Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1007
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0248 + 16413295-16414394,16416511-16416762,16416839-164170... 34 0.085
03_05_0371 + 23570246-23570359,23570499-23570575,23570600-235706... 31 0.79
06_01_0995 - 7733808-7734089 30 1.0
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 29 2.4
05_03_0064 + 7946548-7946961 29 3.2
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 28 4.2
01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734... 28 4.2
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 28 5.6
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 27 7.4
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567... 27 7.4
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402... 27 9.8
02_04_0479 + 23265910-23266084,23266252-23266430 27 9.8
02_03_0027 + 14065720-14066328 27 9.8
>12_02_0248 +
16413295-16414394,16416511-16416762,16416839-16417055,
16417216-16417353,16417493-16417669,16417744-16417851,
16417925-16418392,16418493-16418570,16418673-16418756
Length = 873
Score = 33.9 bits (74), Expect = 0.085
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGH 379
PS +G PLP+ T P L +SS+ + P C H
Sbjct: 831 PSASGPPPLPVMLTNPALSVSSALNGNPFCADH 863
>03_05_0371 +
23570246-23570359,23570499-23570575,23570600-23570675,
23570761-23570892,23570945-23571412,23571513-23571590,
23571693-23571809
Length = 353
Score = 30.7 bits (66), Expect = 0.79
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGH 379
PS +G PLP+ T P L +SS+ + C H
Sbjct: 300 PSASGPPPLPVMLTNPALSVSSALNGNSFCADH 332
>06_01_0995 - 7733808-7734089
Length = 93
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 288 LLDIGLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQGATHV 410
LL +G S+S P PV + PLL G EV+AP + G V
Sbjct: 14 LLLLGSSRSWP--PVAAAARPLLQGDGGEVVAPPAGGGVGV 52
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 279 SRPLLDIGLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQG 398
S+P+L Q +SP P+P++AG V++ AP + G
Sbjct: 177 SKPILPRAAMQLPSVSPRAIRPYPVMAGDTVKLGAPMAGG 216
>05_03_0064 + 7946548-7946961
Length = 137
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 254 TILRRLSPQPSTAGHRPLPIYTTEPGLRLSSSTS 355
T+LRRL P+P+T R P++ PGLR +++ +
Sbjct: 17 TLLRRLPPRPATTLERHPPVH---PGLRPAAAAA 47
>02_05_1326 -
35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 288 LLDIGLSQSTPLSPVCGSPHPLL 356
L D +SQS + P+CGS PL+
Sbjct: 270 LSDSSISQSNNIKPICGSSAPLI 292
>01_01_0930 +
7347680-7347886,7348030-7348082,7348175-7348247,
7348493-7348594,7348697-7348798,7348888-7348959,
7349067-7349129,7349210-7349251,7349620-7349679,
7349755-7349865,7350044-7350214,7350392-7350482,
7350571-7350845
Length = 473
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 266 RLSPQPSTAGHRPLPIYTTEPGLRLSSSTSC 358
R P ++ H PLP P LRLS+STSC
Sbjct: 7 RAHPLAASPLHTPLPA-RPRPQLRLSTSTSC 36
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 275 PQPSTAGHRPLPIYTTEPGLRLSSSTSCRPP 367
P+P HRP YT P L S +PP
Sbjct: 210 PRPQEVHHRPTKSYTGNPPQPLEKDASPQPP 240
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 296 HRPLPIYTTEPGLRLSSSTSCRPPCGG 376
H PL T GL +SSS S PC G
Sbjct: 292 HEPLLSTTRSTGLDISSSDSSDEPCNG 318
>01_07_0291 +
42555233-42555444,42556515-42556550,42556652-42556796,
42556885-42556938,42557130-42557260,42557830-42558056,
42558670-42558846,42558928-42559076
Length = 376
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 209 ATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLP 310
A + CG + T+ L RLSP P + H PLP
Sbjct: 4 AAAAAVACG---MSTSFLIRLSPSPPASSHVPLP 34
>04_03_1004 +
21637910-21638269,21638424-21638579,21640108-21640202,
21640478-21640505,21640725-21640752,21642353-21642363
Length = 225
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 275 PQPSTAGHRPLPIYTTEPGLRLSSSTSCRPP 367
P+P+ RP P ++ P SSS+S PP
Sbjct: 14 PRPAGRAQRPPPPHSVAPKRASSSSSSTTPP 44
>02_04_0479 + 23265910-23266084,23266252-23266430
Length = 117
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGHRT 385
PSTA P+ + P + LS++ S PP GHR+
Sbjct: 10 PSTASPAATPLLS--PFITLSAAASLLPPLFGHRS 42
>02_03_0027 + 14065720-14066328
Length = 202
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = -1
Query: 373 STRWPARSG*GEPQTGLSGVDWERPMSSSGRLW 275
+ WP +G G S W R S G +W
Sbjct: 2 TANWPRAAGSGWRSRSASAATWRRRASGGGEVW 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,094
Number of Sequences: 37544
Number of extensions: 352283
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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