Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1008
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 48 2e-06
11_02_0046 + 7711536-7711568,7711685-7711850,7712251-7712339,771... 47 5e-06
12_01_0674 + 5755523-5755613,5756325-5756366,5756830-5756915,575... 45 1e-05
03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049 45 1e-05
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 45 1e-05
12_01_0675 + 5759641-5759722,5760247-5760291,5760690-5760775,576... 44 4e-05
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 44 4e-05
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 41 2e-04
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 41 3e-04
03_01_0249 - 1935355-1935827,1936129-1936330 40 4e-04
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 38 0.002
10_08_0807 - 20712066-20712290,20712750-20713339,20713415-207134... 38 0.002
08_02_1570 + 27931057-27931367,27931486-27931550,27931763-279318... 38 0.002
05_04_0304 - 20048518-20049003,20049074-20049412 37 0.004
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 37 0.004
07_01_0489 + 3694562-3695269 34 0.036
01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911 34 0.036
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 33 0.083
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 32 0.11
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 31 0.19
11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436 31 0.34
10_07_0097 - 12837998-12838336,12839201-12839317,12839737-128398... 30 0.59
10_06_0046 - 10051197-10051610 29 0.78
10_06_0045 - 10048056-10048469 29 1.4
11_05_0087 + 18970741-18972702 27 5.5
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128... 27 5.5
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 27 5.5
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 26 7.2
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 26 9.6
02_05_0898 - 32610635-32610975,32611139-32611208 26 9.6
01_01_0379 - 2956396-2957409 26 9.6
01_01_0370 + 2895685-2895717,2895892-2896944 26 9.6
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 48.0 bits (109), Expect = 2e-06
Identities = 25/57 (43%), Positives = 34/57 (59%)
Frame = +2
Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARAL 340
GE PE++K+NP VP LVD I +S AI YL +KY + + P+D K +AL
Sbjct: 49 GEHSDPEFMKVNPMKFVPALVDGDAVIGDSYAIALYLEDKYPE-HPLLPQDLKMKAL 104
>11_02_0046 +
7711536-7711568,7711685-7711850,7712251-7712339,
7712443-7712514,7712807-7712860,7713000-7713075,
7713238-7713299,7713445-7713504,7713663-7713773
Length = 240
Score = 46.8 bits (106), Expect = 5e-06
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 173 EQLKPEYLKLNPQHTVPTLVD-DGLSIWESRAIITYLANKYAKGSSVYPEDPKARAL 340
EQ PE+ KLNP VP LVD D + +S AI+ YL + Y + + P+DPK +AL
Sbjct: 62 EQSHPEFEKLNPMKYVPALVDGDDTVVVDSFAILLYLEDTYPQ-HPLLPQDPKMKAL 117
>12_01_0674 +
5755523-5755613,5756325-5756366,5756830-5756915,
5757008-5757079,5757450-5757525,5757765-5757826,
5758119-5758178,5758293-5758394
Length = 196
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +2
Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARAL 340
P+Y K+NP VP LVD +I +S AII YL +KY + + P+D K +AL
Sbjct: 44 PDYGKINPIKYVPALVDGDFTISDSLAIILYLEDKYPQ-HPLLPQDLKKKAL 94
>03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049
Length = 319
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +2
Query: 164 HHGEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAK 298
+ G Q P+YLKL P T DD L++ ESR I+ ++A+KYA+
Sbjct: 39 YRGTQRMPQYLKLQPLGEALTFEDDNLTLSESRGILRHIAHKYAR 83
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 45.2 bits (102), Expect = 1e-05
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKY--AKGSSVYPEDPKARALV 343
GEQ PE+++ NP +P L D L ++ESRAI Y+ KY +K + D + ALV
Sbjct: 39 GEQNSPEHVERNPFGKIPALQDGDLVLFESRAIAKYILRKYKSSKVDLLRESDIREAALV 98
