BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1007 (547 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_02_0248 + 16413295-16414394,16416511-16416762,16416839-164170... 34 0.085 03_05_0371 + 23570246-23570359,23570499-23570575,23570600-235706... 31 0.79 06_01_0995 - 7733808-7734089 30 1.0 02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 29 2.4 05_03_0064 + 7946548-7946961 29 3.2 02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 28 4.2 01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734... 28 4.2 03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 28 5.6 02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 27 7.4 01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567... 27 7.4 04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402... 27 9.8 02_04_0479 + 23265910-23266084,23266252-23266430 27 9.8 02_03_0027 + 14065720-14066328 27 9.8 >12_02_0248 + 16413295-16414394,16416511-16416762,16416839-16417055, 16417216-16417353,16417493-16417669,16417744-16417851, 16417925-16418392,16418493-16418570,16418673-16418756 Length = 873 Score = 33.9 bits (74), Expect = 0.085 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +2 Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGH 379 PS +G PLP+ T P L +SS+ + P C H Sbjct: 831 PSASGPPPLPVMLTNPALSVSSALNGNPFCADH 863 >03_05_0371 + 23570246-23570359,23570499-23570575,23570600-23570675, 23570761-23570892,23570945-23571412,23571513-23571590, 23571693-23571809 Length = 353 Score = 30.7 bits (66), Expect = 0.79 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGH 379 PS +G PLP+ T P L +SS+ + C H Sbjct: 300 PSASGPPPLPVMLTNPALSVSSALNGNSFCADH 332 >06_01_0995 - 7733808-7734089 Length = 93 Score = 30.3 bits (65), Expect = 1.0 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = +3 Query: 288 LLDIGLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQGATHV 410 LL +G S+S P PV + PLL G EV+AP + G V Sbjct: 14 LLLLGSSRSWP--PVAAAARPLLQGDGGEVVAPPAGGGVGV 52 >02_05_0410 + 28744716-28744841,28745361-28745965,28746151-28746270, 28746597-28746737,28748626-28749370 Length = 578 Score = 29.1 bits (62), Expect = 2.4 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 279 SRPLLDIGLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQG 398 S+P+L Q +SP P+P++AG V++ AP + G Sbjct: 177 SKPILPRAAMQLPSVSPRAIRPYPVMAGDTVKLGAPMAGG 216 >05_03_0064 + 7946548-7946961 Length = 137 Score = 28.7 bits (61), Expect = 3.2 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +2 Query: 254 TILRRLSPQPSTAGHRPLPIYTTEPGLRLSSSTS 355 T+LRRL P+P+T R P++ PGLR +++ + Sbjct: 17 TLLRRLPPRPATTLERHPPVH---PGLRPAAAAA 47 >02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857, 35714942-35715135,35715237-35716786,35716946-35717049, 35717258-35717399,35717692-35717910 Length = 1535 Score = 28.3 bits (60), Expect = 4.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 288 LLDIGLSQSTPLSPVCGSPHPLL 356 L D +SQS + P+CGS PL+ Sbjct: 270 LSDSSISQSNNIKPICGSSAPLI 292 >01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247, 7348493-7348594,7348697-7348798,7348888-7348959, 7349067-7349129,7349210-7349251,7349620-7349679, 7349755-7349865,7350044-7350214,7350392-7350482, 7350571-7350845 Length = 473 Score = 28.3 bits (60), Expect = 4.2 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +2 Query: 266 RLSPQPSTAGHRPLPIYTTEPGLRLSSSTSC 358 R P ++ H PLP P LRLS+STSC Sbjct: 7 RAHPLAASPLHTPLPA-RPRPQLRLSTSTSC 36 >03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 Length = 388 Score = 27.9 bits (59), Expect = 5.6 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = +2 Query: 275 PQPSTAGHRPLPIYTTEPGLRLSSSTSCRPP 367 P+P HRP YT P L S +PP Sbjct: 210 PRPQEVHHRPTKSYTGNPPQPLEKDASPQPP 240 >02_05_0181 - 26522849-26522932,26523053-26523184,26523263-26523329, 26523800-26524186,26524259-26524360,26524983-26525132, 26525552-26525636,26525743-26525769,26525858-26526116, 26526659-26526751,26526921-26527013,26527122-26527289, 26527436-26527594,26528214-26528273,26528392-26528487 Length = 653 Score = 27.5 bits (58), Expect = 7.4 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 296 HRPLPIYTTEPGLRLSSSTSCRPPCGG 376 H PL T GL +SSS S PC G Sbjct: 292 HEPLLSTTRSTGLDISSSDSSDEPCNG 318 >01_07_0291 + 42555233-42555444,42556515-42556550,42556652-42556796, 42556885-42556938,42557130-42557260,42557830-42558056, 42558670-42558846,42558928-42559076 Length = 376 Score = 27.5 bits (58), Expect = 7.4 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 209 ATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLP 310 A + CG + T+ L RLSP P + H PLP Sbjct: 4 AAAAAVACG---MSTSFLIRLSPSPPASSHVPLP 34 >04_03_1004 + 21637910-21638269,21638424-21638579,21640108-21640202, 21640478-21640505,21640725-21640752,21642353-21642363 Length = 225 Score = 27.1 bits (57), Expect = 9.8 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +2 Query: 275 PQPSTAGHRPLPIYTTEPGLRLSSSTSCRPP 367 P+P+ RP P ++ P SSS+S PP Sbjct: 14 PRPAGRAQRPPPPHSVAPKRASSSSSSTTPP 44 >02_04_0479 + 23265910-23266084,23266252-23266430 Length = 117 Score = 27.1 bits (57), Expect = 9.8 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +2 Query: 281 PSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGGHRT 385 PSTA P+ + P + LS++ S PP GHR+ Sbjct: 10 PSTASPAATPLLS--PFITLSAAASLLPPLFGHRS 42 >02_03_0027 + 14065720-14066328 Length = 202 Score = 27.1 bits (57), Expect = 9.8 Identities = 10/33 (30%), Positives = 13/33 (39%) Frame = -1 Query: 373 STRWPARSG*GEPQTGLSGVDWERPMSSSGRLW 275 + WP +G G S W R S G +W Sbjct: 2 TANWPRAAGSGWRSRSASAATWRRRASGGGEVW 34 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,423,094 Number of Sequences: 37544 Number of extensions: 352283 Number of successful extensions: 942 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 942 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1222086348 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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