Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1007
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09430.1 68418.m01092 hydrolase, alpha/beta fold family prote...    30   1.2  
At2g19710.1 68415.m02303 expressed protein   contains Pfam profi...    29   1.5  
At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low sim...    28   4.7  
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa...    27   6.2  
At4g07530.1 68417.m01179 hypothetical protein                          27   6.2  
At1g76020.1 68414.m08826 expressed protein                             27   6.2  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    27   8.2  
At2g25660.1 68415.m03075 expressed protein                             27   8.2  

>At5g09430.1 68418.m01092 hydrolase, alpha/beta fold family protein
           low similarity to hydrolases from Rhodococcus sp. EtbD1
           GI:3273239, EtbD2 GI:3273241; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 303

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 253 NYSEALKPTAVHCWT*ASPNLHH*ARSAALLIH-FLPATVWRSSHHL 390
           ++  ++  TA+HCW   SPN    ++   LL+H F    +W+   HL
Sbjct: 38  SHGNSIASTAMHCWIPKSPNR---SKPNLLLLHGFGANAMWQYGEHL 81


>At2g19710.1 68415.m02303 expressed protein   contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 937

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 97  SAQTKTQPALVSPCPSVFEYDTS-IQHPGR 183
           ++ T+T+P+ + P PS  + D S +QHPGR
Sbjct: 738 ASNTETRPSFMPPHPSSSDEDDSDMQHPGR 767


>At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low
            similarity to breast cancer susceptibility protein
            [Gallus gallus] GI:19568157; contains Pfam profile
            PF00634: BRCA2 repeat
          Length = 1155

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 466  LSNTGRIPLSTAIVAAEYVTWVAPWLDGAMTSTRW 362
            LSN G IPLS+    A YV +V       +   +W
Sbjct: 998  LSNLGEIPLSSEFDIAAYVVYVGDAYTDVLQKKQW 1032


>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 616

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 389 RWCDDLHTVAGKKWMRRAADRAQW 318
           RWC  L T    +W+R+   R  W
Sbjct: 498 RWCSRLSTGRLNRWLRKVMSRHSW 521


>At4g07530.1 68417.m01179 hypothetical protein 
          Length = 818

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 254 TILRRLSPQPSTAGHRPLPIYTTEPGLRLSSSTSCRPPCGG 376
           T+LRR+ P  S+     L      P LR+  + +  P C G
Sbjct: 324 TLLRRVPPNSSSTSELSLIRRMRRPSLRVQRANAGAPACAG 364


>At1g76020.1 68414.m08826 expressed protein
          Length = 225

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 241 IHLDNYSEALKPTAVHCWT*ASPNLHH*ARSAALLIHFLP 360
           I ++ Y + + P +   W      LHH     ALL+H LP
Sbjct: 43  ILIEAYFDPVCPDSRDSWPPLKQALHHYGSRVALLLHLLP 82


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            similar to WDR protein, form B (GI:14970593) [Mus
            musculus]
          Length = 1589

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 260  LRRLSPQPSTAGHRPLPIYTTEPGLRLSSSTSCRPPCG 373
            L +LS +P    HR + IY+ EPG   SSS   +   G
Sbjct: 1031 LEQLSSKPLEENHRVIGIYSREPG---SSSVDAKGDSG 1065


>At2g25660.1 68415.m03075 expressed protein 
          Length = 2146

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 457  TGRIPLSTAIVAAEY-VTWVAPWLDGAMTSTR 365
            TG   LS A++   + + W AP  DG++T  R
Sbjct: 948  TGETKLSGALLKPRFDIKWAAPKADGSLTDAR 979


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,145
Number of Sequences: 28952
Number of extensions: 257389
Number of successful extensions: 618
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)