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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1004
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WX42 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   289   6e-77
UniRef50_P18929 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   264   1e-69
UniRef50_P92111 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   220   2e-56
UniRef50_Q68RL2 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   204   2e-51
UniRef50_Q6JT33 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   200   2e-50
UniRef50_Q37546 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   199   4e-50
UniRef50_Q8HET7 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   198   1e-49
UniRef50_Q8HQJ2 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   194   2e-48
UniRef50_P03886 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   194   2e-48
UniRef50_Q8HQ04 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   189   6e-47
UniRef50_Q9MIZ0 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   189   6e-47
UniRef50_Q6JCT2 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   188   8e-47
UniRef50_Q68RK6 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   188   8e-47
UniRef50_Q0QJ87 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   187   3e-46
UniRef50_P48899 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   184   2e-45
UniRef50_P34847 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   182   7e-45
UniRef50_P48897 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   182   7e-45
UniRef50_Q766W0 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   182   9e-45
UniRef50_O99824 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   180   3e-44
UniRef50_Q96186 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   180   4e-44
UniRef50_Q4L1B9 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   179   5e-44
UniRef50_Q6E0W1 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   178   1e-43
UniRef50_Q94QP9 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   176   4e-43
UniRef50_P92558 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   175   8e-43
UniRef50_Q1W1N4 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   174   1e-42
UniRef50_Q00860 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   171   2e-41
UniRef50_Q8M6U9 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   164   2e-39
UniRef50_Q64LH8 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   163   3e-39
UniRef50_Q15K54 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   160   3e-38
UniRef50_Q06SB9 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   160   3e-38
UniRef50_Q37381 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   160   3e-38
UniRef50_Q3T4B4 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   158   1e-37
UniRef50_Q9B8G7 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   158   1e-37
UniRef50_A7KCS7 Cluster: NADH dehydrogenase subunit 1; n=4; Dika...   158   1e-37
UniRef50_Q85UH6 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   157   3e-37
UniRef50_Q2YA20 Cluster: NADH-quinone oxidoreductase subunit H 2...   155   1e-36
UniRef50_Q0H8X5 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   155   1e-36
UniRef50_Q8WF33 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   153   5e-36
UniRef50_P24875 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   151   2e-35
UniRef50_Q6EF18 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   150   4e-35
UniRef50_Q4W8E1 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   149   6e-35
UniRef50_P08774 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   149   6e-35
UniRef50_Q950Q6 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   148   1e-34
UniRef50_Q2HJL2 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   146   6e-34
UniRef50_P24887 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   146   6e-34
UniRef50_Q82TV0 Cluster: NADH-quinone oxidoreductase subunit H; ...   145   8e-34
UniRef50_Q68PI9 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   144   2e-33
UniRef50_Q2QAT5 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   143   3e-33
UniRef50_Q2RYV5 Cluster: NADH-quinone oxidoreductase subunit H; ...   143   3e-33
UniRef50_Q6VEI0 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   143   4e-33
UniRef50_Q9ZY22 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   141   1e-32
UniRef50_Q9T7K1 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   138   2e-31
UniRef50_Q9B8A1 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   137   2e-31
UniRef50_A5UVG2 Cluster: NADH dehydrogenase; n=5; Chloroflexi (c...   137   3e-31
UniRef50_Q00L96 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   137   3e-31
UniRef50_Q9T9H0 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   136   4e-31
UniRef50_Q6SL32 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   136   4e-31
UniRef50_Q3ZXR7 Cluster: NADH-quinone oxidoreductase subunit H; ...   136   6e-31
UniRef50_Q8F7Q5 Cluster: NADH-quinone oxidoreductase subunit H; ...   135   8e-31
UniRef50_Q1AVI7 Cluster: NADH-quinone oxidoreductase subunit H; ...   133   4e-30
UniRef50_A2D6E8 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   131   1e-29
UniRef50_Q5KUJ9 Cluster: NADH-quinone oxidoreductase subunit H; ...   130   3e-29
UniRef50_A3RE56 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   129   7e-29
UniRef50_A0LJM4 Cluster: NADH-quinone oxidoreductase subunit H 2...   128   9e-29
UniRef50_Q4FU58 Cluster: NADH-quinone oxidoreductase subunit H; ...   126   4e-28
UniRef50_P48901 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   126   5e-28
UniRef50_Q5W905 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   126   7e-28
UniRef50_Q7YH66 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   125   9e-28
UniRef50_Q9RU94 Cluster: NADH-quinone oxidoreductase subunit H; ...   125   9e-28
UniRef50_A0LRI8 Cluster: NADH-quinone oxidoreductase subunit H; ...   125   9e-28
UniRef50_UPI00015BD35D Cluster: UPI00015BD35D related cluster; n...   124   2e-27
UniRef50_Q9EV66 Cluster: NADH-quinone oxidoreductase subunit H 2...   124   3e-27
UniRef50_Q6TY88 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   122   8e-27
UniRef50_Q1IS58 Cluster: NADH-quinone oxidoreductase subunit H 1...   122   1e-26
UniRef50_Q81K04 Cluster: NADH-quinone oxidoreductase subunit H; ...   121   1e-26
UniRef50_Q5YWD4 Cluster: NADH-quinone oxidoreductase subunits H/...   121   2e-26
UniRef50_Q9T9L2 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   120   2e-26
UniRef50_A6H1Q6 Cluster: NADH-quinone oxidoreductase subunit H; ...   120   2e-26
UniRef50_Q0Z876 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   120   3e-26
UniRef50_Q1K3R5 Cluster: Respiratory-chain NADH dehydrogenase, s...   120   4e-26
UniRef50_Q1HBD8 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   120   4e-26
UniRef50_Q5DKX5 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   119   6e-26
UniRef50_O79868 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   119   8e-26
UniRef50_Q1IS40 Cluster: NADH-quinone oxidoreductase subunit H 2...   118   1e-25
UniRef50_A3THI6 Cluster: NADH dehydrogenase subunit H; n=2; cell...   117   2e-25
UniRef50_A4G637 Cluster: NADH-quinone oxidoreductase subunit H; ...   116   5e-25
UniRef50_A0RMD5 Cluster: NAD(P)H-quinone oxidoreductase chain 1 ...   116   7e-25
UniRef50_Q8KEB9 Cluster: NADH-quinone oxidoreductase subunit H; ...   115   9e-25
UniRef50_Q67KP0 Cluster: NADH-quinone oxidoreductase subunit H 2...   115   1e-24
UniRef50_O67336 Cluster: NADH-quinone oxidoreductase subunit H; ...   114   2e-24
UniRef50_P42032 Cluster: NADH-quinone oxidoreductase subunit H; ...   113   3e-24
UniRef50_Q8A0F7 Cluster: NADH-quinone oxidoreductase subunit H; ...   112   7e-24
UniRef50_P11658 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   112   7e-24
UniRef50_Q6N1Z4 Cluster: NADH-quinone oxidoreductase subunit H 2...   112   9e-24
UniRef50_Q2IL15 Cluster: NADH-quinone oxidoreductase subunit H; ...   109   5e-23
UniRef50_Q9A6Y1 Cluster: NADH-quinone oxidoreductase subunit H; ...   109   8e-23
UniRef50_Q02CT6 Cluster: NADH-quinone oxidoreductase subunit H 1...   109   8e-23
UniRef50_A3QRI2 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   108   1e-22
UniRef50_Q9B8Z5 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   108   1e-22
UniRef50_Q67P15 Cluster: NADH-quinone oxidoreductase subunit H 1...   108   1e-22
UniRef50_A4GJ19 Cluster: Putative respiratory-chain NADH dehydro...   106   4e-22
UniRef50_P05513 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   106   4e-22
UniRef50_A1Z3A0 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   105   1e-21
UniRef50_Q1HBB1 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   103   3e-21
UniRef50_Q8WAI8 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   103   4e-21
UniRef50_Q9B893 Cluster: NADH-ubiquinone oxidoreductase chain 1;...   101   2e-20
UniRef50_Q0LPS5 Cluster: Respiratory-chain NADH dehydrogenase, s...   100   7e-20
UniRef50_A7BBX4 Cluster: Putative uncharacterized protein; n=1; ...   100   7e-20
UniRef50_Q37165 Cluster: NAD(P)H-quinone oxidoreductase subunit ...   100   7e-20
UniRef50_Q8PU59 Cluster: F(420)H(2) oxidoreductase subunit H (F(...   100   7e-20
UniRef50_Q6XZ11 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    98   2e-19
UniRef50_Q6G395 Cluster: NADH-quinone oxidoreductase subunit H; ...    98   2e-19
UniRef50_Q5DNB6 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    97   3e-19
UniRef50_Q9PMA3 Cluster: NADH-quinone oxidoreductase subunit H; ...    96   6e-19
UniRef50_A6QCF5 Cluster: NADH-quinone oxidoreductase, chain H; n...    95   1e-18
UniRef50_A5UXK5 Cluster: NADH dehydrogenase; n=2; Roseiflexus|Re...    94   2e-18
UniRef50_Q11RU2 Cluster: NADH-quinone oxidoreductase subunit H 2...    94   2e-18
UniRef50_Q3E1S2 Cluster: Respiratory-chain NADH dehydrogenase, s...    94   3e-18
UniRef50_Q7YCX1 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    94   3e-18
UniRef50_A7CXQ4 Cluster: NADH dehydrogenase; n=1; Opitutaceae ba...    93   4e-18
UniRef50_Q9T6M0 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    93   4e-18
UniRef50_Q7YCU4 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    93   4e-18
UniRef50_Q979M4 Cluster: NADH dehydrogenase I chain E; n=4; Ther...    91   2e-17
UniRef50_Q8TQP1 Cluster: F(420)H(2) oxidoreductase subunit H (F(...    89   7e-17
UniRef50_Q6MGN3 Cluster: NADH-quinone oxidoreductase subunit H; ...    88   2e-16
UniRef50_Q6ANM8 Cluster: NADH-quinone oxidoreductase subunit H; ...    88   2e-16
UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain 4...    86   9e-16
UniRef50_A7KJL0 Cluster: NADH dehydrogenase subunit 1; n=12; Dys...    83   8e-15
UniRef50_A3ZL02 Cluster: NADH dehydrogenase I chain H; n=1; Blas...    78   2e-13
UniRef50_A1ALP6 Cluster: Respiratory-chain NADH dehydrogenase, s...    69   4e-13
UniRef50_Q6A6G5 Cluster: NADH-quinone oxidoreductase subunit H; ...    75   2e-12
UniRef50_A3E7R3 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    74   3e-12
UniRef50_Q70VA3 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    74   4e-12
UniRef50_Q9F2V9 Cluster: NADH dehydrogenase subunit NuoH2; n=5; ...    73   6e-12
UniRef50_Q5YBJ8 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    73   9e-12
UniRef50_A0RY69 Cluster: NADH-ubiquinone oxidoreductase, subunit...    73   9e-12
UniRef50_O79095 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    72   1e-11
UniRef50_Q6LE55 Cluster: NADH ubiquinone oxidoreductase subunit;...    70   5e-11
UniRef50_UPI00015BB094 Cluster: NADH dehydrogenase (quinone); n=...    69   8e-11
UniRef50_A3E7R8 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    69   1e-10
UniRef50_A1RZ42 Cluster: Respiratory-chain NADH dehydrogenase, s...    67   3e-10
UniRef50_A6Q8J6 Cluster: NADH-quinone oxidoreductase, chain H; n...    66   1e-09
UniRef50_Q09KP1 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    64   4e-09
UniRef50_A7CUF6 Cluster: NADH dehydrogenase; n=1; Opitutaceae ba...    63   7e-09
UniRef50_Q60IJ1 Cluster: Putative uncharacterized protein CBG249...    63   7e-09
UniRef50_O28444 Cluster: F420H2:quinone oxidoreductase, 41.2 kDa...    60   4e-08
UniRef50_Q9XMH4 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    60   6e-08
UniRef50_A7H9V7 Cluster: NADH dehydrogenase (Quinone) precursor;...    59   1e-07
UniRef50_A3MXU6 Cluster: Respiratory-chain NADH dehydrogenase, s...    58   1e-07
UniRef50_Q2WGD5 Cluster: NADH dehydrogenase subunit 1; n=1; Sela...    57   3e-07
UniRef50_Q34148 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    57   3e-07
UniRef50_P19040 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    57   3e-07
UniRef50_A1AUU5 Cluster: Respiratory-chain NADH dehydrogenase, s...    57   5e-07
UniRef50_A3H7X8 Cluster: Respiratory-chain NADH dehydrogenase, s...    56   6e-07
UniRef50_Q4Z0A0 Cluster: Putative uncharacterized protein; n=2; ...    55   1e-06
UniRef50_Q94YW8 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    54   3e-06
UniRef50_A1RZ51 Cluster: Respiratory-chain NADH dehydrogenase, s...    54   3e-06
UniRef50_A1RWL7 Cluster: Respiratory-chain NADH dehydrogenase, s...    54   4e-06
UniRef50_A3DJU0 Cluster: Respiratory-chain NADH dehydrogenase, s...    53   6e-06
UniRef50_Q5V276 Cluster: NADH dehydrogenase/oxidoreductase; n=4;...    53   6e-06
UniRef50_A7D3R6 Cluster: Respiratory-chain NADH dehydrogenase, s...    52   1e-05
UniRef50_A3DMA3 Cluster: Respiratory-chain NADH dehydrogenase, s...    52   1e-05
UniRef50_P08834 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    51   3e-05
UniRef50_Q980H2 Cluster: NADH dehydrogenase subunit H; n=4; Sulf...    50   4e-05
UniRef50_Q8PUL3 Cluster: Ech Hydrogenase, Subunit; n=3; Methanos...    50   7e-05
UniRef50_Q8ZWX0 Cluster: NADH-ubiquinone oxidoreductase subunit;...    48   2e-04
UniRef50_Q9YC30 Cluster: NuoH homolog; n=1; Aeropyrum pernix|Rep...    46   9e-04
UniRef50_Q8RDB7 Cluster: NADH:ubiquinone oxidoreductase subunit ...    44   0.003
UniRef50_A5FW44 Cluster: Formate hydrogenlyase subunit 4-like pr...    44   0.005
UniRef50_Q7GEL5 Cluster: NDH-A protein; n=7; Magnoliophyta|Rep: ...    44   0.005
UniRef50_A4XJP3 Cluster: Respiratory-chain NADH dehydrogenase, s...    43   0.008
UniRef50_P15576 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    43   0.008
UniRef50_Q7WT81 Cluster: EchB; n=3; Desulfovibrio|Rep: EchB - De...    41   0.024
UniRef50_P77937 Cluster: CooK; n=8; Bacteria|Rep: CooK - Rhodosp...    41   0.024
UniRef50_Q0W3I4 Cluster: Ech hydrogenase, subunit B; n=1; uncult...    40   0.056
UniRef50_Q3JDU8 Cluster: Respiratory-chain NADH dehydrogenase, s...    38   0.17 
UniRef50_Q0FXV6 Cluster: NuoH2 NADH chain H; n=1; Fulvimarina pe...    38   0.17 
UniRef50_A0UXN8 Cluster: Respiratory-chain NADH dehydrogenase, s...    38   0.17 
UniRef50_Q8TY38 Cluster: Membrane protein related to formate hyd...    38   0.17 
UniRef50_A6DB52 Cluster: HYDROGENASE-4 COMPONENT C; n=3; Epsilon...    38   0.23 
UniRef50_A3Q532 Cluster: Respiratory-chain NADH dehydrogenase, s...    38   0.30 
UniRef50_Q8THY9 Cluster: Hydrogenase-3 subunit; n=7; cellular or...    38   0.30 
UniRef50_Q57940 Cluster: Putative NADH-ubiquinone oxidoreductase...    38   0.30 
UniRef50_UPI00015BC866 Cluster: UPI00015BC866 related cluster; n...    37   0.40 
UniRef50_A5G4V9 Cluster: Respiratory-chain NADH dehydrogenase, s...    37   0.40 
UniRef50_Q1AZS1 Cluster: Respiratory-chain NADH dehydrogenase, s...    36   0.69 
UniRef50_A2BJ97 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    36   0.91 
UniRef50_Q37142 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    33   4.9  

