Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1008
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 234 TMVFQSGSPAPSSPTW 281
           TM + +G P P  P W
Sbjct: 298 TMTYSNGLPFPQRPIW 313


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 234 TMVFQSGSPAPSSPTW 281
           TM + +G P P  P W
Sbjct: 298 TMTYSNGLPFPQRPIW 313


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 260 RAIITYLANKYAKGSSVYP 316
           +A+  Y AN Y K    YP
Sbjct: 712 QAVRNYYANLYTKYHGQYP 730


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 249 SGSPAPSSPT 278
           S SP+PSSP+
Sbjct: 88  SSSPSPSSPS 97


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -3

Query: 308  HCCP*RTCSP 279
            HC P R C P
Sbjct: 1694 HCAPNRRCPP 1703


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,594
Number of Sequences: 438
Number of extensions: 1566
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)