Query: 344 D 346
D
Sbjct: 99 D 99
>12_01_0675 +
5759641-5759722,5760247-5760291,5760690-5760775,
5760888-5760959,5761210-5761263,5761385-5761460,
5761778-5761839,5762174-5762233,5762331-5762432
Length = 212
Score = 43.6 bits (98), Expect = 4e-05
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARAL 340
P+Y K+NP +P LVD L + +S AI YL +KY + ++ P+D K +AL
Sbjct: 42 PDYEKINPIKYIPALVDGDLVVSDSLAIALYLEDKYPQ-HALLPKDLKKKAL 92
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = +2
Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARALVD 346
GE P++L NP VP L D L +WESRAI Y+ K K + D K A+VD
Sbjct: 39 GEHKAPDHLARNPFGQVPALQDGDLFLWESRAICKYVCRK-NKPELLKDGDLKESAMVD 96
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 182 KPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKY-AKGSSVYPED 322
+P +L LNP +P L D ++ESRAI Y+A KY A+G+ + P +
Sbjct: 47 QPHFLALNPFGQIPVLQDGDEVLYESRAINRYIATKYKAEGADLLPAE 94
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 40.7 bits (91), Expect = 3e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKY 292
G+ +PE+L NP +P L D L++++SRAI Y+ KY
Sbjct: 39 GDHRRPEHLARNPFGEIPVLEDGDLTLYQSRAIARYIFRKY 79
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 40.3 bits (90), Expect = 4e-04
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYA 295
GE P +LKL P VP D +++ESRAI Y+ ++YA
Sbjct: 40 GEHKSPSFLKLQPFGQVPAFKDSLTTVFESRAICRYICDQYA 81
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2
Query: 173 EQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKY 292
E PE+LK NP +P D L ++ESRAI Y+ KY
Sbjct: 40 EHKSPEHLKRNPFGQIPAFQDGDLYLFESRAIGKYILRKY 79
>10_08_0807 -
20712066-20712290,20712750-20713339,20713415-20713463,
20713669-20713821
Length = 338
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKY 292
G + P+YLKL P T D +++ ESR II ++A+KY
Sbjct: 40 GSKRMPQYLKLQPHGEALTFEDGNVTLVESRKIIRHIADKY 80
>08_02_1570 +
27931057-27931367,27931486-27931550,27931763-27931841,
27931992-27932010,27932091-27932210,27932557-27932626,
27932709-27932752,27932918-27932959,27933033-27933092,
27933413-27933470,27934718-27935376
Length = 508
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +2
Query: 167 HGEQLKPEYLKLNPQHTVPTLVDD--GLSIWESRAIITYLANKYAKGS 304
+G +P+ L++ + P +VD G++++ES AII YLA+KY G+
Sbjct: 178 NGPTFRPKVLEMGGKQQFPYMVDPNTGVAMYESDAIIKYLADKYGDGT 225
>05_04_0304 - 20048518-20049003,20049074-20049412
Length = 274
Score = 37.1 bits (82), Expect = 0.004
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 194 LKLNPQHT-VPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARAL 340
L+LNP H VP LV G + ES I+ YL + + + + P DP RAL
Sbjct: 53 LRLNPVHKKVPVLVHRGRPLAESVIILQYLDDAWPESRPLLPSDPFDRAL 102
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 173 EQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKY 292
E PE+LK NP +P D L ++ESRA+ Y+ KY
Sbjct: 40 EHKSPEHLKRNPFGQMPAFQDGDLLLFESRAVGRYILRKY 79
>07_01_0489 + 3694562-3695269
Length = 235
Score = 33.9 bits (74), Expect = 0.036
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +2
Query: 194 LKLNPQHT-VPTLVDDGLSIWESRAIITYLANKY---AKGSSVYPEDPKARAL 340
L NP H VP L+ I ES+ I+ YL + + A G + P DP ARA+
Sbjct: 54 LASNPVHKKVPVLLHRSNPICESQVIVQYLDDAFPGGAAGGDLLPSDPHARAV 106
>01_04_0045 + 15392817-15392963,15393108-15393156,15393463-15393911
Length = 214
Score = 33.9 bits (74), Expect = 0.036
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 173 EQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANK 289
E PE+ NP VP L D L ++ESRAI Y+ K
Sbjct: 39 EHKSPEHTSRNPFGQVPALQDGDLILFESRAISKYVLRK 77
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 32.7 bits (71), Expect = 0.083
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARA 337
PEYLK+NP VP L ++ES AI +Y SS +PE ++++
Sbjct: 604 PEYLKMNPIGKVPILETPDGPVFESNAIA-----RYVLSSSHFPEVTRSKS 649
Score = 29.9 bits (64), Expect = 0.59