>UniRef50_Q0WX42 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=44; Protostomia|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Apoda limacodes
          Length = 310

 Score =  289 bits (708), Expect = 6e-77
 Identities = 143/227 (62%), Positives = 160/227 (70%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTLLERKVLGYIQ+RKGPNK+G IG+LQPFSDAIKLFTKE+TYPNFSNY  YYFSPV 
Sbjct: 25  AFLTLLERKVLGYIQLRKGPNKLGIIGMLQPFSDAIKLFTKEQTYPNFSNYLSYYFSPVI 84

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F+        +PY +NL+ FNLG+LFF C TSLGVY+V+IAGWSSNSNYALLGGLR+VA
Sbjct: 85  SFMLSLMIWMLMPYYFNLLSFNLGMLFFFCCTSLGVYMVMIAGWSSNSNYALLGGLRAVA 144

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYEV                    F  YQ+                    AETNRTP
Sbjct: 145 QTISYEVSLALIMMSCIIFIMDFNLLKFMDYQKLCWFMFIMIPLGLCWLSSSMAETNRTP 204

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FDFAEGE ELVSGFNIEY  GGFALIFLAEYSSILF+ M  +++  G
Sbjct: 205 FDFAEGESELVSGFNIEYSSGGFALIFLAEYSSILFMSMFFILMYMG 251


>UniRef50_P18929 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1786; cellular organisms|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Drosophila melanogaster (Fruit
           fly)
          Length = 312

 Score =  264 bits (648), Expect = 1e-69
 Identities = 131/224 (58%), Positives = 148/224 (66%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTLLERKVLGYIQIRKGPNKVG +G+ QPF DAIKLFTKE+TYP  SNY  YY SP+F
Sbjct: 22  AFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLSNYLSYYISPIF 81

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                      +P+   L  FNLG LFFLC TSLGVY V++AGWSSNSNYALLGGLR+VA
Sbjct: 82  SLFLSLFVWMCMPFFVKLYSFNLGGLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVA 141

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYEV                   +F+ YQ                     AETNR P
Sbjct: 142 QTISYEVSLALILLSFIFLIGSYNMIYFFFYQVYMWFLIILFPMALVWVSISLAETNRNP 201

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           FDFAEGE ELVSGFN+EY  GG ALIF+AEY+SILF+ M+  +I
Sbjct: 202 FDFAEGESELVSGFNVEYSSGGLALIFMAEYASILFMSMLFCVI 245


>UniRef50_P92111 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=40; Deltocephalinae|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Flexamia delongi
          Length = 310

 Score =  220 bits (538), Expect = 2e-56
 Identities = 112/226 (49%), Positives = 137/226 (60%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F TLLERKVL YIQ RKGPNK+G +GLLQPFSD +KLF KE+ +P  SN   Y   PVF 
Sbjct: 19  FFTLLERKVLSYIQCRKGPNKLGVLGLLQPFSDGMKLFMKEQFFPMNSNSMIYMVCPVFS 78

Query: 184 FIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQ 363
            I         PY  N +   LG LFFLC +SLG+Y ++I GWSSNS Y++LG +RS++Q
Sbjct: 79  MIQSLFIWVIFPYYVNCLEMGLGFLFFLCCSSLGIYGLMICGWSSNSVYSMLGCIRSISQ 138

Query: 364 TISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPF 543
            ISYEV                    +Y +Q                     AE+NRTPF
Sbjct: 139 AISYEVSLSLILLCFFLLVDSYSFISYYNFQFSLWLIMLSLPIFFRWLSCCMAESNRTPF 198

