Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    26   0.77 
AY146721-1|AAO12081.1|  144|Anopheles gambiae odorant-binding pr...    25   1.0  
AF437884-1|AAL84179.1|  144|Anopheles gambiae odorant binding pr...    25   1.0  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    22   9.5  

>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 271 LRYKDISTKAIKSASRSRLSV 333
           L Y D+ T+AI SAS SRL++
Sbjct: 119 LSYADLITQAISSASDSRLTL 139


>AY146721-1|AAO12081.1|  144|Anopheles gambiae odorant-binding
           protein AgamOBP1 protein.
          Length = 144

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 75  DIGVNRATR*YYELENKLINLVDQTQKCLKSN*PKHYF 188
           DI ++   R  Y     L +      KC K + PKHYF
Sbjct: 105 DIAMHMGKRCLYPEGETLCDKAFWLHKCWKQSDPKHYF 142


>AF437884-1|AAL84179.1|  144|Anopheles gambiae odorant binding
           protein protein.
          Length = 144

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 75  DIGVNRATR*YYELENKLINLVDQTQKCLKSN*PKHYF 188
           DI ++   R  Y     L +      KC K + PKHYF
Sbjct: 105 DIAMHMGKRCLYPEGETLCDKAFWLHKCWKQSDPKHYF 142


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 157 HF*VWSTRFISLFSN 113
           HF  WS  ++SL SN
Sbjct: 328 HFAAWSALYVSLASN 342


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,776
Number of Sequences: 2352
Number of extensions: 8365
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41670678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)