Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1009
         (498 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          24   2.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   5.8  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    23   7.6  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   SSRPRNSSLSRDLPSDRVRQSRFSDR 81
           SSR R+ SLSR +   R R SR   R
Sbjct: 416 SSRSRSRSLSRSVSRSRSRGSRSRSR 441


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 47  EGKSRERDEL 18
           EGK+RERDEL
Sbjct: 941 EGKNRERDEL 950


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 239 MAYISRIKPLSVTIGFFNAYGLAN 310
           MA I R+ P+SV  G F   G+A+
Sbjct: 861 MAPILRLIPMSVLFGVFLYLGIAS 884


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,775
Number of Sequences: 2352
Number of extensions: 7353
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)