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYL 280
PE+LK+NP +P L ++ES AI Y+
Sbjct: 43 PEFLKMNPIGKIPVLETPDGPVFESNAIARYV 74
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLA 283
PE+LK+NP +P L +++ES AI Y+A
Sbjct: 67 PEFLKMNPLGKIPVLETPEGAVFESNAIARYVA 99
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 31.5 bits (68), Expect = 0.19
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 170 GEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARALVD 346
GE +L +P +P D ++++ESRAI Y+ Y K + + + A+VD
Sbjct: 38 GENRSRHHLARSPFGKIPAFEDGEVTLFESRAIQRYVLRNYNKPDLLREGNLEESAMVD 96
>11_06_0225 + 21451966-21452036,21452127-21452200,21452342-21452436
Length = 79
Score = 30.7 bits (66), Expect = 0.34
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 173 EQLKPEYLKLNPQHTVPTLVDDGLSIWE 256
E L PE+ K+NP VP +VD ++E
Sbjct: 41 EHLSPEFKKINPMGQVPAIVDGRFRLFE 68
>10_07_0097 -
12837998-12838336,12839201-12839317,12839737-12839868,
12840656-12840907
Length = 279
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 221 PTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARALVD 346
PT+++D L ++ + L+N ++ VYP DPKA+ VD
Sbjct: 160 PTVMED-LQALKAAGEVWLLSNMDSQEDIVYPNDPKAKIKVD 200
>10_06_0046 - 10051197-10051610
Length = 137
Score = 29.5 bits (63), Expect = 0.78
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 97 LQGCTADSEGAQLKPEPQTGRPTP 168
++GCT + G Q+ P P T PTP
Sbjct: 21 VRGCTPNCSGEQVVPTPPTAVPTP 44
>10_06_0045 - 10048056-10048469
Length = 137
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 97 LQGCTADSEGAQLKPEPQTGRPTP 168
+QGCT + G Q+ P P PTP
Sbjct: 21 VQGCTPNCSGEQVVPTPPIAVPTP 44
>11_05_0087 + 18970741-18972702
Length = 653
Score = 26.6 bits (56), Expect = 5.5
Identities = 24/80 (30%), Positives = 30/80 (37%)
Frame = +1
Query: 85 RLCALQGCTADSEGAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPR 264
RLC + C A +G Q +P+ R PR R G D G PR
Sbjct: 33 RLCRQRPCRAVPDGGQEEPQLHVVR-APRRPLHGRHGHHREHRRGADELE----PAGSPR 87
Query: 265 HHHLLGEQVR*GQQCVPRRP 324
HH G+ VR G + P
Sbjct: 88 HHR--GQSVRAGANRISDLP 105
>04_01_0123 -
1283197-1283292,1283330-1284439,1284790-1285177,
1285523-1287609
Length = 1226
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 112 ADSEGAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPRHH 270
A+ E + + PQ P PRGT R +G +RR N+ R H
Sbjct: 266 ANGEDPERRESPQRATPPPRGTGDLR-----DQINGRQEARRTRDNVNRSRRH 313
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 254 PRLKDHRRLGSGPCV 210
PRL HRR GSGP +
Sbjct: 92 PRLPGHRRCGSGPLI 106
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 94 ALQGCTADSEGAQLKPEPQTG----RPTPRGTAQTRIFEV-EPSTHGPDPSRRWSFNLGV 258
+++G D +G ++ Q PRG +F+V +PS+ G PSR SF+L +
Sbjct: 508 SIEGTVIDRDGDEVDDGAQDSDIRSNKRPRGF---NLFDVNQPSSSGAGPSRNLSFDLDI 564
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 139 PEPQTGR-PTP-RGTAQTRIFEVEPSTHGPDPSRRWSF 246
P PQT + PT + Q +++ PS HG P W +
Sbjct: 378 PFPQTSQSPTAFQQPGQQQLYPSYPSAHGVQPQPLWGY 415
>02_05_0898 - 32610635-32610975,32611139-32611208
Length = 136
Score = 25.8 bits (54), Expect = 9.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 100 QGCTADSEGAQLKPE 144
+GC AD+EG +++PE
Sbjct: 45 EGCGADAEGGEVRPE 59
>01_01_0379 - 2956396-2957409
Length = 337
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 179 LKPEYLKLNPQHTVPTLVDDGLSI 250
L +Y +L P+H +P +DDG ++
Sbjct: 117 LSADY-RLGPEHRLPAAIDDGAAV 139
>01_01_0370 + 2895685-2895717,2895892-2896944
Length = 361
Score = 25.8 bits (54), Expect = 9.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 197 KLNPQHTVPTLVDDGLSIW 253
+L P+H +PT +DDG + +
Sbjct: 144 RLAPEHRLPTAIDDGAAFF 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,852
Number of Sequences: 37544
Number of extensions: 187573
Number of successful extensions: 643
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -