BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1010 (474 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g23320.1 68416.m02941 hypothetical protein 28 2.8 At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A... 27 6.5 At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 27 6.5 >At3g23320.1 68416.m02941 hypothetical protein Length = 191 Score = 28.3 bits (60), Expect = 2.8 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -1 Query: 255 YSNTDSVAYCLTSSSFMRIWQKKNSALVSCFLDIFEF-GPQDLSVYFLIHN 106 + N D+V T SS WQK + V C D+ G QD + ++I N Sbjct: 11 HKNDDNVKGGQTKSSRTDKWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRN 61 >At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative similar to SWISS-PROT:Q28653 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform (PP2A, B subunit, B' delta isoform, PP2A, B subunit, B56 delta isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta isoform, PP2A, B subunit, B'-gamma) [Oryctolagus cuniculus]; contains Pfam domain, PF01603: Protein phosphatase 2A regulatory B subunit (B56 family) Length = 500 Score = 27.1 bits (57), Expect = 6.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 167 QLTKALFFFCHIRIKLDEVRQ 229 ++ +ALF CH R K DE +Q Sbjct: 440 EMDEALFMSCHARFKEDEAKQ 460 >At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory subunit 7, putative / 26S proteasome regulatory subunit S12, putative / MOV34 protein, putative contains similarity to 26S proteasome regulatory subunit S12 (MOV34) SP:P26516 from [Mus musculus] Length = 310 Score = 27.1 bits (57), Expect = 6.5 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = -1 Query: 153 FEFGPQDLSVYFLIHNINE*LY*HQYRFVNLSQ 55 FE +D S++FL HN +E ++ H ++ +N + Sbjct: 65 FEEDDKDTSIWFLDHNYHESMF-HMFKRINAKE 96 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,332,564 Number of Sequences: 28952 Number of extensions: 169097 Number of successful extensions: 347 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 347 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 811731120 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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