Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1005
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    36   0.005
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   2.4  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    26   4.2  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   5.5  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   9.7  

>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 26/85 (30%), Positives = 36/85 (42%)
 Frame = +3

Query: 270 MLGRGPSGHSAFLQKRLAKGQKFFDSGDYQMAKQRPGNXXXXXXXXXXXXXXXTGDAIPT 449
           + GR P      +QK L +G+K+FDSGDY + K    +                G  IP+
Sbjct: 40  LYGRLPQRKDLLVQK-LQQGRKYFDSGDYALNKAGKAS---------DSGITCIGKEIPS 89

Query: 450 PETVPLRKTSIIQPKYTTPSQTS*P 524
           P+T+P R  S   P       T  P
Sbjct: 90  PDTIPHRVVSAGSPNKEPSLHTKRP 114


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 446 YS*NRTIKEDFHHSAKIHYTKSDILALYHYESTLQLQKVNIEEHII 583
           Y  N T K+   + A+I   K+ +   YH  S LQ   VN+   +I
Sbjct: 217 YPINSTQKQQAKYEAEIEGYKAKLAGTYHEISVLQNTIVNVSGQLI 262


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 560 VNIEEHIIKNIYSLFTYCN 616
           V+++E +  N+Y LFTY N
Sbjct: 80  VDLDEWVALNVYELFTYLN 98


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = +2

Query: 458 RTIKEDFHHSAKIHYTKSDILALYHYESTLQLQKVNIEEHIIKNIYSLFTYCNV 619
           R +KE   H  ++H    D   L+ +E    L  +   +H+  +I  +   C++
Sbjct: 610 RILKEYVEHQVEVHLVSLDPQVLHIFEKHGLLDLIGGYDHVQDSIKKVDALCDI 663


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 265 MRCWVEGPVVILHFCKKD*PRDKNSLILATIKW 363
           M+C  E P+  + +   + P + + L+L +I W
Sbjct: 40  MKCQCENPMAAITYADIEYPHNTHFLLLDSISW 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,603
Number of Sequences: 5004
Number of extensions: 41370
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)