Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1008
(352 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 42 1e-04
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12) 33 0.086
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013) 29 1.1
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 28 1.9
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 27 3.2
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 27 5.7
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0) 27 5.7
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16) 26 7.5
SB_29436| Best HMM Match : PAN (HMM E-Value=0.021) 26 7.5
SB_1555| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_56229| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 26 9.9
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +2
Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARA 337
PE+L +NP VP +V +G +++ES I ++ ++ ++ P+DP RA
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349
>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
Length = 521
Score = 32.7 bits (71), Expect = 0.086
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 136 KPEPQTGRPTPRG-TAQTRIFEVEPSTHGPDP 228
+PEP+T P PR +TR + +P T+ PDP
Sbjct: 289 RPEPRTELPQPRTYRPETRTYRPDPRTYRPDP 320
Score = 30.3 bits (65), Expect = 0.46
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 136 KPEPQTGRPTPR-GTAQTRIFEVEPSTHGPDP 228
+P P+T RP PR Q R + E T+ PDP
Sbjct: 282 RPRPKTRRPEPRTELPQPRTYRPETRTYRPDP 313
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 136 KPEPQTGRPTPRGTAQTRIFEVEPSTH--GPDPSRRWSFN 249
+P+P+T +P P+ T ++ S+H G PS SFN
Sbjct: 317 RPDPKTYQPWPQRTESPEDKYLKTSSHGGGDSPSTFESFN 356
>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
Length = 1105
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 185 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARALVD 346
P Y+ HTV T + S+ E TY YA G +V PE+ ++D
Sbjct: 1052 PRYVSTWNPHTVLTYLKSLPSLREKLTKATYSEAGYAYGPAVSPENSNTTDIID 1105
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 142 EPQTGRPTPRGTAQTRIFEVEPSTHGP 222
EP+T R + R T Q I E EP GP
Sbjct: 208 EPKTRRTSRRRTKQEEIVEEEPKQEGP 234
>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
Length = 1259
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 255 SQIERPSSTRVGTVC*GFNFKYSGLSCSPWCRST 154
S I+RP TR + F GL C PW + T
Sbjct: 989 SVIDRPLHTRPRSALRRQRFALPGLGCYPWSKQT 1022
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 118 SEGAQLKPEPQTGRPT---PRGTAQTRIFEVEPSTHGPDPS 231
+E A P+ Q G PT P+ +A T + +PS GP S
Sbjct: 382 TENAATNPKTQPGGPTVTTPKSSALTGVTARKPSMPGPTSS 422
>SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 133 LKPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRR 237
++P+ T P G+A+ E + H P+P RR
Sbjct: 218 VEPQGSTSAQRPYGSAEPDKQAAEQAAHEPEPGRR 252
>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
Length = 260
Score = 26.6 bits (56), Expect = 5.7
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 200 LNPQHTVPTLVDDGLSIWESRAIITYLANKYAKGSSVYPEDPKARALVDQ 349
L+P +T+P L + + S II YLA A +Y D R VDQ
Sbjct: 43 LSPFNTLPLLETKEGTFFSSNTIIRYLA---ASSDKLYGSDLFQRGQVDQ 89
>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2204
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 287 CSPSR**WRGTPRLKDHRRLGSGPCVEGST 198
C P + W G L+D R PC+ G T
Sbjct: 1968 CKPCQYPWTGDNCLQDWRNCEPNPCLHGGT 1997
>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
Length = 1003
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 118 SEGAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPRHHHLLGE 285
S A+ + E + P+ R Q+R E P P+PSRR R H + E
Sbjct: 831 SRAAESRAEQPSLEPSSR--VQSRAAESRPEQPSPEPSRRVQSGAVESRGWHSISE 884
>SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)
Length = 419
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 115 DSEGAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRR 237
+++ PE Q+ TP + T I E + +T P PS++
Sbjct: 236 ETQSTTTTPETQSTTTTPETQSTTEIPETQSTTTTPRPSQQ 276
>SB_1555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 163 TPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPR 264
TP T Q E++ S H DP +W F+L + R
Sbjct: 265 TPNVTVQNISSEIQISGHTSDP--KWKFSLALDR 296
>SB_56229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 25.8 bits (54), Expect = 9.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 64 HRPVLRSRLCALQGCTADSEGAQLKPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWS 243
H V +S + L + +E +P+P+ +PTP I E+ T PDP ++
Sbjct: 113 HSAVKQSHIATLSTPVSCAETQTQQPKPEKSKPTPH-----NIREI-LKTPSPDPPKQ-L 165
Query: 244 FNL 252
FNL
Sbjct: 166 FNL 168
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 255 SQIERPSSTRVGTVC*GFNFKYSGLSCSPWCRST 154
S I+RP TR + F GL C PW + T
Sbjct: 1602 SVIDRPLHTRPRSELRRQRFALPGLGCYPWRKQT 1635
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,865
Number of Sequences: 59808
Number of extensions: 201995
Number of successful extensions: 662
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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