Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1008
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    49   2e-07
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    48   6e-07
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    39   2e-04
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   2.0  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   2.6  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   3.4  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   6.0  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    24   7.9  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    24   7.9  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    24   7.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    24   7.9  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
 Frame = +2

Query: 173 EQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLANKY 292
           EQ  PE+L LNP   VPTL+D   +  +IWES AI+ YLA+KY
Sbjct: 40  EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKY 82


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 47.6 bits (108), Expect = 6e-07
 Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = +2

Query: 170 GEQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLANKY 292
           GEQ   E+L LNP   VPTLVD   +  +IWES AI+ YLA+KY
Sbjct: 39  GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKY 82


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 39.1 bits (87), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPED 322
           P Y KL+P    P +VDDG++  ES AI+ +L  KY        ED
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEED 85


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 199 VEPSTHGPDPSRRWSFNLGVPRHHHLLGEQVR 294
           +    H P PS R+ F L +   HH   E  R
Sbjct: 85  ISDGLHVPHPSNRFDFALSIAVIHHFSNENRR 116


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 179 LKPEYLKLN-PQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSV 310
           LKPE L L+ P      L+D G S + +  + TYL +++ +   +
Sbjct: 645 LKPENLLLSHPLKARIKLIDFGSSCFYNEKVYTYLQSRFYRAPEI 689


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 136 KPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPRHHHL 276
           +P+P TG P PR T+     E E      D +   + NL  P + +L
Sbjct: 380 QPQPNTGSPFPRFTSTNTEDEQESDIPQSDANDS-TVNLNQPNYANL 425


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 115 DSEGAQLKPE----PQTG-RPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGV 258
           D+E   L+ +    P TG    P G A  +     P+++GP P    + N+G+
Sbjct: 72  DAENTNLRKQQDTLPTTGFNNLPEGKAGMQTLPGRPASNGPTPPNPGNGNVGL 124


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 208  RVQLQIFWFELFP 170
            RVQ+Q F FELFP
Sbjct: 1270 RVQIQQFVFELFP 1282


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 182 KPEYLKLNPQHTVPTLVDDGL 244
           KP++L  NPQ  V + V +GL
Sbjct: 349 KPKFLDANPQSAVASRVLEGL 369


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
 Frame = +1

Query: 73  VLRSRLCALQGCTADSEGAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGP-DPSRRWSFN 249
           V  S+L  + G T   +  Q+ P       T  G A  +I+  EP        + R S  
Sbjct: 644 VNNSQLLIISGDTGCGKSTQI-PAFLLENSTKNGKA-VKIYVTEPRRISAISLANRVSQE 701

Query: 250 LG----VPRHHHLLGEQVR*GQQCVPRRP 324
           LG      R H L+G  VR   +C P  P
Sbjct: 702 LGGNPPSARSHELVGYSVRLDSKCTPLTP 730


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGL 244
           GE   P  ++   QH +P + +DGL
Sbjct: 285 GENAGPRKVETIKQHKIPAINEDGL 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,316,783
Number of Sequences: 5004
Number of extensions: 22847
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)