BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1010 (474 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 26 0.24 AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 25 0.31 DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 24 0.72 DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 24 0.72 DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 24 0.72 DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 2.2 AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 21 6.7 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 8.9 AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 21 8.9 >U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin protein. Length = 377 Score = 25.8 bits (54), Expect = 0.24 Identities = 14/62 (22%), Positives = 32/62 (51%) Frame = -1 Query: 288 YVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSVYFLIH 109 Y+F+S KS SN + L S+F+ ++ +++C+ + + GP +Y ++ Sbjct: 75 YIFLSTKSLRTPSNLFVIN--LAISNFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLG 132 Query: 108 NI 103 ++ Sbjct: 133 SL 134 >AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodopsin protein. Length = 152 Score = 25.4 bits (53), Expect = 0.31 Identities = 14/62 (22%), Positives = 31/62 (50%) Frame = -1 Query: 288 YVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSVYFLIH 109 Y+F+S KS SN + L S F+ ++ +++C+ + + GP +Y ++ Sbjct: 41 YIFLSTKSLRTPSNLFVIN--LAISDFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLG 98 Query: 108 NI 103 ++ Sbjct: 99 SL 100 >DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride channel variant 3 protein. Length = 475 Score = 24.2 bits (50), Expect = 0.72 Identities = 10/45 (22%), Positives = 21/45 (46%) Frame = -1 Query: 315 RGTFYCFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNS 181 RG + C + ++ F+++ L +SSF+ W + N+ Sbjct: 253 RGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNA 297 >DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride channel variant 1 protein. Length = 509 Score = 24.2 bits (50), Expect = 0.72 Identities = 10/45 (22%), Positives = 21/45 (46%) Frame = -1 Query: 315 RGTFYCFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNS 181 RG + C + ++ F+++ L +SSF+ W + N+ Sbjct: 304 RGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNA 348 >DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride channel protein. Length = 458 Score = 24.2 bits (50), Expect = 0.72 Identities = 10/45 (22%), Positives = 21/45 (46%) Frame = -1 Query: 315 RGTFYCFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNS 181 RG + C + ++ F+++ L +SSF+ W + N+ Sbjct: 253 RGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNA 297 >DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride channel variant 4 protein. Length = 489 Score = 22.6 bits (46), Expect = 2.2 Identities = 9/45 (20%), Positives = 21/45 (46%) Frame = -1 Query: 315 RGTFYCFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNS 181 +G + C + ++ F+++ L +SSF+ W + N+ Sbjct: 284 QGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNA 328 >AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin releasing hormone-binding protein protein. Length = 332 Score = 21.0 bits (42), Expect = 6.7 Identities = 6/12 (50%), Positives = 9/12 (75%) Frame = -1 Query: 312 GTFYCFSRYVFV 277 G+ YCF+R F+ Sbjct: 5 GSLYCFARLFFI 16 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 20.6 bits (41), Expect = 8.9 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = -1 Query: 282 FVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKK 187 F S+ F N D V SSF+ W KK Sbjct: 370 FRSKPYRFGIQNGDYVVLETEWSSFINPWTKK 401 >AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. Length = 238 Score = 20.6 bits (41), Expect = 8.9 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = -1 Query: 282 FVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKK 187 F S+ F N D V SSF+ W KK Sbjct: 76 FRSKPYRFGIQNGDYVVLETEWSSFINPWTKK 107 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 125,914 Number of Sequences: 438 Number of extensions: 2673 Number of successful extensions: 9 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 53 effective length of database: 123,129 effective search space used: 12805416 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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