Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1009
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0156 + 32035503-32035769,32036436-32036539,32036734-320368...    29   2.7  
05_06_0044 - 25150322-25151260                                         27   8.4  
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281...    27   8.4  
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827...    27   8.4  
01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30...    27   8.4  

>03_06_0156 +
           32035503-32035769,32036436-32036539,32036734-32036844,
           32036923-32037073,32037614-32037888,32037998-32038211
          Length = 373

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 284 FFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMXRN 433
           +F A+ LAN RDQ+   +     D +L   +  K A  +  I NYN  +N
Sbjct: 293 WFRAFSLANPRDQIRLAITLALYDNYLKLPSNWKRADANSDILNYNGPKN 342


>05_06_0044 - 25150322-25151260
          Length = 312

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 299 GLANQRDQVSDFLRDHQIDIFLVQE 373
           G A   DQ+ DF+ DH    F+V+E
Sbjct: 271 GFAMPDDQIVDFVADHPFLFFIVEE 295


>04_01_0223 +
           2813129-2814014,2815928-2816309,2816358-2816459,
           2816727-2817249
          Length = 630

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = +2

Query: 92  SINFERVNALGDAIRAASTAQHFIAVVQEYADVYASLNTYVLPSLRR*SMAYISRIKPLS 271
           S+NF R  A+  +I   +  +  +A VQ      AS    V  S +   +     + P  
Sbjct: 204 SLNFSRNGAMRASITFDNVTRMLVATVQFTDQTTASRAAPVQVSAK---LGDPRALLPSE 260

Query: 272 VTIGFFNAYGLANQRDQV 325
           V +GF  A G   Q DQ+
Sbjct: 261 VAVGFSTANGATFQLDQI 278


>02_05_0684 -
           30880527-30880753,30881952-30882124,30882687-30882754,
           30882860-30882973,30883281-30883438,30883516-30883654,
           30883851-30883907,30884064-30884140,30884324-30884462,
           30884590-30884668,30885047-30885174,30885269-30885352,
           30886072-30886191,30886274-30886375,30886470-30886617,
           30887404-30887749,30887851-30887968,30888309-30888370,
           30888798-30888947,30889049-30889169,30889269-30889319,
           30889427-30889567
          Length = 933

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 74  AIDFFQSINFERVNALGDAIRAASTAQHFIAVVQ 175
           A+D F+S   + V AL D  RA    QHFI +VQ
Sbjct: 489 ALDVFKSDAKKMVVALVDMERAFVPPQHFIRLVQ 522


>01_01_0039 +
           302332-302471,302981-303509,304345-304389,304572-304718,
           304834-304899,304993-305058,305171-305257
          Length = 359

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 4   SSRPRNSSLSRD-LPSDRVRQSRFSDRLLSVDQL 102
           S +PR  S S   LPS +VR+ +  DR+ ++ QL
Sbjct: 270 SKKPRLESHSSSMLPSFKVRKEKLGDRIAALQQL 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,221
Number of Sequences: 37544
Number of extensions: 196221
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)