Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1009
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   7.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 473  SKWRYHHHEQRAC 435
            S W YHH+  + C
Sbjct: 1675 STWGYHHNVNKHC 1687


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 296 YGLANQRDQVSDFLRDHQIDIFLVQETLLKP 388
           YG +       D  ++  ID FLV    LKP
Sbjct: 207 YGGSVTAGNAKDLAKEKDIDGFLVGGASLKP 237


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 275 LRIGALFYLYTPLITGGVM 219
           L I  +++LY  L++GG++
Sbjct: 121 LLIAYIYHLYMGLLSGGII 139


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 43   PSDRVRQSRFSDRLLS 90
            PSDR R    SDRL S
Sbjct: 1381 PSDRGRNDDGSDRLTS 1396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,637
Number of Sequences: 438
Number of extensions: 1970
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)