Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1005
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B5B65 Cluster: PREDICTED: similar to alpha-endo...   100   6e-20
UniRef50_Q9VUB8 Cluster: CG6513-PA, isoform A; n=5; Endopterygot...    94   2e-18
UniRef50_O43768 Cluster: Alpha-endosulfine; n=59; Euteleostomi|R...    66   7e-10
UniRef50_P56211 Cluster: cAMP-regulated phosphoprotein 19; n=40;...    66   9e-10
UniRef50_A7SV53 Cluster: Predicted protein; n=1; Nematostella ve...    54   2e-06
UniRef50_UPI00005879F2 Cluster: PREDICTED: hypothetical protein;...    52   2e-05
UniRef50_Q86EP6 Cluster: Clone ZZD1559 mRNA sequence; n=1; Schis...    48   2e-04
UniRef50_Q5D9K4 Cluster: SJCHGC02194 protein; n=1; Schistosoma j...    46   6e-04
UniRef50_Q9XU56 Cluster: Putative uncharacterized protein; n=2; ...    37   0.49 
UniRef50_P79058 Cluster: Uncharacterized protein C10F6.16; n=1; ...    36   0.86 
UniRef50_UPI00006CA83A Cluster: cation channel family protein; n...    34   2.6  
UniRef50_P07390 Cluster: COX3 mRNA-specific translational activa...    34   2.6  
UniRef50_Q2S4Y8 Cluster: Nucleoside-diphosphate-sugar epimerase;...    33   8.0  

>UniRef50_UPI00015B5B65 Cluster: PREDICTED: similar to
           alpha-endosulfine, putative; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to
           alpha-endosulfine, putative - Nasonia vitripennis
          Length = 111

 Score = 99.5 bits (237), Expect = 6e-20
 Identities = 55/87 (63%), Positives = 60/87 (68%)
 Frame = +3

Query: 258 FPNAMLGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGD 437
           FP A+ G+  SGHSAFLQKRLAKGQKFFDSGDYQMAKQ+                  TGD
Sbjct: 32  FP-AVGGKPISGHSAFLQKRLAKGQKFFDSGDYQMAKQKQA------AKPKPAGVLPTGD 84

Query: 438 AIPTPETVPLRKTSIIQPKYTTPSQTS 518
           AIPTPETVP RKTSIIQ K+ T + TS
Sbjct: 85  AIPTPETVPQRKTSIIQQKFNTSTSTS 111


>UniRef50_Q9VUB8 Cluster: CG6513-PA, isoform A; n=5;
           Endopterygota|Rep: CG6513-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 119

 Score = 94.3 bits (224), Expect = 2e-18
 Identities = 50/78 (64%), Positives = 54/78 (69%)
 Frame = +3

Query: 258 FPNAMLGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGD 437
           +P+ M  R P GHSAFLQKRL KGQKFFDSGDYQMAKQ+ G                TG+
Sbjct: 41  YPSGM--RVPGGHSAFLQKRLQKGQKFFDSGDYQMAKQKGGG-----VKQVFANKVTTGE 93

Query: 438 AIPTPETVPLRKTSIIQP 491
           AIPTPETVP RKTSIIQP
Sbjct: 94  AIPTPETVPARKTSIIQP 111


>UniRef50_O43768 Cluster: Alpha-endosulfine; n=59; Euteleostomi|Rep:
           Alpha-endosulfine - Homo sapiens (Human)
          Length = 121

 Score = 66.1 bits (154), Expect = 7e-10
 Identities = 36/74 (48%), Positives = 44/74 (59%)
 Frame = +3

Query: 273 LGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTP 452
           LG+ P G S FL KRL KGQK+FDSGDY MAK +  N               TGD IPTP
Sbjct: 44  LGQKPGG-SDFLMKRLQKGQKYFDSGDYNMAKAKMKN--KQLPSAGPDKNLVTGDHIPTP 100

Query: 453 ETVPLRKTSIIQPK 494
           + +P RK+S++  K
Sbjct: 101 QDLPQRKSSLVTSK 114


>UniRef50_P56211 Cluster: cAMP-regulated phosphoprotein 19; n=40;
           Tetrapoda|Rep: cAMP-regulated phosphoprotein 19 - Homo
           sapiens (Human)
          Length = 112

 Score = 65.7 bits (153), Expect = 9e-10
 Identities = 36/74 (48%), Positives = 44/74 (59%)
 Frame = +3

Query: 273 LGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTP 452
           LG+ P G S FL+KRL KGQK+FDSGDY MAK +  N               TGD IPTP
Sbjct: 39  LGQKPGG-SDFLRKRLQKGQKYFDSGDYNMAKAKMKN--KQLPTAAPDKTEVTGDHIPTP 95

Query: 453 ETVPLRKTSIIQPK 494
           + +P RK S++  K
Sbjct: 96  QDLPQRKPSLVASK 109


>UniRef50_A7SV53 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 115

 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 32/81 (39%), Positives = 40/81 (49%)
 Frame = +3

Query: 306 LQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTPETVPLRKTSII 485
           ++KRL KG K+FDSGDY MAK R  N                G  IPTP+ +P RKTS+ 
Sbjct: 34  MRKRLQKGVKYFDSGDYMMAKSRDKN----PRGPVNPAVLAVGKGIPTPDKIPHRKTSV- 88