Query: 544 DFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           DF+EGE ELVSGFN+EY  GGFAL+F++EYSSI+FI MI  +I  G
Sbjct: 199 DFSEGESELVSGFNVEYGGGGFALLFISEYSSIIFISMITCVIFLG 244


>UniRef50_Q68RL2 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=8; Arthropoda|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Glycaspis brimblecombei
          Length = 306

 Score =  204 bits (497), Expect = 2e-51
 Identities = 104/223 (46%), Positives = 131/223 (58%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTLLERK+LGY+Q+RKGP+ VG  G+ QPFSDA+KLF+KE       N+F ++ SPVF
Sbjct: 20  AFLTLLERKLLGYVQLRKGPDSVGLWGVFQPFSDALKLFSKEYIIVQKINFFPFWLSPVF 79

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       PY Y L  + L +LF  C+ SL VY ++I+GWSSNS+YA LG +RSVA
Sbjct: 80  SLFVSLAVWFTFPYFYILCSWKLSVLFMFCVLSLNVYSIMISGWSSNSSYATLGCIRSVA 139

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q++SYEV                    F+  QE                    AE NRTP
Sbjct: 140 QSVSYEVSFFIMILTVIFFVGSFNLLEFFKTQEYSWIGCFTVPMFFMMFVSMLAELNRTP 199

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVI 669
           FDF+EGE ELVSGFNIEY    FA +FL+EY SI+F   +L +
Sbjct: 200 FDFSEGESELVSGFNIEYGGTSFAFLFLSEYLSIIFSSFLLTL 242


>UniRef50_Q6JT33 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=12; Araneae|Rep: NADH-ubiquinone oxidoreductase chain
           1 - Heptathela hangzhouensis
          Length = 304

 Score =  200 bits (489), Expect = 2e-50
 Identities = 101/227 (44%), Positives = 129/227 (56%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TL+ERKVLGYIQ RKGPNKVG +G+ QPFSDA+KLF KE  +   SN   +Y  PV 
Sbjct: 16  AFFTLMERKVLGYIQCRKGPNKVGVLGIFQPFSDAVKLFGKEFYFLETSNMIYFYLGPVL 75

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                      +PY   ++    GILFF   + +G++ +++ GW SNS ++LLG  R VA
Sbjct: 76  MIPLSLLLWILLPYSDGVLDLKYGILFFFICSGMGIFSLMLVGWGSNSKFSLLGSYRGVA 135

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                      +YQE                    AE NRTP
Sbjct: 136 QMISYEVSFMFIILGLLMISNSYLLIDILIYQEILWFFLGNLILLTMWLIVCMAELNRTP 195

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FDFAEGE ELVSGFN+E+  GGFA+IF++EYSSI+ I    +I+ +G
Sbjct: 196 FDFAEGESELVSGFNVEFMGGGFAIIFMSEYSSIMMISTFSIIMFFG 242


>UniRef50_Q37546 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=112; Protostomia|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Lumbricus terrestris (Common earthworm)
          Length = 308

 Score =  199 bits (486), Expect = 4e-50
 Identities = 104/224 (46%), Positives = 128/224 (57%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TL+ERK LGY  +RKGPNKVG +GL QPF+DAIKLF KE+  PN SN   + F+P  
Sbjct: 21  AFYTLMERKFLGYFHLRKGPNKVGLMGLPQPFADAIKLFVKEQAKPNPSNQTPFLFAPTM 80

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             +         P+ +        +L+FLC++S+ VY   +AGWSSNS YALLG LR VA
Sbjct: 81  GLVLALLMWVIYPHSHQSFFIQFSVLYFLCVSSMNVYTTFLAGWSSNSKYALLGALRGVA 140

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYEV                     + Y                      AETNRTP
Sbjct: 141 QTISYEVSMSLILLSSLIILSTMDFTKMFSYS---WILFMFIPLAVVWFITNLAETNRTP 197

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           FDFAEGE ELVSGFN+EY  G FALIF+AEY++IL + +   +I
Sbjct: 198 FDFAEGESELVSGFNVEYSAGLFALIFMAEYANILIMSLFTSVI 241


>UniRef50_Q8HET7 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=24; Formica|Rep: NADH-ubiquinone oxidoreductase chain
           1 - Formica truncorum
          Length = 293

 Score =  198 bits (482), Expect = 1e-49
 Identities = 104/224 (46%), Positives = 125/224 (55%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTLLERK+LGY+Q+RKGPNKV  IG+ QPFSDAIKLF KE  Y   SNY  +Y  PV 
Sbjct: 2   AFLTLLERKILGYVQMRKGPNKVMIIGMFQPFSDAIKLFNKELFYVYKSNYNLFYLCPVL 61

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F          PYI N+   N  +L  + L S+  Y +I  GWSSNS Y+++G +RSV+
Sbjct: 62  MFSVMLMSWMLFPYITNIYFLNYSMLLLILLMSISGYTMIFMGWSSNSIYSMMGSMRSVS 121

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q +SYEV                    F  YQ                     AE NR+P
Sbjct: 122 QMLSYEVSFIFIIFILMIMSESYSFLDFMNYQIYVWYLFIFYPLFLMYFISVLAELNRSP 181

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
            DF EGE ELVSGFNIEY  GGF LIFLAEY  I+F   + V++
Sbjct: 182 MDFIEGESELVSGFNIEYFSGGFTLIFLAEYGMIIFFSFLSVLL 225


>UniRef50_Q8HQJ2 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=7; Chelicerata|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Ornithodoros moubata (Soft tick)
          Length = 324

 Score =  194 bits (472), Expect = 2e-48
 Identities = 97/227 (42%), Positives = 128/227 (56%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERKVLGYI +RKGPN VG IG+ QPF+DA+KLF KE  +  F N + Y +  V 
Sbjct: 17  AFFTLLERKVLGYIHLRKGPNSVGIIGMFQPFADAVKLFCKEMNFMKFMNIYMYMWISVI 76

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             I          +  N +    G+++FLC++SLGVY+++  GW+SNS Y LLG  R +A
Sbjct: 77  SLILMMMGWILYYWGKNQVEIEYGLIYFLCVSSLGVYVILGGGWASNSKYGLLGSFRGLA 136

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                       +QE                    AE NR+P
Sbjct: 137 QVISYEVGMSFVLMGIIYFSGSYNIMVVSEFQEKFWMVWGMTGLFFLWMISSFAEVNRSP 196

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD  EGE ELVSGFN+EY   GFAL+F++EY +I+F+ M+  I+ +G
Sbjct: 197 FDLCEGESELVSGFNVEYGSYGFALLFISEYGNIIFMSMLSCIMFFG 243


>UniRef50_P03886 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=3058; root|Rep: NADH-ubiquinone oxidoreductase chain 1
           - Homo sapiens (Human)
          Length = 318

 Score =  194 bits (472), Expect = 2e-48
 Identities = 105/227 (46%), Positives = 127/227 (55%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFL L ERK+LGY+Q+RKGPN VG  GLLQPF+DA+KLFTKE   P  S    Y  +P  
Sbjct: 18  AFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTKEPLKPATSTITLYITAPTL 77

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                      +P    L+  NLG+LF L  +SL VY ++ +GW+SNSNYAL+G LR+VA
Sbjct: 78  ALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVA 137

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYEV                        QE                    AETNRTP
Sbjct: 138 QTISYEVTLAIILLSTLLMSGSFNLSTLITTQEHLWLLLPSWPLAMMWFISTLAETNRTP 197

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD AEGE ELVSGFNIEY  G FAL F+AEY++I+ +  +   I  G
Sbjct: 198 FDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLG 244


>UniRef50_Q8HQ04 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=7; Arthropoda|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Thrips imaginis (Plague thrips)
          Length = 306

 Score =  189 bits (460), Expect = 6e-47
 Identities = 97/220 (44%), Positives = 127/220 (57%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+TL+ERK+LGY+QIR GPNKVG  G+LQP +DA+KL++KE  +P  SN   ++ SP  
Sbjct: 21  AFITLMERKILGYMQIRMGPNKVGLTGILQPMADAVKLYSKEINWPTQSNSMPFFISPCL 80

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                      +PY+   I   L +L FL +  LGVY ++I+GWSSNSNY+L+G +R++A
Sbjct: 81  SLTLALTLCLIMPYLKPWINMKLSLLMFLAILGLGVYPILISGWSSNSNYSLIGSMRALA 140

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYEV                  Y     Q+                    AE NRTP
Sbjct: 141 QTISYEVSLVFILLSSLFISSSLSFYSLVETQK-LFYFFLFIVPFYMWLFSTVAELNRTP 199

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
           FDFAEGE ELVSGFN E+    FA+IF+AEY  IL   ++
Sbjct: 200 FDFAEGESELVSGFNTEFSSSPFAIIFMAEYLMILIFSLL 239


>UniRef50_Q9MIZ0 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=284; Coelomata|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 324

 Score =  189 bits (460), Expect = 6e-47
 Identities = 101/227 (44%), Positives = 129/227 (56%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTL+ERKVLGY+Q+RKGPN +G  GLLQ  +D +KLF KE   P+ ++   +  +PV 
Sbjct: 24  AFLTLVERKVLGYMQLRKGPNVMGPRGLLQSVADGVKLFIKEPIRPSMASPILFLTAPVL 83

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             I        +P  Y ++  NLGILF + ++SL VY ++ +GW+SNS YAL+G LR+VA
Sbjct: 84  ALILAMMLWAPMPMPYPVLDLNLGILFIMAISSLAVYSILGSGWASNSKYALIGALRAVA 143

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYEV                    F   QE                    AETNR P
Sbjct: 144 QTISYEVSLGLILLSAVIFSGGYTLQTFNTTQEDTWLLLPLWPLAIMWFISTLAETNRAP 203

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD  EGE ELVSGFN+EY  G FAL FLAEYS+IL +     ++  G
Sbjct: 204 FDLTEGESELVSGFNVEYAAGPFALFFLAEYSNILLMNTHSTVLFLG 250


