BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1010 (474 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81583-6|CAB04674.1| 397|Caenorhabditis elegans Hypothetical pr... 31 0.32 Z92782-5|CAB07190.1| 385|Caenorhabditis elegans Hypothetical pr... 29 2.3 AF016424-1|AAB65331.2| 617|Caenorhabditis elegans Hypothetical ... 27 6.9 >Z81583-6|CAB04674.1| 397|Caenorhabditis elegans Hypothetical protein T02G6.6 protein. Length = 397 Score = 31.5 bits (68), Expect = 0.32 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -1 Query: 225 LTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSV 124 +T++ ++ W K N+ VSC + +FEF + +SV Sbjct: 58 ITNAQYLVYWMKINTDTVSCLISVFEFNFKLVSV 91 >Z92782-5|CAB07190.1| 385|Caenorhabditis elegans Hypothetical protein F14F8.6 protein. Length = 385 Score = 28.7 bits (61), Expect = 2.3 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +2 Query: 92 SYSLIL*IRK*TDKSCGPNSKMSKKQLTKALFF 190 +++L+ IRK K+C P +K K++ TK + F Sbjct: 257 TFALVFAIRKHKKKNCTPGNKSDKEKTTKLVSF 289 >AF016424-1|AAB65331.2| 617|Caenorhabditis elegans Hypothetical protein F39G3.6 protein. Length = 617 Score = 27.1 bits (57), Expect = 6.9 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 117 ENKLINLVDQTQKCLKSN*PKHYFFFAIFA*NSTKLDNRLQNRY 248 +N++ NL + LK + K FF IF STK D R +N+Y Sbjct: 297 DNQINNLHLKVNLFLKKHLEKRVFFL-IFIIFSTKHDTRTKNKY 339 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,147,587 Number of Sequences: 27780 Number of extensions: 191320 Number of successful extensions: 371 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 368 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 371 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 860942358 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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