BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1007 (547 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AK127434-1|BAC86978.1| 292|Homo sapiens protein ( Homo sapiens ... 33 0.65 AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr... 31 2.6 AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr... 31 2.6 AK055513-1|BAB70939.1| 131|Homo sapiens protein ( Homo sapiens ... 30 6.1 >AK127434-1|BAC86978.1| 292|Homo sapiens protein ( Homo sapiens cDNA FLJ45526 fis, clone BRTHA2027227. ). Length = 292 Score = 33.1 bits (72), Expect = 0.65 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +2 Query: 275 PQPSTAGHRPLPIYT-TEPGLRLSSSTSCRPPCG 373 PQ ++ GH PLP+ T T P + CRP CG Sbjct: 188 PQSASRGHLPLPLPTPTTPCISQPPGRRCRPHCG 221 >AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 protein. Length = 4262 Score = 31.1 bits (67), Expect = 2.6 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325 S +T SI V T ++S + TLST T T ++S P+TA +P T Sbjct: 1863 SEGSTALTSIPVSTTTVASSETNTLSTTPAVTSTPVTTYAQVSSSPTTADGSSMPTSTPR 1922 Query: 326 PG 331 G Sbjct: 1923 EG 1924 Score = 31.1 bits (67), Expect = 2.6 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYT-T 322 S +T SI V T ++S +A+TLST T I T S P+TA +PI T + Sbjct: 2865 SEGSTLLTSIPVSTTPVASSEASTLSTTPVDTSIPVTTSTEGSSSPTTAEGTSMPISTPS 2924 Query: 323 EPGLRLSSSTSCRPPCGG 376 E L+S P G Sbjct: 2925 EVSTPLTSILVSTVPVAG 2942 Score = 30.7 bits (66), Expect = 3.5 Identities = 23/65 (35%), Positives = 31/65 (47%) Frame = +2 Query: 155 TTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTEPGL 334 +T S+ V T ++S +A+TLST T T S P+TA LP TT G Sbjct: 1218 STPLTSMPVRHTPVASSEASTLSTSPVDTSTPVTTSAETSSSPTTAEGTSLPTSTTSEGS 1277 Query: 335 RLSSS 349 L +S Sbjct: 1278 TLLTS 1282 Score = 30.7 bits (66), Expect = 3.5 Identities = 23/68 (33%), Positives = 33/68 (48%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325 S +T S+ V+ T ++S +A TLST T T + S P+TA +PI T Sbjct: 2806 SETSTPLTSMPVNHTPVASSEAGTLSTTPVDTSTPVTTSTKASSSPTTAEGIVVPISTAS 2865 Query: 326 PGLRLSSS 349 G L +S Sbjct: 2866 EGSTLLTS 2873 Score = 30.3 bits (65), Expect = 4.6 Identities = 23/68 (33%), Positives = 31/68 (45%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325 S +T S+ V T L+S +A+TLST T T S P+T +PI T Sbjct: 743 SEGSTPLTSMPVSKTLLTSSEASTLSTTPLDTSTHITTSTEASCSPTTTEGTSMPISTPS 802 Query: 326 PGLRLSSS 349 G L +S Sbjct: 803 EGSPLLTS 810 Score = 29.9 bits (64), Expect = 6.1 Identities = 24/68 (35%), Positives = 30/68 (44%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325 S TT S+ V T + S +A TLST T T S P+TA +PI T Sbjct: 2452 SEGTTPLASMPVSTTPVVSSEAGTLSTTPVDTSTPMTTSTEASSSPTTAEDIVVPISTAS 2511 Query: 326 PGLRLSSS 349 G L +S Sbjct: 2512 EGSTLLTS 2519 Score = 29.9 bits (64), Expect = 6.1 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYT 319 S +T S+ V L+S +A+TLST T I T S P+TA +PI T Sbjct: 2570 SEGSTPLRSMPVSTKPLASSEASTLSTTPVDTSIPVTTSTETSSSPTTAKDTSMPIST 2627 >AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 protein. Length = 4493 Score = 31.1 bits (67), Expect = 2.6 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325 S +T SI V T ++S + TLST T T ++S P+TA +P T Sbjct: 1863 SEGSTALTSIPVSTTTVASSETNTLSTTPAVTSTPVTTYAQVSSSPTTADGSSMPTSTPR 1922 Query: 326 PG 331 G Sbjct: 1923 EG 1924 Score = 31.1 bits (67), Expect = 2.6 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYT-T 322 S +T SI V T ++S +A+TLST T I T S P+TA +PI T + Sbjct: 2865 SEGSTLLTSIPVSTTPVASSEASTLSTTPVDTSIPVTTSTEGSSSPTTAEGTSMPISTPS 2924 Query: 323 EPGLRLSSSTSCRPPCGG 376 E L+S P G Sbjct: 2925 EVSTPLTSILVSTVPVAG 2942 Score = 30.7 bits (66), Expect = 3.5 Identities = 23/65 (35%), Positives = 31/65 (47%) Frame = +2 Query: 155 TTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTEPGL 334 +T S+ V T ++S +A+TLST T T S P+TA LP TT G Sbjct: 1218 STPLTSMPVRHTPVASSEASTLSTSPVDTSTPVTTSAETSSSPTTAEGTSLPTSTTSEGS 1277 Query: 335 RLSSS 349 L +S Sbjct: 1278 TLLTS 1282 Score = 30.7 bits (66), Expect = 3.5 Identities = 23/68 (33%), Positives = 33/68 (48%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325 S +T S+ V+ T ++S +A TLST T T + S P+TA +PI T Sbjct: 2806 SETSTPLTSMPVNHTPVASSEAGTLSTTPVDTSTPVTTSTKASSSPTTAEGIVVPISTAS 2865 Query: 326 PGLRLSSS 349 G L +S Sbjct: 2866 EGSTLLTS 2873 Score = 30.3 bits (65), Expect = 4.6 Identities = 23/68 (33%), Positives = 31/68 (45%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325 S +T S+ V T L+S +A+TLST T T S P+T +PI T Sbjct: 743 SEGSTPLTSMPVSKTLLTSSEASTLSTTPLDTSTHITTSTEASCSPTTTEGTSMPISTPS 802 Query: 326 PGLRLSSS 349 G L +S Sbjct: 803 EGSPLLTS 810 Score = 29.9 bits (64), Expect = 6.1 Identities = 24/68 (35%), Positives = 30/68 (44%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYTTE 325 S TT S+ V T + S +A TLST T T S P+TA +PI T Sbjct: 2452 SEGTTPLASMPVSTTPVVSSEAGTLSTTPVDTSTPMTTSTEASSSPTTAEDIVVPISTAS 2511 Query: 326 PGLRLSSS 349 G L +S Sbjct: 2512 EGSTLLTS 2519 Score = 29.9 bits (64), Expect = 6.1 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = +2 Query: 146 SSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPIYT 319 S +T S+ V L+S +A+TLST T I T S P+TA +PI T Sbjct: 2570 SEGSTPLRSMPVSTKPLASSEASTLSTTPVDTSIPVTTSTETSSSPTTAKDTSMPIST 2627 >AK055513-1|BAB70939.1| 131|Homo sapiens protein ( Homo sapiens cDNA FLJ30951 fis, clone HCASM1000115. ). Length = 131 Score = 29.9 bits (64), Expect = 6.1 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 300 GLSQSTPLSPVCGSPHPLLAGHRVEVIAPSSQGATH 407 G +QS+ SP G P PL A HR +APS A H Sbjct: 66 GHAQSS--SPAEGKPRPLAAVHRCWPLAPSRSTACH 99 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 83,801,898 Number of Sequences: 237096 Number of extensions: 1989844 Number of successful extensions: 8283 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 8011 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8283 length of database: 76,859,062 effective HSP length: 86 effective length of database: 56,468,806 effective search space used: 5364536570 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -