Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1010
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23320.1 68416.m02941 hypothetical protein                          28   2.8  
At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A...    27   6.5  
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    27   6.5  

>At3g23320.1 68416.m02941 hypothetical protein 
          Length = 191

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 255 YSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEF-GPQDLSVYFLIHN 106
           + N D+V    T SS    WQK  +  V C  D+    G QD  + ++I N
Sbjct: 11  HKNDDNVKGGQTKSSRTDKWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRN 61


>At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 500

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 167 QLTKALFFFCHIRIKLDEVRQ 229
           ++ +ALF  CH R K DE +Q
Sbjct: 440 EMDEALFMSCHARFKEDEAKQ 460


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 153 FEFGPQDLSVYFLIHNINE*LY*HQYRFVNLSQ 55
           FE   +D S++FL HN +E ++ H ++ +N  +
Sbjct: 65  FEEDDKDTSIWFLDHNYHESMF-HMFKRINAKE 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,332,564
Number of Sequences: 28952
Number of extensions: 169097
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)