Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    26   0.24 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.31 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   0.72 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   0.72 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   0.72 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = -1

Query: 288 YVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSVYFLIH 109
           Y+F+S KS    SN   +   L  S+F+ ++      +++C+ + +  GP    +Y ++ 
Sbjct: 75  YIFLSTKSLRTPSNLFVIN--LAISNFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLG 132

Query: 108 NI 103
           ++
Sbjct: 133 SL 134


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = -1

Query: 288 YVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEFGPQDLSVYFLIH 109
           Y+F+S KS    SN   +   L  S F+ ++      +++C+ + +  GP    +Y ++ 
Sbjct: 41  YIFLSTKSLRTPSNLFVIN--LAISDFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLG 98

Query: 108 NI 103
           ++
Sbjct: 99  SL 100


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 315 RGTFYCFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNS 181
           RG + C    +  ++   F+++        L +SSF+  W + N+
Sbjct: 253 RGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNA 297


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 315 RGTFYCFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNS 181
           RG + C    +  ++   F+++        L +SSF+  W + N+
Sbjct: 304 RGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNA 348


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 315 RGTFYCFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNS 181
           RG + C    +  ++   F+++        L +SSF+  W + N+
Sbjct: 253 RGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNA 297


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = -1

Query: 315 RGTFYCFSRYVFVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKKNS 181
           +G + C    +  ++   F+++        L +SSF+  W + N+
Sbjct: 284 QGNYSCLKVDLIFTRDRAFYFTTVFIPGIILVTSSFITFWLEWNA 328


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 312 GTFYCFSRYVFV 277
           G+ YCF+R  F+
Sbjct: 5   GSLYCFARLFFI 16


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 282 FVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKK 187
           F S+   F   N D V      SSF+  W KK
Sbjct: 370 FRSKPYRFGIQNGDYVVLETEWSSFINPWTKK 401


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 282 FVSQKSNFFYSNTDSVAYCLTSSSFMRIWQKK 187
           F S+   F   N D V      SSF+  W KK
Sbjct: 76  FRSKPYRFGIQNGDYVVLETEWSSFINPWTKK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,914
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)