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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1007
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0248 + 16413295-16414394,16416511-16416762,16416839-164170...    34   0.085
03_05_0371 + 23570246-23570359,23570499-23570575,23570600-235706...    31   0.79 
06_01_0995 - 7733808-7734089                                           30   1.0  
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462...    29   2.4  
05_03_0064 + 7946548-7946961                                           29   3.2  
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148...    28   4.2  
01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734...    28   4.2  
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621     28   5.6  
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233...    27   7.4  
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567...    27   7.4  
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402...    27   9.8  
02_04_0479 + 23265910-23266084,23266252-23266430                       27   9.8  
02_03_0027 + 14065720-14066328                                         27   9.8  

>12_02_0248 +
           16413295-16414394,16416511-16416762,16416839-16417055,
           16417216-16417353,16417493-16417669,16417744-16417851,
           16417925-16418392,16418493-16418570,16418673-16418756
          Length = 873

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGH 379
           PS +G  PLP+  T P L +SS+ +  P C  H
Sbjct: 831 PSASGPPPLPVMLTNPALSVSSALNGNPFCADH 863


>03_05_0371 +
           23570246-23570359,23570499-23570575,23570600-23570675,
           23570761-23570892,23570945-23571412,23571513-23571590,
           23571693-23571809
          Length = 353

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGH 379
           PS +G  PLP+  T P L +SS+ +    C  H
Sbjct: 300 PSASGPPPLPVMLTNPALSVSSALNGNSFCADH 332


>06_01_0995 - 7733808-7734089
          Length = 93

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 288 LLDIGLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQGATHV 410
           LL +G S+S P  PV  +  PLL G   EV+AP + G   V
Sbjct: 14  LLLLGSSRSWP--PVAAAARPLLQGDGGEVVAPPAGGGVGV 52


>02_05_0410 +
           28744716-28744841,28745361-28745965,28746151-28746270,
           28746597-28746737,28748626-28749370
          Length = 578

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 279 SRPLLDIGLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQG 398
           S+P+L     Q   +SP    P+P++AG  V++ AP + G
Sbjct: 177 SKPILPRAAMQLPSVSPRAIRPYPVMAGDTVKLGAPMAGG 216


>05_03_0064 + 7946548-7946961
          Length = 137

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 254 TILRRLSPQPSTAGHRPLPIYTTEPGLRLSSSTS 355
           T+LRRL P+P+T   R  P++   PGLR +++ +
Sbjct: 17  TLLRRLPPRPATTLERHPPVH---PGLRPAAAAA 47


>02_05_1326 -
           35712102-35712473,35712608-35712720,35712944-35714857,
           35714942-35715135,35715237-35716786,35716946-35717049,
           35717258-35717399,35717692-35717910
          Length = 1535

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 LLDIGLSQSTPLSPVCGSPHPLL 356
           L D  +SQS  + P+CGS  PL+
Sbjct: 270 LSDSSISQSNNIKPICGSSAPLI 292


>01_01_0930 +
           7347680-7347886,7348030-7348082,7348175-7348247,
           7348493-7348594,7348697-7348798,7348888-7348959,
           7349067-7349129,7349210-7349251,7349620-7349679,
           7349755-7349865,7350044-7350214,7350392-7350482,
           7350571-7350845
          Length = 473

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 266 RLSPQPSTAGHRPLPIYTTEPGLRLSSSTSC 358
           R  P  ++  H PLP     P LRLS+STSC
Sbjct: 7   RAHPLAASPLHTPLPA-RPRPQLRLSTSTSC 36


>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
          Length = 388

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 275 PQPSTAGHRPLPIYTTEPGLRLSSSTSCRPP 367
           P+P    HRP   YT  P   L    S +PP
Sbjct: 210 PRPQEVHHRPTKSYTGNPPQPLEKDASPQPP 240


>02_05_0181 -
           26522849-26522932,26523053-26523184,26523263-26523329,
           26523800-26524186,26524259-26524360,26524983-26525132,
           26525552-26525636,26525743-26525769,26525858-26526116,
           26526659-26526751,26526921-26527013,26527122-26527289,
           26527436-26527594,26528214-26528273,26528392-26528487
          Length = 653

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 296 HRPLPIYTTEPGLRLSSSTSCRPPCGG 376
           H PL   T   GL +SSS S   PC G
Sbjct: 292 HEPLLSTTRSTGLDISSSDSSDEPCNG 318


>01_07_0291 +
           42555233-42555444,42556515-42556550,42556652-42556796,
           42556885-42556938,42557130-42557260,42557830-42558056,
           42558670-42558846,42558928-42559076
          Length = 376

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 209 ATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLP 310
           A   +  CG   + T+ L RLSP P  + H PLP
Sbjct: 4   AAAAAVACG---MSTSFLIRLSPSPPASSHVPLP 34


>04_03_1004 +
           21637910-21638269,21638424-21638579,21640108-21640202,
           21640478-21640505,21640725-21640752,21642353-21642363
          Length = 225

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 275 PQPSTAGHRPLPIYTTEPGLRLSSSTSCRPP 367
           P+P+    RP P ++  P    SSS+S  PP
Sbjct: 14  PRPAGRAQRPPPPHSVAPKRASSSSSSTTPP 44


>02_04_0479 + 23265910-23266084,23266252-23266430
          Length = 117

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGHRT 385
           PSTA     P+ +  P + LS++ S  PP  GHR+
Sbjct: 10  PSTASPAATPLLS--PFITLSAAASLLPPLFGHRS 42


>02_03_0027 + 14065720-14066328
          Length = 202

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = -1

Query: 373 STRWPARSG*GEPQTGLSGVDWERPMSSSGRLW 275
           +  WP  +G G      S   W R  S  G +W
Sbjct: 2   TANWPRAAGSGWRSRSASAATWRRRASGGGEVW 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,094
Number of Sequences: 37544
Number of extensions: 352283
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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