Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1007
(547 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK127434-1|BAC86978.1| 292|Homo sapiens protein ( Homo sapiens ... 33 0.65
AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr... 31 2.6
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr... 31 2.6
AK055513-1|BAB70939.1| 131|Homo sapiens protein ( Homo sapiens ... 30 6.1
>AK127434-1|BAC86978.1| 292|Homo sapiens protein ( Homo sapiens
cDNA FLJ45526 fis, clone BRTHA2027227. ).
Length = 292
Score = 33.1 bits (72), Expect = 0.65
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 275 PQPSTAGHRPLPIYT-TEPGLRLSSSTSCRPPCG 373
PQ ++ GH PLP+ T T P + CRP CG
Sbjct: 188 PQSASRGHLPLPLPTPTTPCISQPPGRRCRPHCG 221
>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
protein.
Length = 4262
Score = 31.1 bits (67), Expect = 2.6
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
S +T SI V T ++S + TLST T T ++S P+TA +P T
Sbjct: 1863 SEGSTALTSIPVSTTTVASSETNTLSTTPAVTSTPVTTYAQVSSSPTTADGSSMPTSTPR 1922
Query: 326 PG 331
G
Sbjct: 1923 EG 1924
Score = 31.1 bits (67), Expect = 2.6
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYT-T 322
S +T SI V T ++S +A+TLST T I T S P+TA +PI T +
Sbjct: 2865 SEGSTLLTSIPVSTTPVASSEASTLSTTPVDTSIPVTTSTEGSSSPTTAEGTSMPISTPS 2924
Query: 323 EPGLRLSSSTSCRPPCGG 376
E L+S P G
Sbjct: 2925 EVSTPLTSILVSTVPVAG 2942
Score = 30.7 bits (66), Expect = 3.5
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +2
Query: 155 TTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTEPGL 334
+T S+ V T ++S +A+TLST T T S P+TA LP TT G
Sbjct: 1218 STPLTSMPVRHTPVASSEASTLSTSPVDTSTPVTTSAETSSSPTTAEGTSLPTSTTSEGS 1277
Query: 335 RLSSS 349
L +S
Sbjct: 1278 TLLTS 1282
Score = 30.7 bits (66), Expect = 3.5
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
S +T S+ V+ T ++S +A TLST T T + S P+TA +PI T
Sbjct: 2806 SETSTPLTSMPVNHTPVASSEAGTLSTTPVDTSTPVTTSTKASSSPTTAEGIVVPISTAS 2865
Query: 326 PGLRLSSS 349
G L +S
Sbjct: 2866 EGSTLLTS 2873
Score = 30.3 bits (65), Expect = 4.6
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
S +T S+ V T L+S +A+TLST T T S P+T +PI T
Sbjct: 743 SEGSTPLTSMPVSKTLLTSSEASTLSTTPLDTSTHITTSTEASCSPTTTEGTSMPISTPS 802
Query: 326 PGLRLSSS 349
G L +S
Sbjct: 803 EGSPLLTS 810
Score = 29.9 bits (64), Expect = 6.1
Identities = 24/68 (35%), Positives = 30/68 (44%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
S TT S+ V T + S +A TLST T T S P+TA +PI T
Sbjct: 2452 SEGTTPLASMPVSTTPVVSSEAGTLSTTPVDTSTPMTTSTEASSSPTTAEDIVVPISTAS 2511
Query: 326 PGLRLSSS 349
G L +S
Sbjct: 2512 EGSTLLTS 2519
Score = 29.9 bits (64), Expect = 6.1
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYT 319
S +T S+ V L+S +A+TLST T I T S P+TA +PI T
Sbjct: 2570 SEGSTPLRSMPVSTKPLASSEASTLSTTPVDTSIPVTTSTETSSSPTTAKDTSMPIST 2627
>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
protein.
Length = 4493
Score = 31.1 bits (67), Expect = 2.6
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
S +T SI V T ++S + TLST T T ++S P+TA +P T
Sbjct: 1863 SEGSTALTSIPVSTTTVASSETNTLSTTPAVTSTPVTTYAQVSSSPTTADGSSMPTSTPR 1922
Query: 326 PG 331
G
Sbjct: 1923 EG 1924
Score = 31.1 bits (67), Expect = 2.6
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYT-T 322
S +T SI V T ++S +A+TLST T I T S P+TA +PI T +
Sbjct: 2865 SEGSTLLTSIPVSTTPVASSEASTLSTTPVDTSIPVTTSTEGSSSPTTAEGTSMPISTPS 2924
Query: 323 EPGLRLSSSTSCRPPCGG 376
E L+S P G
Sbjct: 2925 EVSTPLTSILVSTVPVAG 2942
Score = 30.7 bits (66), Expect = 3.5
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +2
Query: 155 TTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTEPGL 334
+T S+ V T ++S +A+TLST T T S P+TA LP TT G
Sbjct: 1218 STPLTSMPVRHTPVASSEASTLSTSPVDTSTPVTTSAETSSSPTTAEGTSLPTSTTSEGS 1277
Query: 335 RLSSS 349
L +S
Sbjct: 1278 TLLTS 1282
Score = 30.7 bits (66), Expect = 3.5
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
S +T S+ V+ T ++S +A TLST T T + S P+TA +PI T
Sbjct: 2806 SETSTPLTSMPVNHTPVASSEAGTLSTTPVDTSTPVTTSTKASSSPTTAEGIVVPISTAS 2865
Query: 326 PGLRLSSS 349
G L +S
Sbjct: 2866 EGSTLLTS 2873
Score = 30.3 bits (65), Expect = 4.6
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
S +T S+ V T L+S +A+TLST T T S P+T +PI T
Sbjct: 743 SEGSTPLTSMPVSKTLLTSSEASTLSTTPLDTSTHITTSTEASCSPTTTEGTSMPISTPS 802
Query: 326 PGLRLSSS 349
G L +S
Sbjct: 803 EGSPLLTS 810
Score = 29.9 bits (64), Expect = 6.1
Identities = 24/68 (35%), Positives = 30/68 (44%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325
S TT S+ V T + S +A TLST T T S P+TA +PI T
Sbjct: 2452 SEGTTPLASMPVSTTPVVSSEAGTLSTTPVDTSTPMTTSTEASSSPTTAEDIVVPISTAS 2511
Query: 326 PGLRLSSS 349
G L +S
Sbjct: 2512 EGSTLLTS 2519
Score = 29.9 bits (64), Expect = 6.1
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +2
Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYT 319
S +T S+ V L+S +A+TLST T I T S P+TA +PI T
Sbjct: 2570 SEGSTPLRSMPVSTKPLASSEASTLSTTPVDTSIPVTTSTETSSSPTTAKDTSMPIST 2627
>AK055513-1|BAB70939.1| 131|Homo sapiens protein ( Homo sapiens
cDNA FLJ30951 fis, clone HCASM1000115. ).
Length = 131
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 300 GLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQGATH 407
G +QS+ SP G P PL A HR +APS A H
Sbjct: 66 GHAQSS--SPAEGKPRPLAAVHRCWPLAPSRSTACH 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,801,898
Number of Sequences: 237096
Number of extensions: 1989844
Number of successful extensions: 8283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8283
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -