Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1009
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    24   0.66 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.5  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   6.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.1  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 196 RVYVGVFLHNGDKVLCSGGS-ANGVAQS 116
           R  VG     GD + C GGS ANG A S
Sbjct: 181 RAIVGFEGGKGDGIFCPGGSIANGYAIS 208


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 353 DIFLVQETLLKPARRDPKIANYNMXRNDRLS 445
           D FL+ ++L    RRD    NY      +++
Sbjct: 489 DAFLIDQSLALNRRRDENPRNYRSDEGPQIT 519


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 353 DIFLVQETLLKPARRDPKIANYNMXRNDRLS 445
           D FL+ ++L    RRD    NY      +++
Sbjct: 489 DAFLIDQSLALNRRRDENPRNYRSDEGPQIT 519


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 163 DKVLCSGGSANGVAQ 119
           D + CSGG   GV Q
Sbjct: 131 DFLACSGGKGGGVIQ 145


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 270 DRGFILLIYAIDYRR 226
           D+ F LL Y+I+YRR
Sbjct: 107 DKQFGLLGYSINYRR 121


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 204  FNDAYTSAYSCTTAIKCCAV 145
            F+D +T+ Y     + C AV
Sbjct: 1312 FDDTFTTTYKEDVTLPCLAV 1331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,197
Number of Sequences: 336
Number of extensions: 1742
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)