BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1009 (498 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ... 29 0.29 SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 27 2.1 SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 25 4.8 SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 25 4.8 SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 25 4.8 SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 4.8 >SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces pombe|chr 1|||Manual Length = 247 Score = 29.5 bits (63), Expect = 0.29 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +2 Query: 272 VTIGFFNAYGLANQRDQVSDFLRDHQIDIFL 364 V IGF + +GL+ Q + +D L +H++ I+L Sbjct: 43 VLIGFMDVFGLSKQIKEGADQLANHELAIYL 73 >SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharomyces pombe|chr 3|||Manual Length = 249 Score = 26.6 bits (56), Expect = 2.1 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +2 Query: 269 SVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKP 388 SV G YG + +FL+ H ID FLV LKP Sbjct: 199 SVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKP 238 >SPAC21E11.06 |tif224||translation initiation factor eIF2B delta subunit|Schizosaccharomyces pombe|chr 1|||Manual Length = 467 Score = 25.4 bits (53), Expect = 4.8 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = +2 Query: 122 GDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR*SMAYISRIKPLSVTIG 283 G R + F V+Q+Y Y + + L + +AY+ +PLS+++G Sbjct: 159 GSNQRCIDLLKTFKIVIQDYQTPYGTTLSRHLTTHINSQIAYLVSTRPLSISMG 212 >SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 519 Score = 25.4 bits (53), Expect = 4.8 Identities = 9/30 (30%), Positives = 20/30 (66%) Frame = +2 Query: 335 LRDHQIDIFLVQETLLKPARRDPKIANYNM 424 L+ H + +FL+ TL++ +++ + NYN+ Sbjct: 240 LKPHDM-VFLISNTLVEANKQETALTNYNL 268 >SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces pombe|chr 2|||Manual Length = 249 Score = 25.4 bits (53), Expect = 4.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 Query: 272 VTIGFFNAYGLANQRDQVSDFLRDHQIDIFL 364 V IGF + +GL++Q + +D L D ++L Sbjct: 44 VLIGFMDIFGLSDQIKEGADKLADDGFTVYL 74 >SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 25.4 bits (53), Expect = 4.8 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +3 Query: 123 ATPFALPPLHNTLSPLCKNTPTYTRH*IR 209 ATP P L SPL K PT ++ +R Sbjct: 54 ATPLPQPSLKTPESPLSKRNPTIKQNRVR 82 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,620,192 Number of Sequences: 5004 Number of extensions: 28875 Number of successful extensions: 73 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 73 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 196153982 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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