Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.49 
SB_4151| Best HMM Match : DUF1035 (HMM E-Value=6)                      28   4.5  
SB_22490| Best HMM Match : Fz (HMM E-Value=8.3e-32)                    27   7.9  

>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 428  WMV*IHKSVSVRLFIFPGNNLEYRKRN 348
            WM+ I +S+S+  ++FP N+L    RN
Sbjct: 1136 WMLDIEESISIAFYVFPNNSLGNTSRN 1162


>SB_4151| Best HMM Match : DUF1035 (HMM E-Value=6)
          Length = 254

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 274 RYKDISTKAIKSASRSRLSVKGEFMLRFLYSKLF 375
           R K +     +S+SR +LS  G F +R+L+  +F
Sbjct: 12  RQKKLRKTRARSSSRGKLSGSGRFGIRYLHHHMF 45


>SB_22490| Best HMM Match : Fz (HMM E-Value=8.3e-32)
          Length = 308

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = -1

Query: 255 YSNTDSVAYCLTSSSFMRIWQKKN 184
           Y N++ VA+ ++  S++++W+K++
Sbjct: 248 YENSNGVAHYISQRSYVKVWRKES 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,007
Number of Sequences: 59808
Number of extensions: 229964
Number of successful extensions: 449
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)