Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1005
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    25   0.55 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   1.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   6.8  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    21   6.8  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 194 LVW*VTHVAFFMYLLTGLLTSKIATKPLV 108
           + W V H+   MY +T  L  K+ T PL+
Sbjct: 306 VAWIVLHLIRLMYQVTTNLVLKLLTSPLL 334


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 500 YTKSDILALYHYESTLQLQK 559
           +TK +I  L HY+ST  L K
Sbjct: 123 WTKIEINLLKHYQSTTDLHK 142


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 447 TPETVPLRKTSIIQPKYTTPS 509
           TP ++P ++TS   P Y++ S
Sbjct: 80  TPSSLPTQRTSTSNPTYSSRS 100


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 489 PKYTTPSQTS*PCITMNPHYNCKKL 563
           P Y+T S    P   M+P  NC  L
Sbjct: 302 PTYSTWSTVQTPTTVMSPTINCWSL 326


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 62  YRY*FGIPLFSTNFEEQV 115
           Y+Y FG+P +  +F ++V
Sbjct: 278 YQYPFGLPEYEYSFYQEV 295


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 437 CNPYS*NRTIKEDFHHSAKIHYTKSDIL 520
           C P S  RT   +F      HYT   +L
Sbjct: 6   CIPISSGRTNGSNFSKFINCHYTSGHLL 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,797
Number of Sequences: 336
Number of extensions: 2617
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)