Query: 486 QPKYTTPSQTS*PCITMNPHY 548
            P    P   + P     PH+
Sbjct: 89  -PMTEHPVTQTVPTHPHQPHH 108


>UniRef50_UPI00005879F2 Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 207

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = +3

Query: 276 GRGPSGHSAFLQKRLAKGQ-KFFDSGDYQMAKQRPGN----XXXXXXXXXXXXXXXTGDA 440
           G    G S FLQKRL K Q K+FDSGDY MAKQ+  +                   TG+A
Sbjct: 127 GLSKPGGSQFLQKRLNKNQMKYFDSGDYNMAKQQSKHKMRPLSGKPGGGIPPAPKPTGEA 186

Query: 441 IPTPETVPLRKTS 479
           IPTP+++  RK S
Sbjct: 187 IPTPDSIHHRKQS 199


>UniRef50_Q86EP6 Cluster: Clone ZZD1559 mRNA sequence; n=1;
           Schistosoma japonicum|Rep: Clone ZZD1559 mRNA sequence -
           Schistosoma japonicum (Blood fluke)
          Length = 138

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 297 SAFLQKRLAKGQKFFDSGDYQMAKQR---PGNXXXXXXXXXXXXXXXTGDAIPTPETVP- 464
           S  LQKRL +G K+FDSGDY MA+ +                     TG+ + TP++VP 
Sbjct: 38  SLLLQKRLNRGHKYFDSGDYNMARAKILQQQKHVLPPQTEEAILHESTGETMATPDSVPA 97

Query: 465 LRKTSIIQP 491
           +RK SI+ P
Sbjct: 98  VRKKSILSP 106


>UniRef50_Q5D9K4 Cluster: SJCHGC02194 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02194 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 134

 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 25/63 (39%), Positives = 32/63 (50%)
 Frame = +3

Query: 297 SAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPTPETVPLRKT 476
           S+ L +RL+K  K+FDSGDY MAK RP                 TGD IPT + + L + 
Sbjct: 32  SSLLHRRLSKNVKYFDSGDYNMAKSRP---VEKDSLPSANLDSPTGDTIPTVDNISLLRN 88

Query: 477 SII 485
             I
Sbjct: 89  KSI 91


>UniRef50_Q9XU56 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 174

 Score = 36.7 bits (81), Expect = 0.49
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +3

Query: 297 SAFLQKRLAKGQKFFDSGDYQMAKQRPG 380
           S+FLQK+L + +KFFDSGDY M K + G
Sbjct: 46  SSFLQKKLQQ-RKFFDSGDYAMDKSKAG 72


>UniRef50_P79058 Cluster: Uncharacterized protein C10F6.16; n=1;
           Schizosaccharomyces pombe|Rep: Uncharacterized protein
           C10F6.16 - Schizosaccharomyces pombe (Fission yeast)
          Length = 139

 Score = 35.9 bits (79), Expect = 0.86
 Identities = 26/85 (30%), Positives = 36/85 (42%)
 Frame = +3

Query: 270 MLGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPT 449
           + GR P      +QK L +G+K+FDSGDY + K    +                G  IP+
Sbjct: 40  LYGRLPQRKDLLVQK-LQQGRKYFDSGDYALNKAGKAS---------DSGITCIGKEIPS 89

Query: 450 PETVPLRKTSIIQPKYTTPSQTS*P 524
           P+T+P R  S   P       T  P
Sbjct: 90  PDTIPHRVVSAGSPNKEPSLHTKRP 114


>UniRef50_UPI00006CA83A Cluster: cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1071

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = +2

Query: 476 FHHSAKIHYTKSDILALYHYESTLQLQKVNIEEHIIKNIYSLFTYCNV 619
           F++  K   TKSD+ +L    +T QLQ +N + HI+KN+ + F+  N+
Sbjct: 255 FNNKMKSSITKSDVDSL----TTFQLQLLNDQSHIVKNLTNGFSQFNI 298


>UniRef50_P07390 Cluster: COX3 mRNA-specific translational activator
           PET494; n=3; Saccharomyces|Rep: COX3 mRNA-specific
           translational activator PET494 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 489

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 132 KNCYKTTCSSKLVENKGIPN*YRYSTI-EFLCSDFHDFSLDRL 7
           KN  K   S + V+N  +PN  +Y TI +F+C++ HD SL  L
Sbjct: 252 KNFDKIVTSPEKVQNFQLPNWSKYPTILKFICTELHDNSLKTL 294


>UniRef50_Q2S4Y8 Cluster: Nucleoside-diphosphate-sugar epimerase;
           n=1; Salinibacter ruber DSM 13855|Rep:
           Nucleoside-diphosphate-sugar epimerase - Salinibacter
           ruber (strain DSM 13855)
          Length = 331

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +3

Query: 432 GDAIPTPETVPLRKTSIIQPKYT 500
           G  IPTPE VPL  T I QP++T
Sbjct: 135 GAEIPTPEDVPLSITDITQPRFT 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,997,937
Number of Sequences: 1657284
Number of extensions: 9079664
Number of successful extensions: 17289
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17274
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)