Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1008
         (352 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   1.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   3.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   4.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   4.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   4.8  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    20   8.5  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -3

Query: 266 WRGTP--RLKDHRRLGSGPCVEGST 198
           W GT   +  + RR  S PC  G+T
Sbjct: 174 WEGTTLSQSPNRRRASSNPCHNGAT 198


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 255  SPAPSSPTWRTSTLRAAVCTPKT 323
            S   +SP W T+T R    T  T
Sbjct: 1044 SSTTTSPWWTTTTTRRTTTTRPT 1066



 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 106  CTADSEGAQLKPEPQTGRPT 165
            C    +  + KP+P T +PT
Sbjct: 2199 CILGRDNDKTKPKPTTMKPT 2218


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 63  PSTCTTFPALRPAGLYC 113
           PS     PAL PAG  C
Sbjct: 155 PSIIDPGPALPPAGFLC 171


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 314 GTHCCP*RTCSPSR 273
           G  CC  RTCS ++
Sbjct: 187 GNKCCCLRTCSSAK 200


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 258 PAPSSPTWRTSTLRAAVCTPKTPKL 332
           P P  PT++   ++  V  P  PK+
Sbjct: 190 PQPVLPTYKWMQVKRNVPKPTVPKI 214


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 258 PAPSSPTWRTSTLRAAVCTPKTPKL 332
           P P  PT++   ++  V  P  PK+
Sbjct: 190 PQPVLPTYKWMQVKRNVPKPTVPKI 214


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 28  VLKVTLQIS*DDHRPVLRSRLCALQGCTADSEGAQLK 138
           V +V  Q+    +  + +  LCAL     D+ G Q+K
Sbjct: 17  VYQVQGQLGLAGNNYIEKQLLCALDKAPCDALGNQIK 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,298
Number of Sequences: 336
Number of extensions: 1420
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)