.9 >SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2077 Score = 31.1 bits (67), Expect = 0.49 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -2 Query: 428 WMV*IHKSVSVRLFIFPGNNLEYRKRN 348 WM+ I +S+S+ ++FP N+L RN Sbjct: 1136 WMLDIEESISIAFYVFPNNSLGNTSRN 1162 >SB_4151| Best HMM Match : DUF1035 (HMM E-Value=6) Length = 254 Score = 27.9 bits (59), Expect = 4.5 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +1 Query: 274 RYKDISTKAIKSASRSRLSVKGEFMLRFLYSKLF 375 R K + +S+SR +LS G F +R+L+ +F Sbjct: 12 RQKKLRKTRARSSSRGKLSGSGRFGIRYLHHHMF 45 >SB_22490| Best HMM Match : Fz (HMM E-Value=8.3e-32) Length = 308 Score = 27.1 bits (57), Expect = 7.9 Identities = 7/24 (29%), Positives = 19/24 (79%) Frame = -1 Query: 255 YSNTDSVAYCLTSSSFMRIWQKKN 184 Y N++ VA+ ++ S++++W+K++ Sbjct: 248 YENSNGVAHYISQRSYVKVWRKES 271 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,095,007 Number of Sequences: 59808 Number of extensions: 229964 Number of successful extensions: 449 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 449 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 994359969 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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