>UniRef50_Q6JCT2 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=14; Aleyrodidae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Aleurodicus dispersus
          Length = 318

 Score =  188 bits (459), Expect = 8e-47
 Identities = 95/220 (43%), Positives = 125/220 (56%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TL+ERK+L Y+Q RKGPNK   +G+LQPFSDAIKLF+KE      SNY  YY  P+ 
Sbjct: 19  AFFTLMERKILSYMQNRKGPNKTLIMGILQPFSDAIKLFSKEMNLNFKSNYIIYYMFPLL 78

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             I         P+ +N       IL  + + S+ + I+++  WSSNSNYA++G +RS+A
Sbjct: 79  NIICSLMMWMIYPFYWNFNFNKFNILMLMSMMSINMIIIMLISWSSNSNYAMIGLMRSIA 138

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYE+                   + ++ Q+                    AETNRTP
Sbjct: 139 QMISYEINLMIIIMTIVNLTEQLNFNYMFIMQKYMMFYLYLMFLFYIWIITILAETNRTP 198

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
           FDF+EGE EL+SGFNIEY    FA IFLAEYS+IL + +I
Sbjct: 199 FDFSEGESELISGFNIEYSSFSFAFIFLAEYSNILIMSLI 238


>UniRef50_Q68RK6 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=51; Bilateria|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Diuraphis noxia (Russian wheat aphid)
          Length = 315

 Score =  188 bits (459), Expect = 8e-47
 Identities = 97/227 (42%), Positives = 126/227 (55%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERKVLGYIQ+RKGPNK    G LQP  D +KLF KE  YP+  N+F +  SP+ 
Sbjct: 26  AFFTLLERKVLGYIQLRKGPNKFFLKGALQPMGDGLKLFFKEVNYPSNMNFFIFMISPML 85

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             +         PYI        G+++  C +SL VYI ++  WSSNSNY++LG +R ++
Sbjct: 86  GLLISIFFWFIYPYIGMNYIMGFGLIYMFCCSSLMVYIFLMVSWSSNSNYSVLGMIRFIS 145

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                    FY+YQ                     AE NR+P
Sbjct: 146 QMISYEVSMMIIIMNLMFLINSFNLNDFYIYQMNSKFFFFLFLIFILLLISFMAEMNRSP 205

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FDF+EGE ELVSGFNIE+    F  IF++EY SI+F+ M+L  + +G
Sbjct: 206 FDFSEGESELVSGFNIEFSSMSFIFIFMSEYMSIMFMGMLLCEMFFG 252


>UniRef50_Q0QJ87 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Xenos vesparum|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Xenos vesparum
          Length = 318

 Score =  187 bits (455), Expect = 3e-46
 Identities = 101/223 (45%), Positives = 123/223 (55%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+ L ERK+LGYI IRK  NKVGFIGL+QP  D IKL  KE +    SN   +  +P+ 
Sbjct: 30  AFIVLYERKILGYIHIRKSVNKVGFIGLIQPLGDGIKLLFKESSLLEKSNILLFLMAPLM 89

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F         +PY  N+  FNL ILFFL L S+ V  +I+ GWSSNS+Y+ L  LR V 
Sbjct: 90  NFFLVMLMYMVLPYSGNMDWFNLSILFFLVLLSMNVLSIILIGWSSNSSYSFLSALRMVV 149

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYE+                      + Q+                    AE+NR P
Sbjct: 150 QMISYEISLMFLLLSIMVSVESFSVLNLEMVQKYLWLVSCYMLLSVMIFVIFLAESNRVP 209

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVI 669
           FDF EGE ELVSGFNIEY  G FALIF+AEY SILF+  ++VI
Sbjct: 210 FDFIEGESELVSGFNIEYGSGYFALIFVAEYLSILFMCYMMVI 252


>UniRef50_P48899 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=144; Eukaryota|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Cyanidium caldarium
          Length = 344

 Score =  184 bits (448), Expect = 2e-45
 Identities = 97/226 (42%), Positives = 127/226 (56%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+LTL+ERK++G IQ RKGPN VG  GLLQP +D +KL  KE + PN +N F +  +P+ 
Sbjct: 39  AYLTLIERKIIGSIQKRKGPNIVGIFGLLQPIADGLKLLLKETSLPNSANIFIFIIAPIL 98

Query: 181 RFIXXXXXXXXIPY--IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
            F         +P+  I      N+GIL+ L ++SLGVY +II+GW+SNS YA LGGLRS
Sbjct: 99  TFFLALCAWAIMPFNEINFYSNLNIGILYLLAISSLGVYGIIISGWASNSKYAFLGGLRS 158

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
            AQ ISYEV                      L Q+                    AETNR
Sbjct: 159 AAQIISYEVSIGLIIINVLLCSGTLNLKEIVLAQQNIWYIFPLFPLFLMFFISSLAETNR 218

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           +PFD  E E ELV+G+N+EY   GFAL FL EY++I+ I  +  I+
Sbjct: 219 SPFDLPEAEAELVAGYNVEYSAMGFALFFLGEYTNIILISAVSTIL 264


>UniRef50_P34847 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=5; Endopterygota|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Apis mellifera ligustica (Common honeybee)
          Length = 305

 Score =  182 bits (443), Expect = 7e-45
 Identities = 97/227 (42%), Positives = 123/227 (54%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTLLERK+LGYIQ RKGPNK+   G+ QPFSDA+KL +KE  + N+SN F Y  SP+ 
Sbjct: 19  AFLTLLERKILGYIQDRKGPNKIMLFGMFQPFSDALKLLSKEWFFFNYSNLFIY--SPML 76

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F          P+   +      ILF L +  L VY V+  GW SN NYA+LG +R V+
Sbjct: 77  MFFLSLVMWILYPWFGFMYYIEFSILFMLLVLGLSVYPVLFVGWISNCNYAILGSMRLVS 136

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
             IS+E+                    F+ +Q                      E NRTP
Sbjct: 137 TMISFEINLFFLVFSLMMMVESFSFNEFFFFQNNIKFAILLYPLYLMMFTSMLIELNRTP 196

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD  EGE ELVSGFNIEY    F LIFL+EY +I+F+ +IL ++ YG
Sbjct: 197 FDLIEGESELVSGFNIEYHSSMFVLIFLSEYMNIMFMSVILSLMFYG 243


>UniRef50_P48897 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=20; Sigmurethra|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Albinaria coerulea (Land snail)
          Length = 299

 Score =  182 bits (443), Expect = 7e-45
 Identities = 102/223 (45%), Positives = 125/223 (56%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERKVL  +QIRKGPNKVG  G++QP +DA+KLF KE   P  SN F +   P+ 
Sbjct: 18  AFYTLLERKVLSSMQIRKGPNKVGLYGIIQPIADALKLFLKEFFIPVNSNSFMFMILPLL 77

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       P ++     +  ++ F+ LT   VY++I AGWSSNS Y+ LGG+R+ A
Sbjct: 78  GLTLSLMLWAVFPSMWMFNFHSYLLMLFVALTGTFVYVIIFAGWSSNSKYSFLGGMRAAA 137

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYEV                  Y +Y                        AETNR P
Sbjct: 138 QTISYEV---SMLLLLFFAVLMYRTYSWYEAGLSSPIGIIIFIIMFIWFASCLAETNRAP 194

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVI 669
           FDFAEGE ELVSGFNIEY  G FAL+FLAEYSSILF+ M+  +
Sbjct: 195 FDFAEGESELVSGFNIEYYGGMFALLFLAEYSSILFMCMMSTV 237


>UniRef50_Q766W0 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=3; Crustacea|Rep: NADH-ubiquinone oxidoreductase chain
           1 - Vargula hilgendorfii (Sea firefly) (Cypridina
           hilgendorfii)
          Length = 318

 Score =  182 bits (442), Expect = 9e-45
 Identities = 97/227 (42%), Positives = 126/227 (55%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK+LGY  +RKGPNKVG+IG+LQPF+DA+KLFTKE   P  S+   Y  SPV 
Sbjct: 33  AFFTLLERKILGYAGMRKGPNKVGYIGILQPFADAVKLFTKEDVVPMKSSVMLYMISPVL 92

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       PY +  + F+ G L+  C   +GVY + ++GWSSNS YA++G LR+VA
Sbjct: 93  ALFMPLCMWCVFPYWFVGVEFSWGWLYVFCGLGMGVYSLFLSGWSSNSKYAVMGSLRAVA 152

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                  Y   L+                       E+ R+P
Sbjct: 153 QMISYEV---VLAMVVMLFVFFLGSYDMGLWGYTSLLGVGLLPLLWIWMTVMLGESQRSP 209

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD AEGE ELVSGFN EY   GFAL+F+ EY ++L + M+  ++  G
Sbjct: 210 FDLAEGESELVSGFNTEYSGVGFALLFMGEYGAMLLMSMLSSVLFLG 256


>UniRef50_O99824 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=17; Bilateria|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Rhipicephalus sanguineus (Brown dog tick)
          Length = 313

 Score =  180 bits (438), Expect = 3e-44
 Identities = 95/227 (41%), Positives = 119/227 (52%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TL+ERK LGY  IRKGPNK G +GLLQP SDA+KLF+KE     + N F    SP+ 
Sbjct: 20  AFFTLMERKFLGYCHIRKGPNKTGAMGLLQPISDALKLFSKEMNKMFYMNKFIQIISPLI 79

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             +          +  N +  N+ I+FFLC++SL  Y ++ +GWSSNS Y+L+G  R  A
Sbjct: 80  MILMMMMMWMIFYFSNNALNLNMSIIFFLCISSLASYAILFSGWSSNSKYSLIGSYRGFA 139

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                    F   QE                    AE NR P
Sbjct: 140 QVISYEVSMAMILISLAIIPQSYNFISFLKIQETFPLIFSFLPIFIIWIITVLAELNRVP 199

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD AEGE ELVSGFNIEY    FA+IF++EY  I+ I  +   +  G
Sbjct: 200 FDLAEGESELVSGFNIEYGSWLFAIIFMSEYGDIMMISFLTYYLFLG 246


