Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81583-6|CAB04674.1|  397|Caenorhabditis elegans Hypothetical pr...    31   0.32 
Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical ...    27   6.9  

>Z81583-6|CAB04674.1|  397|Caenorhabditis elegans Hypothetical
           protein T02G6.6 protein.
          Length = 397

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 225 LTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSV 124
           +T++ ++  W K N+  VSC + +FEF  + +SV
Sbjct: 58  ITNAQYLVYWMKINTDTVSCLISVFEFNFKLVSV 91


>Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical
           protein F14F8.6 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 92  SYSLIL*IRK*TDKSCGPNSKMSKKQLTKALFF 190
           +++L+  IRK   K+C P +K  K++ TK + F
Sbjct: 257 TFALVFAIRKHKKKNCTPGNKSDKEKTTKLVSF 289


>AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical
           protein F39G3.6 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 117 ENKLINLVDQTQKCLKSN*PKHYFFFAIFA*NSTKLDNRLQNRY 248
           +N++ NL  +    LK +  K  FF  IF   STK D R +N+Y
Sbjct: 297 DNQINNLHLKVNLFLKKHLEKRVFFL-IFIIFSTKHDTRTKNKY 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,587
Number of Sequences: 27780
Number of extensions: 191320
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)