BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1007 (547 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.45 SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.0 SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 1.8 SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8 SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 3.2 SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.2 SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 4.2 SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 5.5 SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 25 7.3 SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.6 SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 25 9.6 >SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 983 Score = 29.1 bits (62), Expect = 0.45 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -2 Query: 360 RQEVDEESRRPGSVV*IGRGLCPAVDGCGLKR-LRIVVQMYVQPQRV 223 R V ++ RPGS + + R L P +D CG + LR+ Q Q V Sbjct: 867 RGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMV 913 >SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 231 Score = 27.9 bits (59), Expect = 1.0 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 193 VIKLSSDYTIHSLWLNIHLDNY-SEALKPTAVHC 291 V L S +++H+L N+ LDN SE+ K +AV C Sbjct: 67 VFNLYSRFSVHTLSHNLVLDNVSSESNKTSAVFC 100 >SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Schizosaccharomyces pombe|chr 1|||Manual Length = 880 Score = 27.1 bits (57), Expect = 1.8 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +2 Query: 239 TYIWTTILRRLSPQPSTAGHRPLPI 313 TY + T+ RR +P+PS G+R + + Sbjct: 125 TYTYHTVRRRDTPEPSKVGNRKIRV 149 >SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 319 Score = 27.1 bits (57), Expect = 1.8 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 143 VSSNTTQAYSIRVDGTALSSYQATTLS 223 V+ N Q+YS +DGTAL S A ++ Sbjct: 156 VNGNVNQSYSKGIDGTALPSTHANPVA 182 >SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccharomyces pombe|chr 1|||Manual Length = 569 Score = 26.2 bits (55), Expect = 3.2 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +2 Query: 269 LSPQPSTAGHRPLPIYTTEPGLRLSSSTSCRP 364 +SP PS AG++P P+ + +S ST C P Sbjct: 383 VSP-PSLAGNQPSPLSSPLTNSNVSPSTICSP 413 >SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 25.8 bits (54), Expect = 4.2 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +2 Query: 278 QPSTAGHRPLPIYTTEPGLRLSSSTSCRPP 367 QP+ G PLP T+ LRL S R P Sbjct: 321 QPAGVGSVPLPAPTSSQSLRLGSLHRSRSP 350 >SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr 1|||Manual Length = 570 Score = 25.8 bits (54), Expect = 4.2 Identities = 11/39 (28%), Positives = 20/39 (51%) Frame = +3 Query: 357 AGHRVEVIAPSSQGATHVTYSAATIAVDNGIRPVLLKIN 473 A HR ++ G+ H+T + + NG+ P++ IN Sbjct: 440 APHRRSILIVGD-GSLHLTVQEISATIRNGLTPIIFVIN 477 >SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 25.4 bits (53), Expect = 5.5 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 225 LVVVEHTSGQLF*GA*AHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRVEV 377 LV V + + A A+S L ++++ PL+P S HP L+ V V Sbjct: 228 LVYVSSDNPPVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQPVSV 278 >SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 25.0 bits (52), Expect = 7.3 Identities = 14/60 (23%), Positives = 29/60 (48%) Frame = +1 Query: 97 SAQTKTQPALVSPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKP 276 +A+T+ Q + P P + ++Q+ V+ SDY + HL++ S++ +P Sbjct: 311 NAETENQRSSKPPAPKLESKSPALQNHASTQNVVSKRSDY--EKPFAEPHLNSASDSAEP 368 >SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|Schizosaccharomyces pombe|chr 1|||Manual Length = 2397 Score = 24.6 bits (51), Expect = 9.6 Identities = 14/56 (25%), Positives = 24/56 (42%) Frame = +1 Query: 109 KTQPALVSPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKP 276 ++QP + P S + HPG W SSD I + + +D+ ++P Sbjct: 1785 ESQPPVEMPAESDTPLQNKLYHPGMW-----SSSDIRIPNNSSQLSIDSVRSGMRP 1835 >SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pombe|chr 2|||Manual Length = 368 Score = 24.6 bits (51), Expect = 9.6 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Frame = +3 Query: 306 SQSTPLSPVCGSPHPLLAGHRVEVIAPSSQGA--THVTYSAATIAVDN 443 S STP S +P+P + +V APSS A T T + A A N Sbjct: 78 STSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSN 125 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,252,837 Number of Sequences: 5004 Number of extensions: 46491 Number of successful extensions: 112 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 112 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 225926624 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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