Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1009
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59100.1 68418.m07404 subtilase family protein contains simil...    31   0.33 
At5g16920.1 68418.m01983 expressed protein                             28   3.0  
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr...    28   3.0  
At5g19330.2 68418.m02304 armadillo/beta-catenin repeat family pr...    27   5.3  
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr...    27   5.3  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    27   5.3  
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ...    27   7.0  
At3g20550.1 68416.m02601 forkhead-associated domain-containing p...    27   7.0  

>At5g59100.1 68418.m07404 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 741

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -1

Query: 276 VTDRGFILLIYAIDYRRSDGR---TYVFNDA-YTSAYSCTTAIKCCAVEAARMASPKAL 112
           VT+R F+  +   D +   GR   TY  N   Y   Y  + A+  C+V+ AR+  PK L
Sbjct: 329 VTNRAFMAKVVLGDGKILIGRSVNTYDMNGTNYPLVYGKSAALSTCSVDKARLCEPKCL 387


>At5g16920.1 68418.m01983 expressed protein
          Length = 256

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +2

Query: 212 VLPSLRR*SMAYISRIKPLSVTIGFFNAYGLANQRDQVSDFLRDHQIDIFLVQETL 379
           +LPS+    +A ++ + P   T+   N   + NQ+D V++FL  H I   L+ E L
Sbjct: 57  MLPSVNPRFLANVTFLMPKDKTLSTSN---IINQQDSVTEFLLRHSIPSSLLFEHL 109


>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 296

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 10  RPRNSSLSRDLPSDRVRQSRFSDRLLSVDQL 102
           RPR  +LS  LPS +VR+ +  DR+ ++ QL
Sbjct: 158 RPRLETLS-PLPSFKVRKEKLGDRITALQQL 187


>At5g19330.2 68418.m02304 armadillo/beta-catenin repeat family
           protein / BTB/POZ domain-containing protein contains
           armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
           BTB/POZ domain, Pfam:PF00651
          Length = 636

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 287 FNAYGLANQRDQVSDFLR 340
           F  YGLA+  D VSDF+R
Sbjct: 388 FALYGLADNEDNVSDFIR 405


>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
           protein / BTB/POZ domain-containing protein contains
           armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
           BTB/POZ domain, Pfam:PF00651
          Length = 710

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 287 FNAYGLANQRDQVSDFLR 340
           F  YGLA+  D VSDF+R
Sbjct: 387 FALYGLADNEDNVSDFIR 404


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 92  TERSRSLKRDCRTRSEGKSRERDELRGRDE 3
           TER +  + + R R E + RE +E + R+E
Sbjct: 475 TERKKREEEEARKREEERKREEEEAKRREE 504


>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 980

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 362 KRYQFDGHAKSQKPDHVDLRDRK 294
           K+ + DGHA  ++ DHVDL  R+
Sbjct: 841 KKLRGDGHAFIKRQDHVDLAGRQ 863


>At3g20550.1 68416.m02601 forkhead-associated domain-containing
           protein / FHA domain-containing protein weak similarity
           to SP|Q28147 Nuclear inhibitor of protein phosphatase-1
           (NIPP-1) (Protein phosphatase 1, regulatory inhibitor
           subunit 8) {Bos taurus}; contains Pfam profile PF00498:
           FHA domain
          Length = 314

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 86  RSRSLKRDCRTRSEGKSRERDELRGRD 6
           RSR  + D R R +  SRERD   GRD
Sbjct: 26  RSREREDDGREREKRNSRERDRDIGRD 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,585,974
Number of Sequences: 28952
Number of extensions: 150299
Number of successful extensions: 413
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)