>UniRef50_Q96186 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=4; Pectinidae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Pecten maximus (King scallop) (Pilgrim's clam)
          Length = 354

 Score =  180 bits (437), Expect = 4e-44
 Identities = 96/228 (42%), Positives = 128/228 (56%), Gaps = 1/228 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+LTL ERKVL   Q+RKGP  VG++G++QPF+D IKLF+KE   P+ SN   ++  P F
Sbjct: 58  AYLTLFERKVLAASQVRKGPEMVGWLGIMQPFADGIKLFSKEYFTPSNSNPALFFLGPCF 117

Query: 181 RFIXXXXXXXXIPYIYNL-ICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
             +         P I+   + F  G L+ L + S+GVY V++ GWSSNS YA+ G +R++
Sbjct: 118 MLLHSFILWGCSPGIWGCGVYFFWGGLYVLSVLSVGVYGVVLCGWSSNSRYAMFGAVRAL 177

Query: 358 AQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRT 537
           AQ ISYEV                      L Q                     AE+NR 
Sbjct: 178 AQVISYEVMLVFLYLCPFFVVGSLDLESVSLSQVSGCNGGVLFLVLPWWVFCVLAESNRA 237

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           PFDF EGE ELVSGFN+EY  GGFA+IF+AEYS+ILF+  +  ++  G
Sbjct: 238 PFDFVEGESELVSGFNVEYGSGGFAMIFIAEYSNILFLSTLTSVLFLG 285


>UniRef50_Q4L1B9 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Lepeophtheirus salmonis|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Lepeophtheirus salmonis (salmon
           louse)
          Length = 295

 Score =  179 bits (436), Expect = 5e-44
 Identities = 98/217 (45%), Positives = 122/217 (56%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+TLLERK++GY Q RKGPNKV F+G+LQPFSDAIKLF KE    +F NY  Y+ SPV 
Sbjct: 11  AFITLLERKIIGYSQARKGPNKVSFLGILQPFSDAIKLFVKEVGSFSFVNYSVYWISPVV 70

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       P   +   +++  L  L   S+ VY + ++GWSSN  Y+ +GG+R VA
Sbjct: 71  GLSVALLIWNVYPLEMSFGSWSISWLGLLAGMSVSVYPLFLSGWSSNCVYSHIGGVRGVA 130

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                      L+ E                    AETNRTP
Sbjct: 131 QVISYEVVFTILVFSLMSLSGSLTLVGSMLFSEYFYVYMLSPLLVYLWFLTGLAETNRTP 190

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFI 651
           FDF+EGE ELVSGFN EY   GFALIF+A+Y+SIL +
Sbjct: 191 FDFSEGESELVSGFNTEYGGSGFALIFMAQYASILLL 227


>UniRef50_Q6E0W1 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Paraspadella gotoi|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Paraspadella gotoi
          Length = 297

 Score =  178 bits (433), Expect = 1e-43
 Identities = 96/224 (42%), Positives = 124/224 (55%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TL+ERK+L  IQ+R GPNK  ++GLL PF+DA+KL TKE   P  SN   Y   P+F
Sbjct: 25  AFFTLMERKILSLIQLRVGPNKPSYMGLLVPFADALKLITKENNIPQGSNKLLYLLLPLF 84

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             +         P   + +    G+LFFLCL+SLGVY ++  GWSSNS Y+L+G +RSVA
Sbjct: 85  TLMIPLNMWVLNPSNMSSLTTKSGLLFFLCLSSLGVYAIMFLGWSSNSKYSLMGAIRSVA 144

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYEV                    + L                       AE+NR P
Sbjct: 145 QTISYEVTMAIIIIHHVIIN------MYMLKNLGVTPTNFFIIIMVMMMISMLAESNRAP 198

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           FDFAEGE ELVSGFN E+    F LIFLAEY+ + F+ ++  ++
Sbjct: 199 FDFAEGESELVSGFNTEFSSIPFVLIFLAEYTMMFFMSLLCSLL 242


>UniRef50_Q94QP9 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Inversidens japanensis|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Inversidens japanensis
          Length = 292

 Score =  176 bits (429), Expect = 4e-43
 Identities = 91/224 (40%), Positives = 126/224 (56%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTLLERK LGY+Q+RKGPNK+G  GL QP +DA+KL TK  + P   N      +P+ 
Sbjct: 13  AFLTLLERKSLGYMQLRKGPNKLGLTGLPQPLADAMKLLTKTTSTPTICNPIAMSVAPLL 72

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       P  +++   +LG+L F+C+++  VY +++ GWS+NS +ALLG +R++A
Sbjct: 73  ALALSALLWHLYPTTHSVSHKSLGLLLFICISATAVYSIMVGGWSTNSKFALLGAMRAMA 132

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYE+                    F                         AETNR P
Sbjct: 133 QTISYEIPMILTLIFYGLISNTLDLSAFCENLSLKFKGLLIIPMTLVWLTIMLAETNRAP 192

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           FDFAEGE ELVSGFN+EY    FA++F+AEY +ILF+ ++  I+
Sbjct: 193 FDFAEGESELVSGFNVEYSGTKFAMLFMAEYLNILFMGLLSSIL 236


>UniRef50_P92558 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=365; Eukaryota|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 325

 Score =  175 bits (426), Expect = 8e-43
 Identities = 90/229 (39%), Positives = 125/229 (54%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFL L ERKV+ ++Q RKGP+ VG  GLLQP +D +KL  KE   P+ +N+F +  +PV 
Sbjct: 21  AFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVA 80

Query: 181 RFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
            F+        +P+ Y ++    N+G+L+   ++SLGVY +IIAGWSSNS YA LG LRS
Sbjct: 81  TFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRS 140

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
            AQ +SYEV                      + Q+                    AETNR
Sbjct: 141 AAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNR 200

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            PFD  E E ELV+G+N+EY   GFAL FL EY++++ +  +  +   G
Sbjct: 201 APFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTLFFLG 249


>UniRef50_Q1W1N4 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=675; Arachnida|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Pardosa hyperborea
          Length = 306

 Score =  174 bits (424), Expect = 1e-42
 Identities = 99/221 (44%), Positives = 119/221 (53%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK+L YIQIRKGPNKVG +G+LQPFSDAIKLF K        N+   + +P  
Sbjct: 19  AFYTLLERKILSYIQIRKGPNKVGMMGILQPFSDAIKLFNKNLLPLESMNFTLSFMTPFM 78

Query: 181 RFIXXXXXXXXIPY-IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
                      + Y    LI     +L F  L+S+ VY +++ GWS+NS Y  LG +RSV
Sbjct: 79  SLFISLCMISILMYNDSTLIDIKHSLLMFFILSSMSVYFILLIGWSTNSKYCHLGSIRSV 138

Query: 358 AQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRT 537
           AQ ISYEV                        Q                     AETNR+
Sbjct: 139 AQMISYEVPFFMMILFLVLLSQSYSFTQMEETQYLLYYFWGNMLLFMMWLSSCLAETNRS 198

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
           PFDFAEGE ELVSGFN+EY  G FALIFL+EY S+L + MI
Sbjct: 199 PFDFAEGESELVSGFNVEYMGGLFALIFLSEYLSMLILSMI 239


>UniRef50_Q00860 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=6; Mytilus|Rep: NADH-ubiquinone oxidoreductase chain 1
           - Mytilus edulis (Blue mussel)
          Length = 305

 Score =  171 bits (415), Expect = 2e-41
 Identities = 90/227 (39%), Positives = 127/227 (55%), Gaps = 1/227 (0%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F TLLERK+L  I IRKGP+KV ++G+LQPFSDA KL  KE   P  +N   +  +P   
Sbjct: 22  FYTLLERKILAIIMIRKGPSKVSYMGILQPFSDAGKLLCKEFIVPTRANVGPFILAPALM 81

Query: 184 FIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQ 363
                      PY    + +  G++ F+ +TS+ VY V+++GW+SNS Y+LLG +R++AQ
Sbjct: 82  LAISLLGWLLYPYKSAEVFYVFGVILFMVITSVSVYGVMMSGWASNSKYSLLGAVRAMAQ 141

Query: 364 TISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-XXXXXXXXXXXXXXXXXXXXAETNRTP 540
           +ISYE+                      ++Q+                     AETNR P
Sbjct: 142 SISYEIPMGFIFFCVVLCSGVFMFQEISVFQQSLFFFFLPLCVVMLVWMLCMLAETNRAP 201

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FDF EGE ELVSG+N+EY  GGFA++F+AEYSSIL   ++   + +G
Sbjct: 202 FDFVEGESELVSGYNVEYSGGGFAVMFIAEYSSILLSSVMSAAMFFG 248


>UniRef50_Q8M6U9 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=15; Bilateria|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Tigriopus japonicus
          Length = 306

 Score =  164 bits (399), Expect = 2e-39
 Identities = 89/220 (40%), Positives = 119/220 (54%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+TL ERK+LG  Q+RKGPNKV   G+LQP +DA+KLF KE   P  SN+F +  +P  
Sbjct: 20  AFVTLFERKILGCAQLRKGPNKVSLGGVLQPLADAVKLFFKETVVPCESNFFMFISAPAS 79

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F+        +    +       ++F LC+  +GVY + IAGWSSNS YAL+G LR +A
Sbjct: 80  GFMVFSLCSSALHASSDSGYVEYVMVFVLCVLGMGVYPLFIAGWSSNSKYALIGSLRGIA 139

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q+ISYE+                       +                      AE+NRTP
Sbjct: 140 QSISYEISLSLIVLSMMLLWQSFSIESAADFLPSPGLTVFLFPLLSLWLISCLAESNRTP 199

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
           FDFAEGE ELVSGFN+E+    F L+F++EY  ILF  ++
Sbjct: 200 FDFAEGESELVSGFNVEFGGIFFVLMFMSEYGMILFFSLL 239


