Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1007
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.3  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   2.3  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   3.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   3.0  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 6   VKGVRKVNNGFYKYYIN 56
           +K V K+NNG YK +++
Sbjct: 202 IKQVCKLNNGHYKNFLS 218


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory
          receptor candidate 25 protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 6  VKGVRKVNNGFYKYYIN 56
          +K V K+NNG YK +++
Sbjct: 27 IKQVCKLNNGHYKNFLS 43


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 44  ILYQLIVVSLHCCSYCWCQLKRRRSPRWCLR 136
           ++Y L+ VSL   +   C +  +++  WC +
Sbjct: 284 VIYTLVSVSLVMVTCDACTIASKQTISWCYK 314


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 44  ILYQLIVVSLHCCSYCWCQLKRRRSPRWCLR 136
           ++Y L+ VSL   +   C +  +++  WC +
Sbjct: 284 VIYTLVSVSLVMVTCDACTIASKQTISWCYK 314


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,568
Number of Sequences: 336
Number of extensions: 2828
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)