BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1008 (352 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 49 2e-07 SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 48 6e-07 SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 39 2e-04 SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 2.0 SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 2.6 SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 3.4 SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 24 6.0 SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 24 7.9 SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 24 7.9 SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 24 7.9 SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 24 7.9 >SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharomyces pombe|chr 3|||Manual Length = 229 Score = 49.2 bits (112), Expect = 2e-07 Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 3/43 (6%) Frame = +2 Query: 173 EQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLANKY 292 EQ PE+L LNP VPTL+D + +IWES AI+ YLA+KY Sbjct: 40 EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKY 82 >SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharomyces pombe|chr 3|||Manual Length = 230 Score = 47.6 bits (108), Expect = 6e-07 Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 3/44 (6%) Frame = +2 Query: 170 GEQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLANKY 292 GEQ E+L LNP VPTLVD + +IWES AI+ YLA+KY Sbjct: 39 GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKY 82 >SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 242 Score = 39.1 bits (87), Expect = 2e-04 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPED 322 P Y KL+P P +VDDG++ ES AI+ +L KY ED Sbjct: 40 PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEED 85 >SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual Length = 228 Score = 25.8 bits (54), Expect = 2.0 Identities = 11/32 (34%), Positives = 14/32 (43%) Frame = +1 Query: 199 VEPSTHGPDPSRRWSFNLGVPRHHHLLGEQVR 294 + H P PS R+ F L + HH E R Sbjct: 85 ISDGLHVPHPSNRFDFALSIAVIHHFSNENRR 116 >SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 836 Score = 25.4 bits (53), Expect = 2.6 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +2 Query: 179 LKPEYLKLN-PQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSV 310 LKPE L L+ P L+D G S + + + TYL +++ + + Sbjct: 645 LKPENLLLSHPLKARIKLIDFGSSCFYNEKVYTYLQSRFYRAPEI 689 >SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces pombe|chr 2|||Manual Length = 522 Score = 25.0 bits (52), Expect = 3.4 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 136 KPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPRHHHL 276 +P+P TG P PR T+ E E D + + NL P + +L Sbjct: 380 QPQPNTGSPFPRFTSTNTEDEQESDIPQSDANDS-TVNLNQPNYANL 425 >SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1680 Score = 24.2 bits (50), Expect = 6.0 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%) Frame = +1 Query: 115 DSEGAQLKPE----PQTG-RPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGV 258 D+E L+ + P TG P G A + P+++GP P + N+G+ Sbjct: 72 DAENTNLRKQQDTLPTTGFNNLPEGKAGMQTLPGRPASNGPTPPNPGNGNVGL 124 >SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces pombe|chr 2|||Manual Length = 1309 Score = 23.8 bits (49), Expect = 7.9 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -1 Query: 208 RVQLQIFWFELFP 170 RVQ+Q F FELFP Sbjct: 1270 RVQIQQFVFELFP 1282 >SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 648 Score = 23.8 bits (49), Expect = 7.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 182 KPEYLKLNPQHTVPTLVDDGL 244 KP++L NPQ V + V +GL Sbjct: 349 KPKFLDANPQSAVASRVLEGL 369 >SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1428 Score = 23.8 bits (49), Expect = 7.9 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Frame = +1 Query: 73 VLRSRLCALQGCTADSEGAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGP-DPSRRWSFN 249 V S+L + G T + Q+ P T G A +I+ EP + R S Sbjct: 644 VNNSQLLIISGDTGCGKSTQI-PAFLLENSTKNGKA-VKIYVTEPRRISAISLANRVSQE 701 Query: 250 LG----VPRHHHLLGEQVR*GQQCVPRRP 324 LG R H L+G VR +C P P Sbjct: 702 LGGNPPSARSHELVGYSVRLDSKCTPLTP 730 >SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 934 Score = 23.8 bits (49), Expect = 7.9 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = +2 Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGL 244 GE P ++ QH +P + +DGL Sbjct: 285 GENAGPRKVETIKQHKIPAINEDGL 309 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,316,783 Number of Sequences: 5004 Number of extensions: 22847 Number of successful extensions: 103 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 101 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 106195544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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