>UniRef50_Q64LH8 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Paratomella rubra|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Paratomella rubra
          Length = 313

 Score =  163 bits (397), Expect = 3e-39
 Identities = 93/217 (42%), Positives = 113/217 (52%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK+L Y Q+RKGPN VG  G LQP +D +KLF KE   P  S  F YY SP+F
Sbjct: 24  AFFTLLERKLLSYSQLRKGPNVVGS-GFLQPIADGLKLFIKEVVVPLSSQNFLYYLSPLF 82

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F           +      +N    FFL ++S  V+  + +GWSSNS +A+LG +R+ A
Sbjct: 83  VFFLSLFLWSIFFFSKLFFVYN-SFFFFLSVSSXSVFFFLSSGWSSNSFFAILGSIRAAA 141

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                  YF   +                      AETNR+P
Sbjct: 142 QMISYEVVMSFILVFFFLLXKTNSFYFIMDFSLYFENLLFFFFFFFFWMVVILAETNRSP 201

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFI 651
           FD  EGE ELVSGFN+EY  G FA  FLAEY  IL +
Sbjct: 202 FDLTEGESELVSGFNVEYSAGPFAFFFLAEYGMILLM 238


>UniRef50_Q15K54 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Flustrellidra hispida|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Flustrellidra hispida
          Length = 283

 Score =  160 bits (389), Expect = 3e-38
 Identities = 96/225 (42%), Positives = 122/225 (54%), Gaps = 2/225 (0%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F TLLERK L Y+Q RKGPNK G  G++QP SDAIKLFTKE+T   +++   +   PV  
Sbjct: 16  FYTLLERKTLSYMQSRKGPNKPGLSGMVQPLSDAIKLFTKEKTNMFYTSTL-FALVPVL- 73

Query: 184 FIXXXXXXXXIPYIYNL--ICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
           F+          Y  NL  +   LG +  +CL+SL VY +  +GW+SNS YAL+G +R +
Sbjct: 74  FMSLIFTTWWF-YFCNLTSVYICLGAILLICLSSLSVYGIFFSGWTSNSKYALMGSMRGL 132

Query: 358 AQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRT 537
           AQTISYEV                  Y                           AETNRT
Sbjct: 133 AQTISYEV-----CMSILILIAILSLYTADFASMTLPVGLHNPLLLAMWTICIPAETNRT 187

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           PFD AEGE ELVSGFN EY  G F+ +F+AEY S++ + MI  I+
Sbjct: 188 PFDHAEGESELVSGFNTEYSGGLFSFLFIAEYGSVILMSMITSIL 232


>UniRef50_Q06SB9 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=2; Heteroconchia|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Hiatella arctica
          Length = 314

 Score =  160 bits (389), Expect = 3e-38
 Identities = 86/227 (37%), Positives = 121/227 (53%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF  ++ERK LG+ Q+R+GPNK    G+ Q  +D +KL  K   +P  S  + ++  P  
Sbjct: 27  AFFIVVERKGLGHFQLRQGPNKPSIKGIAQALADGVKLMLKGCFFPGNSEKYLFFLGPFL 86

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F          P  ++ I +   + +++CL +LGVY V I GWSSNS+YALLG +R++A
Sbjct: 87  MFSFSYGFWLIFPCYHSSIFYESSMAYYMCLVALGVYGVFICGWSSNSSYALLGAMRALA 146

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q+ISYEV                    F + +                     AETNR P
Sbjct: 147 QSISYEVVLGTLILCPCLYSGGLSVNSFLMTK--GLYGGLSVEIFFLWMAVLLAETNRAP 204

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FDF EGE ELV+GFN+E+   GFALI LAEY SILF  ++  ++ +G
Sbjct: 205 FDFVEGESELVAGFNVEFGGFGFALIALAEYGSILFSSVLTGVLFFG 251


>UniRef50_Q37381 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=117; Eukaryota|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Acanthamoeba castellanii (Amoeba)
          Length = 369

 Score =  160 bits (389), Expect = 3e-38
 Identities = 90/229 (39%), Positives = 120/229 (52%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTL ERKVL  IQ RKGPN  GF+G+LQP +DA+KL  KE   P  ++   ++  P+ 
Sbjct: 24  AFLTLFERKVLASIQKRKGPNWTGFLGILQPLADALKLILKENPVPQNASSVLFFGGPLI 83

Query: 181 RFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             I        IP+    +    N+GIL+   ++SL    +I+AGWSSNS YA LG LRS
Sbjct: 84  LLILSLSAWFVIPFNNETVVSDINIGILYVFMVSSLNTLNIIVAGWSSNSRYAFLGALRS 143

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
           +AQ I+YEV                        Q+                    AETNR
Sbjct: 144 IAQVIAYEVVIGIIIINIIVLSGSLNFLKIVWAQKDLWYAFVLWAQFFLFFIAMLAETNR 203

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            PFD AE E ELVSG+N+E+    FAL FL+EY++I+ +  +  I+  G
Sbjct: 204 HPFDLAEAESELVSGYNVEHSSVLFALFFLSEYANIILLCHVATILFLG 252


>UniRef50_Q3T4B4 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=2; Fungi|Rep: NADH-ubiquinone oxidoreductase chain 1 -
           Smittium culisetae (Gut fungus)
          Length = 323

 Score =  158 bits (384), Expect = 1e-37
 Identities = 89/229 (38%), Positives = 118/229 (51%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTL ERKV+G +Q R GPNKVG  G+LQP +D IKL  KE   P  SN      +P+ 
Sbjct: 20  AFLTLTERKVMGSMQRRVGPNKVGIFGILQPIADGIKLLLKETIIPYQSNKLLLILAPLL 79

Query: 181 RFIXXXXXXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
            F         IP+   Y +    LGI++ L ++S+GV  +I+AGWS NS Y+L+G LR+
Sbjct: 80  IFTINLIGWAPIPFSKGYQISDMELGIIYILAISSIGVVGIILAGWSGNSKYSLMGCLRT 139

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
            AQ +SYE+                      L+Q+                    AETNR
Sbjct: 140 TAQLVSYELLLGLTILTVILIINNFNINNIILFQQSIYFFIPLLPLFIIIFISAIAETNR 199

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            PFD  E E ELVSG   EY    FALIFL EY +++ +  ++ I+  G
Sbjct: 200 PPFDLVESESELVSGAFTEYSSFSFALIFLGEYGAMITMSTLITILFLG 248


>UniRef50_Q9B8G7 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Heterodoxus macropus|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Heterodoxus macropus (wallaby
           louse)
          Length = 297

 Score =  158 bits (383), Expect = 1e-37
 Identities = 86/216 (39%), Positives = 116/216 (53%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK+LGYI  RKGPNKV   G+LQP  DA+KL TK+ +   +SN F YY SP+F
Sbjct: 19  AFFTLLERKILGYIHFRKGPNKVLLKGVLQPIVDAMKLITKDDSPIIYSNIFLYYISPMF 78

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            FI        +P  + +  +    L    L  +GVY + ++GWSSNS YA LG LR+V+
Sbjct: 79  SFIMSMIIWMILPLQFIIFNWVNSFLILFMLLGMGVYSMFLSGWSSNSKYAYLGSLRAVS 138

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q+ISYE+                  Y+   +                      AE NR+P
Sbjct: 139 QSISYEILMSMLFIALMMTTKGMSIYYILKFD---PLVFFLFPFFIAYLFIGLAELNRSP 195

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILF 648
           FD +EGE ELV+G+ +EY    + +IFL+E   I+F
Sbjct: 196 FDLSEGESELVAGYTVEYGGIMYTMIFLSENIMIMF 231


>UniRef50_A7KCS7 Cluster: NADH dehydrogenase subunit 1; n=4;
           Dikarya|Rep: NADH dehydrogenase subunit 1 - Pleurotus
           ostreatus (Oyster mushroom) (White-rot fungus)
          Length = 346

 Score =  158 bits (383), Expect = 1e-37
 Identities = 93/229 (40%), Positives = 118/229 (51%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+T++ERK L   Q R GPN VG+ GLLQPF+DA+KL  KE   P+ SN   ++ +P+ 
Sbjct: 40  AFMTIIERKQLAAHQRRVGPNIVGYYGLLQPFADALKLILKETIIPSQSNKVLFFLAPIS 99

Query: 181 RFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             I        IP+   L    F+LGIL+ L L+SLGVY V++AGWS+NS YA LG LRS
Sbjct: 100 TLIFSLLGWGIIPFGQGLALSDFSLGILYTLALSSLGVYGVLLAGWSANSKYAFLGSLRS 159

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
            A  ISYE+                        Q+                    AET+R
Sbjct: 160 TAAMISYELILSSAILIIILLTGSLNYNTIIEIQQSVWFIIPLLPVFIFYFIAILAETSR 219

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           TPFD  E E ELV+GF  E+    F   FL EYSSI+    I  I+  G
Sbjct: 220 TPFDLQEAESELVAGFFTEHSSVPFVYFFLGEYSSIVLFSCITAILFLG 268


>UniRef50_Q85UH6 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=9; Urochordata|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Ciona savignyi (Pacific transparent sea
           squirt)
          Length = 344

 Score =  157 bits (380), Expect = 3e-37
 Identities = 92/227 (40%), Positives = 114/227 (50%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A L LLERKVLG  QIRKGPN VG  GL+Q   D  KL  K+         F +  SP+ 
Sbjct: 20  ALLVLLERKVLGLAQIRKGPNIVGIYGLMQTILDGGKLILKKLMVLFNIRKFFFLLSPIL 79

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F+        IP  + L     GIL  L ++SL VY  + AGW SN+ Y+L+GG+R VA
Sbjct: 80  GFVLSLMNWFFIPTPFILFHSEYGILLTLVISSLLVYTTLWAGWGSNNIYSLIGGIRGVA 139

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                   FF  +Q                     AE NR P
Sbjct: 140 QMISYEVVLGFFIMLLLLLMGSYNWEFFLYFQSSYVFWGGMFMFMVSWIGMMLAELNRAP 199

