BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1009 (498 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 46 3e-05 M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 40 0.002 M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 40 0.002 AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 36 0.030 AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 31 0.65 M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 29 3.5 AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 29 3.5 AY071121-1|AAL48743.1| 119|Drosophila melanogaster RE17113p pro... 28 6.1 AE014297-472|AAN13360.2| 1091|Drosophila melanogaster CG15186-PB... 28 6.1 AE014297-470|AAF54118.2| 1072|Drosophila melanogaster CG15186-PA... 28 6.1 AE014296-1399|AAN12016.1| 119|Drosophila melanogaster CG13679-P... 28 6.1 AE014296-1398|AAF50465.1| 145|Drosophila melanogaster CG13679-P... 28 6.1 M81887-1|AAA28844.1| 2248|Drosophila melanogaster rutabaga adeny... 28 8.1 AE014298-2053|AAF48388.1| 2248|Drosophila melanogaster CG9533-PA... 28 8.1 >AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. Length = 884 Score = 46.0 bits (104), Expect = 3e-05 Identities = 26/67 (38%), Positives = 39/67 (58%) Frame = +2 Query: 269 SVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMXRNDRLSA 448 ++ I +NA + N+R ++ FL ++ I I L+ ET L + R I Y + RNDR + Sbjct: 11 NLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRF-NIPEYTIYRNDRKES 69 Query: 449 RGGGTAI 469 RGGG AI Sbjct: 70 RGGGVAI 76 >M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.melanogaster mobileelement jockey gag-specific protein gene, complete cds.). Length = 192 Score = 39.9 bits (89), Expect = 0.002 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +2 Query: 269 SVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMXRNDRLS- 445 ++ IG +NA GL +++ FL DH ID+ L ET ++ +R + Y M S Sbjct: 5 TLKIGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQR-IYLPGYLMYHAHHPSG 63 Query: 446 -ARGGGTAIYYRRALH 490 +RGG I R H Sbjct: 64 NSRGGSAVIIKSRLCH 79 >M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.melanogaster LINEelement J-1, clone J-1. ). Length = 916 Score = 39.9 bits (89), Expect = 0.002 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +2 Query: 269 SVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMXRNDRLS- 445 ++ IG +NA GL +++ FL DH ID+ L ET ++ +R + Y M S Sbjct: 5 TLKIGLWNARGLTRGSEELRIFLSDHDIDVMLTTETHMRVGQR-IYLPGYLMYHAHHPSG 63 Query: 446 -ARGGGTAIYYRRALH 490 +RGG I R H Sbjct: 64 NSRGGSAVIIKSRLCH 79 >AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein. Length = 908 Score = 35.9 bits (79), Expect = 0.030 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +2 Query: 263 PLSVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANY-NMXRNDR 439 PL + + +NA G++ + +V F+R H+ID+ L+ ET K A PK+ + ND Sbjct: 3 PLRILV--WNADGVSTKLPEVECFVRRHEIDVLLLSETHCKGA-ETPKLFGFVAYTANDP 59 Query: 440 LSARG-GGTAIYYRRAL 487 GG AI + +L Sbjct: 60 SGGNAKGGAAILIKNSL 76 >AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. Length = 1227 Score = 31.5 bits (68), Expect = 0.65 Identities = 13/39 (33%), Positives = 26/39 (66%) Frame = +2 Query: 266 LSVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLL 382 +++TI +N +G+ N ++++ ++DH DI +QET L Sbjct: 1 MTITILQWNIHGIFNNYNELTLLIKDHAPDIVFLQETKL 39 >M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 protein. Length = 1219 Score = 29.1 bits (62), Expect = 3.5 Identities = 18/77 (23%), Positives = 33/77 (42%) Frame = +2 Query: 266 LSVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIANYNMXRNDRLS 445 +S+TI +N G N + ++ + I +QET ++ P NY + N + Sbjct: 1 MSLTIIQWNLKGYLNNYSHLLILIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATN 60 Query: 446 ARGGGTAIYYRRALHCV 496 GG + ++ H V Sbjct: 61 RFGGVRLLVHKSIQHTV 77 >AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse transcriptase protein. Length = 832 Score = 29.1 bits (62), Expect = 3.