Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1007
         (547 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         28   0.23 
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          25   1.6  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   5.0  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          23   5.0  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    23   8.7  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 27.9 bits (59), Expect = 0.23
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 445  PLSTAIVAAEYVTWVAP 395
            PLST +  AEY  WVAP
Sbjct: 1934 PLSTGVTIAEYGHWVAP 1950


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 300 GLSQSTPLSPVCGSPHPLLAGH 365
           G  Q  P   +CG+ +P+L GH
Sbjct: 7   GARQILPEDSLCGASYPILNGH 28


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 515 LYWWEPLIGFL 547
           +YWW PLI  L
Sbjct: 349 VYWWTPLIALL 359


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 297 IGLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQGATHVT 413
           IG   +T L P+   P P+LA H      P  Q  T  T
Sbjct: 562 IGSGSTTRLPPL-HQPFPMLANHAGGGAIPEGQEPTSTT 599


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 258 F*GA*AHSRPLLDIGLS 308
           F G+ AH +PLL +G+S
Sbjct: 334 FKGSPAHRKPLLSMGIS 350


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,908
Number of Sequences: 2352
Number of extensions: 12651
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50460840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)