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD  EGE ELVSGFN+EY    FAL+FL EY +I F+  I +++ +G
Sbjct: 200 FDLIEGESELVSGFNVEYGGFIFALLFLGEYMNIWFMSWITILLFFG 246


>UniRef50_Q2YA20 Cluster: NADH-quinone oxidoreductase subunit H 2;
           n=6; cellular organisms|Rep: NADH-quinone oxidoreductase
           subunit H 2 - Nitrosospira multiformis (strain ATCC
           25196 / NCIMB 11849)
          Length = 366

 Score =  155 bits (375), Expect = 1e-36
 Identities = 87/239 (36%), Positives = 125/239 (52%), Gaps = 12/239 (5%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGL------LQPFSDAIKLFTKERTYPNFSNYFCY 162
           A+LT  ERK++GY+Q+R GPN+V F G+       QP +DA+K   KE   P+ +N   +
Sbjct: 42  AYLTFAERKIIGYMQLRVGPNRVTFFGIPWLGGWAQPIADAVKAVMKEIIIPSGANKVLF 101

Query: 163 YFSPVFRFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYAL 336
             +P+  F         IP+  +++    N G+L+ L +TS+GVY +IIAGW+SNS YA 
Sbjct: 102 VLAPILTFAPALAAWAVIPFSPDVVLADINAGLLYILAMTSMGVYGIIIAGWASNSKYAF 161

Query: 337 LGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE----XXXXXXXXXXXXXXX 504
           LG +RS AQ +SYE+                        Q+                   
Sbjct: 162 LGAMRSAAQVVSYELAMGFALVCVLMMSQSLNLGDIVKGQQGASMLNWYLIPLFPMFLVY 221

Query: 505 XXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
                AETNR PFD AEGE E+V+GF++EY    F + FLAEYS+++ + M+  II  G
Sbjct: 222 FISGVAETNRAPFDVAEGESEIVAGFHVEYSGMAFTVFFLAEYSNMILVAMLASIIFLG 280


>UniRef50_Q0H8X5 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=10; Fungi|Rep: NADH-ubiquinone oxidoreductase chain 1
           - Ustilago maydis (Smut fungus)
          Length = 331

 Score =  155 bits (375), Expect = 1e-36
 Identities = 90/229 (39%), Positives = 119/229 (51%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+T++ERKV+G +Q R GPN VG+  LLQPF+DA+KL  KE+  P+ +    ++ +P+ 
Sbjct: 23  AFMTVIERKVMGSMQRRIGPNVVGYYALLQPFADALKLVIKEQVIPSQATKSLFFLAPMV 82

Query: 181 RFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             I        IP    L    F+LGIL+ L L+S+GVY ++ AGWS+NS YA LG LRS
Sbjct: 83  TLIFSLLGWGVIPLGPGLALSDFSLGILYSLALSSIGVYGILFAGWSANSKYAFLGSLRS 142

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
            AQ ISYE+                        Q+                    AETNR
Sbjct: 143 TAQMISYELIYSAAVLAVILLCGTFNITEIIESQQSVWYIMPLLPIFILFFVSALAETNR 202

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           TPFD  E E ELV+GF  E+    F   FLAEY SI+ +     I+  G
Sbjct: 203 TPFDLPEAESELVAGFMTEHSGMIFVFFFLAEYGSIVLMSTFTAILFLG 251


>UniRef50_Q8WF33 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=2; Venerupis (Ruditapes) philippinarum|Rep:
           NADH-ubiquinone oxidoreductase chain 1 - Venerupis
           (Ruditapes) philippinarum
          Length = 309

 Score =  153 bits (370), Expect = 5e-36
 Identities = 83/220 (37%), Positives = 116/220 (52%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF  + ERK LG +Q+R+GPNKVG  GL+Q  +D +KLFTKE   P F++   Y   P+ 
Sbjct: 15  AFFIVTERKGLGMLQLRQGPNKVGLKGLVQFLADGVKLFTKEMIMPLFASEGLYTVGPLI 74

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F          P +++ +   LG+LFFLC++S  VY V + GWS +S Y  LG +R++A
Sbjct: 75  CFFCAYSLWVLFPMMFSSLKITLGLLFFLCVSSAAVYGVFMVGWSCDSRYGFLGAMRAIA 134

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q++SYEV                                              AETNR P
Sbjct: 135 QSVSYEV--FLSTCLFCPLILTGSYDLIESRCSPFSSVFIGFEVLVLWVICILAETNRPP 192

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
           FDF EGE ELV+G+ +E+    FAL+ LAEYS++ F+ M+
Sbjct: 193 FDFVEGESELVAGYMVEFGGVNFALLALAEYSNMAFMSML 232


>UniRef50_P24875 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=22; Chromadorea|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Ascaris suum (Pig roundworm) (Ascaris
           lumbricoides)
          Length = 290

 Score =  151 bits (366), Expect = 2e-35
 Identities = 81/227 (35%), Positives = 114/227 (50%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+TL ER +LG  Q R GPNKV F+G LQ   D +KL  KE+  P  S+   +   P  
Sbjct: 20  AFVTLYERHLLGGSQQRIGPNKVSFMGFLQAIFDGVKLLKKEQMTPLNSSEISFILVPGI 79

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            FI        +P+ Y+ + F   ILFFLCL    VY  +++G  S S Y ++G +R+ +
Sbjct: 80  FFIVMYLEWFVLPFFYDFMTFEYSILFFLCLIGFSVYTTLVSGMVSKSKYGMVGAIRASS 139

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q++SYE+                  + F+                        AE NR P
Sbjct: 140 QSVSYEIAFSLYLLAIVMHINMFCFFSFF--------NLSLFIVYLPFLFMVLAELNRAP 191

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FDFAEGE ELVSG+N+EY    F L+FL EY ++LF   +  ++ +G
Sbjct: 192 FDFAEGESELVSGYNVEYSSVAFVLLFLGEYGALLFFSTLTSVLFFG 238


>UniRef50_Q6EF18 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=78; Braconidae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Cotesia acuminata
          Length = 218

 Score =  150 bits (363), Expect = 4e-35
 Identities = 74/191 (38%), Positives = 106/191 (55%)
 Frame = +1

Query: 106 IKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLG 285
           IKL  KE  +P  S+++ Y  SP+  FI         P+  NL+ F   +L+FLC+ SLG
Sbjct: 1   IKLLNKEYFFPMKSSFYLYIMSPMMMFILIMMTWMIYPFYSNLLFFENNMLYFLCMMSLG 60

Query: 286 VYIVIIAGWSSNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXX 465
           +Y +I+AGWSSNS+++++G +RS+AQ+ISYEV                  +    + +  
Sbjct: 61  IYSLILAGWSSNSSFSMIGSIRSIAQSISYEVVFSIIILIMMTNINSMNLFNLIFFNKFN 120

Query: 466 XXXXXXXXXXXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSIL 645
                             AE NRTPFD +EGE ELVSGFNIEY    F LIFL+EYSSI+
Sbjct: 121 NFSLIYFPLMLIILFTMLAEINRTPFDLSEGESELVSGFNIEYSSSKFILIFLSEYSSII 180

Query: 646 FIRMILVIIKY 678
           F+  +  ++ +
Sbjct: 181 FMMFLFCLLMF 191


>UniRef50_Q4W8E1 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=4; Leptotrombidium|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Leptotrombidium pallidum
          Length = 293

 Score =  149 bits (361), Expect = 6e-35
 Identities = 82/222 (36%), Positives = 115/222 (51%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F TL+E ++LG I +R GP +VG IG+ QP SD +KLF K   +P  SN   Y+ SP+  
Sbjct: 18  FFTLMEVQMLGKIHLRLGPTRVGMIGIFQPLSDFLKLFNKSFWFPQKSNLSIYFISPLLC 77

Query: 184 FIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQ 363
                         + L      IL F CL+SL V+ ++++GW+S+S Y+LLG  RS AQ
Sbjct: 78  LFVGFIVWHGYGTKFPLTNIKWSILSFFCLSSLLVFYLLMSGWASSSTYSLLGSYRSAAQ 137

Query: 364 TISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPF 543
           TISYEV                    + L +E                    AE+NRTPF
Sbjct: 138 TISYEV--CLIFIIFSSIFFVKTFSIWELSEETPMLSLIHPILLLIWIFSCLAESNRTPF 195

Query: 544 DFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVI 669
           D  EGE ELVSGFN E++ G  +  F+ EY+ ++F+  + +I
Sbjct: 196 DLTEGESELVSGFNTEFQGGLLSFFFITEYAFMIFLSFLTII 237


>UniRef50_P08774 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=60; Fungi|Rep: NADH-ubiquinone oxidoreductase chain 1
           - Neurospora crassa
          Length = 371

 Score =  149 bits (361), Expect = 6e-35
 Identities = 88/229 (38%), Positives = 116/229 (50%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A++T+ ERK +  +Q R GPN VG++GLLQ F+DA+KL  KE      +N   ++  PV 
Sbjct: 25  AYVTVAERKTMASMQRRLGPNAVGYLGLLQAFADALKLLLKEYVALTQANMTLFFLGPVI 84

Query: 181 RFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             I        IPY  +L+    NLGIL+ L ++SL  Y +++AGWS+NS YA LG LRS
Sbjct: 85  TLIFSLLGYAVIPYGPSLVIQDVNLGILYMLAVSSLATYGILLAGWSANSKYAFLGSLRS 144

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
            AQ ISYE+                        Q                     AETNR
Sbjct: 145 AAQLISYELVLSSAILLVIMLTGSFNLGVNTESQRAVLFVLPLLPIFIIFFIGSIAETNR 204

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            PFD AE E ELVSGF  E+    F   FLAEY SI+ + ++  I+  G
Sbjct: 205 APFDLAEAESELVSGFMTEHAAVVFVFFFLAEYGSIVLMCILTSILFLG 253


