Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1009
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical ...    29   2.5  

>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
          protein F44E2.3 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 95 STERSRSLKRDCRTRSEGKSRERDELRGRD 6
          S  RSRS KRD   R   + R+RD  R RD
Sbjct: 5  SRSRSRSPKRDREERKRREDRDRDRERKRD 34


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 104 ERVNALGDAIRAASTAQHFIAVVQEYADVYAS 199
           E    LG   R       F + V+ YADVYAS
Sbjct: 415 EEYGCLGSLFRTGGRTTFFASQVERYADVYAS 446


>AF099002-2|AAC68740.2|  556|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1a protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 104 ERVNALGDAIRAASTAQHFIAVVQEYADVYAS 199
           E    LG   R       F + V+ YADVYAS
Sbjct: 401 EEYGCLGSLFRTGGRTTFFASQVERYADVYAS 432


>AF099002-1|AAK68587.1|  559|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1b protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 104 ERVNALGDAIRAASTAQHFIAVVQEYADVYAS 199
           E    LG   R       F + V+ YADVYAS
Sbjct: 404 EEYGCLGSLFRTGGRTTFFASQVERYADVYAS 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,077,326
Number of Sequences: 27780
Number of extensions: 158678
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)