Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1007
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical p...    29   1.7  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   1.7  
AF040648-7|AAK26140.1|  386|Caenorhabditis elegans Lethal protei...    29   1.7  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   1.7  
Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81527-8|CAI91171.1|  537|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81527-7|CAI91170.1|  517|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   8.8  
AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    27   8.8  
AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.      27   8.8  

>Z93379-10|CAB07594.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 245 IWTTILRRLSPQPSTAGHRPLPIYTTEPGLRLSSSTS 355
           IWT  L  L+P P+ A  RP P  T     +L ++T+
Sbjct: 430 IWTNTLYNLNPLPTDAKDRPDPKSTKPVSFKLPTTTT 466


>Z92830-17|CAB07364.1|  508|Caenorhabditis elegans Hypothetical
           protein F21H7.2 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 245 IWTTILRRLSPQPSTAGHRPLPIYTTEPGLRLSSSTS 355
           IWT  L  L+P P+ A  RP P  T     +L ++T+
Sbjct: 430 IWTNTLYNLNPLPTDAKDRPDPKSTKPVSFKLPTTTT 466


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 32   WLL*ILYQLIVVSLHCCSYCWCQLKRRRSPR 124
            WLL  L   ++++L CC   WC  +R RS +
Sbjct: 3910 WLLLPLLAALLLTLLCCCIPWCLKRRYRSSK 3940


>AF040648-7|AAK26140.1|  386|Caenorhabditis elegans Lethal protein
           805, isoform c protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 32  WLL*ILYQLIVVSLHCCSYCWCQLKRRRSPR 124
           WLL  L   ++++L CC   WC  +R RS +
Sbjct: 19  WLLLPLLAALLLTLLCCCIPWCLKRRYRSSK 49


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 32   WLL*ILYQLIVVSLHCCSYCWCQLKRRRSPR 124
            WLL  L   ++++L CC   WC  +R RS +
Sbjct: 3910 WLLLPLLAALLLTLLCCCIPWCLKRRYRSSK 3940


>Z81527-9|CAI91172.1|  577|Caenorhabditis elegans Hypothetical
           protein F35E12.7d protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 130 SPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKPTAVH 288
           SP     EY  +   P   Y VI  + + T  + +  I + NY + +KPT  +
Sbjct: 95  SPAEKEVEYAVNQTLP---YEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTY 144


>Z81527-8|CAI91171.1|  537|Caenorhabditis elegans Hypothetical
           protein F35E12.7c protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 130 SPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKPTAVH 288
           SP     EY  +   P   Y VI  + + T  + +  I + NY + +KPT  +
Sbjct: 95  SPAEKEVEYAVNQTLP---YEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTY 144


>Z81527-7|CAI91170.1|  517|Caenorhabditis elegans Hypothetical
           protein F35E12.7b protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 130 SPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKPTAVH 288
           SP     EY  +   P   Y VI  + + T  + +  I + NY + +KPT  +
Sbjct: 95  SPAEKEVEYAVNQTLP---YEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTY 144


>Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical
           protein F35E12.7a protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 130 SPCPSVFEYDTSIQHPGRWYGVIKLSSDYTIHSLWLNIHLDNYSEALKPTAVH 288
           SP     EY  +   P   Y VI  + + T  + +  I + NY + +KPT  +
Sbjct: 95  SPAEKEVEYAVNQTLP---YEVISKTGNLTFFATYTYIDMTNYQQVIKPTGTY 144



 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/78 (25%), Positives = 38/78 (48%)
 Frame = +2

Query: 134 RALVSSNTTQAYSIRVDGTALSSYQATTLSTRCG*TYIWTTILRRLSPQPSTAGHRPLPI 313
           +++V++N + +       T+++   +TT STR       TT  ++L+   STA   P+PI
Sbjct: 521 QSIVTTNKSSSPITSKTTTSINVSSSTTKSTR---PMQSTTTYQKLAQASSTASTTPIPI 577

Query: 314 YTTEPGLRLSSSTSCRPP 367
            T        ++ S + P
Sbjct: 578 TTQNISTASIATPSTKTP 595


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 336  GSPHPLLAGHRVEVIAPSSQGATHVTYSAATIAVDNG 446
            GSPHPL   H   + +  S  A+  T  + TI +  G
Sbjct: 1139 GSPHPLPLHHEHPLTSHDSSAASSSTAPSKTITIRKG 1175


>Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 392 ARWCDDLHTVAGKKWMRRAADRAQWCRLGEAYVQQW 285
           A +  D+ T AGK+W+        +    + Y+QQW
Sbjct: 649 ASFAHDVGTAAGKEWVIVNGQNVTYTINDQCYLQQW 684


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 336  GSPHPLLAGHRVEVIAPSSQGATHVTYSAATIAVDNG 446
            GSPHPL   H   + +  S  A+  T  + TI +  G
Sbjct: 1139 GSPHPLPLHHEHPLTSHDSSAASSSTAPSKTITIRKG 1175


>AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 392 ARWCDDLHTVAGKKWMRRAADRAQWCRLGEAYVQQW 285
           A +  D+ T AGK+W+        +    + Y+QQW
Sbjct: 649 ASFAHDVGTAAGKEWVIVNGQNVTYTINDQCYLQQW 684


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 380 DDLHTVAGKKWMRRAADRAQWCRLGE 303
           DD  T+  K+  R AADRA+W R+ E
Sbjct: 56  DDKSTMTAKE-RRAAADRAKWQRMSE 80


>AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.
          Length = 865

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 392 ARWCDDLHTVAGKKWMRRAADRAQWCRLGEAYVQQW 285
           A +  D+ T AGK+W+        +    + Y+QQW
Sbjct: 649 ASFAHDVGTAAGKEWVIVNGQNVTYTINDQCYLQQW 684


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,870
Number of Sequences: 27780
Number of extensions: 272514
Number of successful extensions: 682
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)