Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1007
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    29   0.45 
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.0  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    27   1.8  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     27   1.8  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   3.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   4.2  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   4.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   5.5  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   7.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.6  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   9.6  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 983

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 360  RQEVDEESRRPGSVV*IGRGLCPAVDGCGLKR-LRIVVQMYVQPQRV 223
            R  V ++  RPGS + + R L P +D CG +  LR+  Q     Q V
Sbjct: 867  RGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMV 913


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 193 VIKLSSDYTIHSLWLNIHLDNY-SEALKPTAVHC 291
           V  L S +++H+L  N+ LDN  SE+ K +AV C
Sbjct: 67  VFNLYSRFSVHTLSHNLVLDNVSSESNKTSAVFC 100


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 239 TYIWTTILRRLSPQPSTAGHRPLPI 313
           TY + T+ RR +P+PS  G+R + +
Sbjct: 125 TYTYHTVRRRDTPEPSKVGNRKIRV 149


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 143 VSSNTTQAYSIRVDGTALSSYQATTLS 223
           V+ N  Q+YS  +DGTAL S  A  ++
Sbjct: 156 VNGNVNQSYSKGIDGTALPSTHANPVA 182


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 269 LSPQPSTAGHRPLPIYTTEPGLRLSSSTSCRP 364
           +SP PS AG++P P+ +      +S ST C P
Sbjct: 383 VSP-PSLAGNQPSPLSSPLTNSNVSPSTICSP 413


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 QPSTAGHRPLPIYTTEPGLRLSSSTSCRPP 367
           QP+  G  PLP  T+   LRL S    R P
Sbjct: 321 QPAGVGSVPLPAPTSSQSLRLGSLHRSRSP 350


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 357 AGHRVEVIAPSSQGATHVTYSAATIAVDNGIRPVLLKIN 473
           A HR  ++     G+ H+T    +  + NG+ P++  IN
Sbjct: 440 APHRRSILIVGD-GSLHLTVQEISATIRNGLTPIIFVIN 477


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 225 LVVVEHTSGQLF*GA*AHSRPLLDIGLSQSTPLSPVCGSPHPLLAGHRVEV 377
           LV V   +  +   A A+S  L    ++++ PL+P   S HP L+   V V
Sbjct: 228 LVYVSSDNPPVSTAASAYSSSLPISDVTRALPLAPASNSQHPSLSSQPVSV 278


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +1

Query: 97  SAQTKTQPALVSPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKP 276
           +A+T+ Q +   P P +     ++Q+      V+   SDY     +   HL++ S++ +P
Sbjct: 311 NAETENQRSSKPPAPKLESKSPALQNHASTQNVVSKRSDY--EKPFAEPHLNSASDSAEP 368


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +1

Query: 109  KTQPALVSPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKP 276
            ++QP +  P  S       + HPG W      SSD  I +    + +D+    ++P
Sbjct: 1785 ESQPPVEMPAESDTPLQNKLYHPGMW-----SSSDIRIPNNSSQLSIDSVRSGMRP 1835


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 306 SQSTPLSPVCGSPHPLLAGHRVEVIAPSSQGA--THVTYSAATIAVDN 443
           S STP S    +P+P  +    +V APSS  A  T  T + A  A  N
Sbjct: 78  STSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSN 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,837
Number of Sequences: 5004
Number of extensions: 46491
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)