Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1009
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    29   0.29 
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    27   2.1  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   4.8  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   4.8  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    25   4.8  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   4.8  

>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 272 VTIGFFNAYGLANQRDQVSDFLRDHQIDIFL 364
           V IGF + +GL+ Q  + +D L +H++ I+L
Sbjct: 43  VLIGFMDVFGLSKQIKEGADQLANHELAIYL 73


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 269 SVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKP 388
           SV  G    YG +       +FL+ H ID FLV    LKP
Sbjct: 199 SVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKP 238


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 122 GDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR*SMAYISRIKPLSVTIG 283
           G   R     + F  V+Q+Y   Y +  +  L +     +AY+   +PLS+++G
Sbjct: 159 GSNQRCIDLLKTFKIVIQDYQTPYGTTLSRHLTTHINSQIAYLVSTRPLSISMG 212


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 335 LRDHQIDIFLVQETLLKPARRDPKIANYNM 424
           L+ H + +FL+  TL++  +++  + NYN+
Sbjct: 240 LKPHDM-VFLISNTLVEANKQETALTNYNL 268


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 272 VTIGFFNAYGLANQRDQVSDFLRDHQIDIFL 364
           V IGF + +GL++Q  + +D L D    ++L
Sbjct: 44  VLIGFMDIFGLSDQIKEGADKLADDGFTVYL 74


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 123 ATPFALPPLHNTLSPLCKNTPTYTRH*IR 209
           ATP   P L    SPL K  PT  ++ +R
Sbjct: 54  ATPLPQPSLKTPESPLSKRNPTIKQNRVR 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,192
Number of Sequences: 5004
Number of extensions: 28875
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)