Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1007
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.022
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)                   33   0.12 
SB_3222| Best HMM Match : DUF733 (HMM E-Value=4.2)                     30   1.4  
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)                 29   1.9  
SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)                     27   7.6  
SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)                 27   7.6  
SB_28319| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)                 27   7.6  
SB_17388| Best HMM Match : rve (HMM E-Value=8.2e-17)                   27   7.6  
SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               27   7.6  

>SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = +2

Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
           S  +T +Y+     T+ +SY +TT  T C  +Y  TT     +    T  + P P YT+ 
Sbjct: 73  SYTSTTSYTSTTSYTSTTSYTSTTSYT-CTTSYTSTTSYTSTTSYTPTTSYTPTPSYTST 131

Query: 326 PGLRLSSSTSCRP 364
           P    +SSTS  P
Sbjct: 132 PS--YTSSTSYTP 142


>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
          Length = 267

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 158 TQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTEPGLR 337
           T +Y+     T+ +SY  TT  T    +Y  TT     +   ST  + P P YT+ P   
Sbjct: 140 TPSYTSTTSYTSTTSYTPTTSYTPTP-SYTSTTSYTSTTSYTSTTSYTPTPSYTSTPSYT 198

Query: 338 LSSSTSC 358
            ++S +C
Sbjct: 199 STTSYTC 205


>SB_3222| Best HMM Match : DUF733 (HMM E-Value=4.2)
          Length = 399

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 257 ILRRLSPQPST-AGHRPLPIYTTEPGLRLSSSTSCRPPCGGHR 382
           I+R++SP   T     P P +T     + + +  C P CG H+
Sbjct: 174 IIRKISPNQETEVAGPPFPSFTPSTSNQKADNNVCPPTCGHHQ 216


>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
          Length = 1020

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 RWYGVIKLSSDYTIHSLWLNIHLDNYSEALKPTAVH 288
           RWY   +L+ D    SLW ++ L  YS  L+P A+H
Sbjct: 590 RWY---RLTQD---SSLWTDLDLAQYSTKLQPAAIH 619


>SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 912

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 293 GH-RPLPIYTTEPGLRLS-SSTSCRPPCGGH 379
           GH RP P+++TEP +R++  ST  R   G H
Sbjct: 742 GHTRPYPVFSTEPYIRVTLQSTESRIVSGNH 772


>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 293 GHRP--LPIYTTEPGLRLSSSTSCRPPCGG 376
           G+RP  LP+  T  GL +  +TSC P  GG
Sbjct: 463 GYRPEKLPLRRTPDGLAILDNTSCGPVFGG 492


>SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)
          Length = 784

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +1

Query: 112 TQPALVSPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKPTAV 285
           T P  + P  S   + TSIQHPG +Y      S   +++    +H  +   +++ T++
Sbjct: 122 TAPRSILPVYSTPVHTTSIQHPGPYYQYTAPRSILPVYN--TPVHTTDIQHSVRTTSI 177


>SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)
          Length = 1052

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 201 AIKRLHYPLVVVEHTSGQL 257
           A+KR+HYP+V +E  + +L
Sbjct: 231 ALKRVHYPMVTIEEVADKL 249


>SB_28319| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
          Length = 179

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 524 TNINKLTLDN*IKLNCLVYFE*YWSYTIIYRYSSSGIRNVGRPLARWCD 378
           ++ + + LDN  KLNC +Y +    Y +I   S++G+ N    L  + D
Sbjct: 49  SSCDPVKLDNTSKLNCFLYAD----YLVILSDSATGLENCLHKLKMYAD 93


>SB_17388| Best HMM Match : rve (HMM E-Value=8.2e-17)
          Length = 441

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +2

Query: 104 KRRRSPRWCLRALVSSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQP 283
           KRR++P W   A   S +    +   D  A+ +     L   C  TY +T   + ++ Q 
Sbjct: 2   KRRKTPSWRTLAPALSPSATQLAACCDAAAVPALHLGGLFPYCAYTYAYTYTYKMIADQF 61

Query: 284 STAGH 298
            +A H
Sbjct: 62  WSAMH 66


>SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 201 AIKRLHYPLVVVEHTSGQL 257
           A+KR+HYP+V +E  + +L
Sbjct: 231 ALKRVHYPMVTIEEVADKL 249


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 340  EPQTGLSGVDWERPMSSSGRLW 275
            +PQ  +S VDW+RP   SG+ W
Sbjct: 1134 QPQNTVS-VDWDRPEVDSGKSW 1154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,258,734
Number of Sequences: 59808
Number of extensions: 387352
Number of successful extensions: 855
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)