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 407 IANYNMXRNDRLSARGGGTAI 469 I Y + RNDR +RGGG AI Sbjct: 4 IPEYTIYRNDRKESRGGGVAI 24 >AY071121-1|AAL48743.1| 119|Drosophila melanogaster RE17113p protein. Length = 119 Score = 28.3 bits (60), Expect = 6.1 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = -1 Query: 306 ARP*ALKNPIVTDRGFILLIYAIDYR-RSDGRTYVFNDAYTSAYSCTTAIKCCAVEAARM 130 A P A P V + YA Y S + F AYT+AY+ A A AA Sbjct: 27 AAPLAYTAPAVVGSAAYVAPYASSYSAHSVAHSAAFPAAYTAAYTAPVAAAYTAPVAAAY 86 Query: 129 ASPKA 115 A+P A Sbjct: 87 AAPIA 91 >AE014297-472|AAN13360.2| 1091|Drosophila melanogaster CG15186-PB, isoform B protein. Length = 1091 Score = 28.3 bits (60), Expect = 6.1 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -1 Query: 198 DAYTSAYSCTTAIKCCAVEAARMASPKALTRSK 100 D YT+A + A++C + AAR P T K Sbjct: 504 DIYTAALAAAAAVRCSPLPAARSVEPIYATAQK 536 >AE014297-470|AAF54118.2| 1072|Drosophila melanogaster CG15186-PA, isoform A protein. Length = 1072 Score = 28.3 bits (60), Expect = 6.1 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -1 Query: 198 DAYTSAYSCTTAIKCCAVEAARMASPKALTRSK 100 D YT+A + A++C + AAR P T K Sbjct: 485 DIYTAALAAAAAVRCSPLPAARSVEPIYATAQK 517 >AE014296-1399|AAN12016.1| 119|Drosophila melanogaster CG13679-PB, isoform B protein. Length = 119 Score = 28.3 bits (60), Expect = 6.1 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = -1 Query: 306 ARP*ALKNPIVTDRGFILLIYAIDYR-RSDGRTYVFNDAYTSAYSCTTAIKCCAVEAARM 130 A P A P V + YA Y S + F AYT+AY+ A A AA Sbjct: 27 AAPLAYTAPAVVGSAAYVAPYASSYSAHSVAHSAAFPAAYTAAYTAPVAAAYTAPVAAAY 86 Query: 129 ASPKA 115 A+P A Sbjct: 87 AAPIA 91 >AE014296-1398|AAF50465.1| 145|Drosophila melanogaster CG13679-PA, isoform A protein. Length = 145 Score = 28.3 bits (60), Expect = 6.1 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = -1 Query: 306 ARP*ALKNPIVTDRGFILLIYAIDYR-RSDGRTYVFNDAYTSAYSCTTAIKCCAVEAARM 130 A P A P V + YA Y S + F AYT+AY+ A A AA Sbjct: 53 AAPLAYTAPAVVGSAAYVAPYASSYSAHSVAHSAAFPAAYTAAYTAPVAAAYTAPVAAAY 112 Query: 129 ASPKA 115 A+P A Sbjct: 113 AAPIA 117 >M81887-1|AAA28844.1| 2248|Drosophila melanogaster rutabaga adenylyl cyclase protein. Length = 2248 Score = 27.9 bits (59), Expect = 8.1 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +2 Query: 305 ANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIAN 415 A D+ S +LRDH +D F + + P RR P + N Sbjct: 428 AGHGDERSSYLRDHGVDTFFI---VPPPHRRKPLMLN 461 >AE014298-2053|AAF48388.1| 2248|Drosophila melanogaster CG9533-PA protein. Length = 2248 Score = 27.9 bits (59), Expect = 8.1 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +2 Query: 305 ANQRDQVSDFLRDHQIDIFLVQETLLKPARRDPKIAN 415 A D+ S +LRDH +D F + + P RR P + N Sbjct: 428 AGHGDERSSYLRDHGVDTFFI---VPPPHRRKPLMLN 461 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,287,829 Number of Sequences: 53049 Number of extensions: 325495 Number of successful extensions: 1037 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1021 length of database: 24,988,368 effective HSP length: 80 effective length of database: 20,744,448 effective search space used: 1763278080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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