>UniRef50_Q950Q6 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=6; Chytridiomycota|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Spizellomyces punctatus
          Length = 301

 Score =  148 bits (358), Expect = 1e-34
 Identities = 85/230 (36%), Positives = 113/230 (49%), Gaps = 3/230 (1%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A +TL ER ++G +Q R GPNKVG++GLLQPF+D IKL  KE   P  S+++ +  +P  
Sbjct: 16  ALMTLAERNIMGAMQRRIGPNKVGYLGLLQPFADGIKLILKETVLPLESSHWLFLGAPFV 75

Query: 181 RFIXXXXXXXXIPYIYNLICFNL---GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLR 351
            F         +P  Y +    L   GIL  + ++ L +Y VI +GW++NS Y  LG LR
Sbjct: 76  TFYLALLNWLVLPLDYGVALSELLGGGILILIAISELSIYGVIYSGWAANSKYPFLGSLR 135

Query: 352 SVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETN 531
           S AQ ISY V                        Q+                    AETN
Sbjct: 136 STAQMISYSVSLSLILLTVIFTLGTVNLLDILAAQQPVSLFYPLLPMAILFMISAVAETN 195

Query: 532 RTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           R PFD  E E ELV+GF  E+    FA  FL EY+SIL I  +  I+ +G
Sbjct: 196 RAPFDLPEAESELVAGFFTEHSAVSFAYFFLGEYTSILVICTLFFILFFG 245


>UniRef50_Q2HJL2 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Campanulotes bidentatus compar|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Campanulotes bidentatus compar
           (small pigeon louse)
          Length = 299

 Score =  146 bits (353), Expect = 6e-34
 Identities = 87/223 (39%), Positives = 114/223 (51%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF +L ERK++G +Q RKGPNKVG  G+LQPF+DA+KL +K    P+    F Y  SP+ 
Sbjct: 23  AFFSLYERKLMGLVQGRKGPNKVGVGGVLQPFADAMKLISKNEYAPSKVIKFIYAVSPMI 82

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F          P I+N    NL I+F L L S+ VY  I++GW S+S YA +G  R++A
Sbjct: 83  SFFISLVFWIMYPVIWNFFSLNLSIVFLLVLFSVSVYGFILSGWFSSSKYANIGCARALA 142

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q+ISYEV                        QE                    AETNR P
Sbjct: 143 QSISYEVGLTLSIIFFCLFFSCISLSEILEVQE-FFFFFPFSFLFVFMWSIFFAETNRPP 201

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVI 669
           FD AEGE EL  GF ++       LIFL E  S+LF+ ++L +
Sbjct: 202 FDLAEGESELKKGFCVKKGEMSNPLIFLGENLSVLFVSILLKV 244


>UniRef50_P24887 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=24; Chromadorea|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Caenorhabditis elegans
          Length = 291

 Score =  146 bits (353), Expect = 6e-34
 Identities = 79/220 (35%), Positives = 111/220 (50%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+TL ER +LG  Q R GP KV F+GL Q   D +KL  KE+  P  S+   +   P  
Sbjct: 20  AFITLYERHLLGSSQNRLGPTKVTFMGLAQALLDGVKLLKKEQMTPLNSSEVSFLLVPGI 79

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F+        +PY ++ I F   +LFFLCL    VY  +I+G  S S Y ++G +R+ +
Sbjct: 80  SFVVMYLEWFTLPYFFDFISFEYSVLFFLCLIGFSVYTTLISGIVSKSKYGMIGAIRASS 139

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q+ISYE+                      ++                      AE NR P
Sbjct: 140 QSISYEIAFSLYVLCIIIHNN--------VFNFVSKFNLSLLIIYIPFLIMVIAELNRAP 191

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
           FDF+EGERELV GFN+E+ R  F L+FL+EY S++F  ++
Sbjct: 192 FDFSEGERELVRGFNVEFARVAFVLLFLSEYGSLIFFSVL 231


>UniRef50_Q82TV0 Cluster: NADH-quinone oxidoreductase subunit H;
           n=313; cellular organisms|Rep: NADH-quinone
           oxidoreductase subunit H - Nitrosomonas europaea
          Length = 366

 Score =  145 bits (352), Expect = 8e-34
 Identities = 85/239 (35%), Positives = 120/239 (50%), Gaps = 12/239 (5%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFI------GLLQPFSDAIKLFTKERTYPNFSNYFCY 162
           A+LT  ERK++ Y+Q+R GPN+V F       G  QP +DA+K   KE   P  +N F +
Sbjct: 42  AYLTFAERKIIAYMQVRVGPNRVTFFDIPWLRGWGQPIADAVKAIMKEIIIPTGANKFLF 101

Query: 163 YFSPVFRFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYAL 336
             +PV            +P+   L+    N G+L+ L +TSLGVY VIIAGW+SNS YA 
Sbjct: 102 LLAPVLAIGPALAAWAVVPFSPELVLADINAGLLYILAMTSLGVYGVIIAGWASNSKYAF 161

Query: 337 LGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE----XXXXXXXXXXXXXXX 504
           LG +RS AQ +SYE+                        Q+                   
Sbjct: 162 LGAMRSAAQVVSYELAMGFALVCVLMMSSSLNLGDIVAGQQGGSFLNWYLIPLFPMFLVY 221

Query: 505 XXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
                AETNR PFD AEGE E+V+GF+++Y    F + FLAEY++++ +  +  I+  G
Sbjct: 222 FISGVAETNRAPFDVAEGESEIVAGFHVDYSGMAFTVFFLAEYANMILVATLASIMFLG 280


>UniRef50_Q68PI9 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=5; Aleyrodinae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Vasdavidius concursus
          Length = 307

 Score =  144 bits (348), Expect = 2e-33
 Identities = 80/220 (36%), Positives = 109/220 (49%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK++ + Q R GP KV F+G++QP SDA+KL +KE      SN   +   P+ 
Sbjct: 20  AFFTLLERKMISFSQNRTGPMKVSFLGIIQPISDAMKLISKETKLNLKSNSMLFILCPMI 79

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             I        +P  Y      + +LF L   +     ++I  WSSNSNYA++  +R++A
Sbjct: 80  NLITSILIWTIMPSEYMFNFMKMSLLFMLAAMATNTVSIMIMSWSSNSNYAMISMIRTIA 139

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYE+                     Y                        AET+R+P
Sbjct: 140 QMISYEINIILIVLTFMVIMEKMNLSSCY---NNIMLSMYMPYMLIMWLITIMAETSRSP 196

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
           FDF+E E EL+SGFNIEY    F  +FLAEYS IL + M+
Sbjct: 197 FDFSESESELISGFNIEYSSKSFVFLFLAEYSMILNLSMV 236


>UniRef50_Q2QAT5 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=6; Unionidae|Rep: NADH-ubiquinone oxidoreductase chain
           1 - Lamprotula rochechouarti
          Length = 206

 Score =  143 bits (347), Expect = 3e-33
 Identities = 70/127 (55%), Positives = 83/127 (65%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK LGY QIRKGPNKVG IG+ QP +DA+KLF KE   P  SNY  +  +P  
Sbjct: 21  AFFTLLERKALGYFQIRKGPNKVGMIGIPQPLADALKLFVKEWVMPTSSNYLPFIMTPTI 80

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             I         P         LG+L FLC++SL VY  ++AGWSSNS YALLG +R++A
Sbjct: 81  MLILALSLWQLYPSFMLTSQMILGMLLFLCISSLAVYTTLMAGWSSNSKYALLGAIRAMA 140

Query: 361 QTISYEV 381
           QTISYEV
Sbjct: 141 QTISYEV 147


>UniRef50_Q2RYV5 Cluster: NADH-quinone oxidoreductase subunit H;
           n=3; Sphingobacteriales genera incertae sedis|Rep:
           NADH-quinone oxidoreductase subunit H - Salinibacter
           ruber (strain DSM 13855)
          Length = 345

 Score =  143 bits (347), Expect = 3e-33
 Identities = 83/234 (35%), Positives = 114/234 (48%), Gaps = 7/234 (2%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           + L   ER+V  +IQ R GPN+VG +GLLQPF+D +K   KE   P  SN F +  +PV 
Sbjct: 24  SLLVFAERRVSAFIQNRPGPNRVGPLGLLQPFADVLKFVLKEDVQPAQSNKFIHSMAPVV 83

Query: 181 RFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             +        IP+   ++    N+G++  L LTS+ VY V +AGWSSNS ++LLGGLRS
Sbjct: 84  MVVIAMTTASLIPFAEGVVVADLNVGVIMLLALTSISVYGVTLAGWSSNSKFSLLGGLRS 143

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-----XXXXXXXXXXXXXXXXXXXX 519
            AQ +SYE+                       +Q                          
Sbjct: 144 AAQMVSYELSMGLAVISVVLIAGSLNFMEIVEHQSSGGALLGWNAVRNPIGCLIFIVTAF 203

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AETNR PFD  E E ELV+G++ EY    F + FLAEY +       +V + +G
Sbjct: 204 AETNRAPFDLPEAEEELVAGYHTEYSGMKFGMFFLAEYVNWFIASFFIVTLFFG 257


>UniRef50_Q6VEI0 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Siphonodentalium lobatum|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Siphonodentalium lobatum
          Length = 295

 Score =  143 bits (346), Expect = 4e-33
 Identities = 87/222 (39%), Positives = 115/222 (51%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           +F T++ERK L Y Q RKGPNKV F+GLLQ  +D +KL +K    P  SN+  +  +P+ 
Sbjct: 21  SFYTIVERKCLSYAQSRKGPNKVVFLGLLQAVADGVKLLSKSMNEPFKSNFVYFTGAPMV 80

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                      +P +         IL  LCL  + VY +I +GW S S+Y+++G +R+VA
Sbjct: 81  MLGISLTCWYFLPGLGFKSAVG-PILLVLCLFGVNVYCLIFSGWCSYSSYSMIGCVRAVA 139

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q++SYEV                    F+L                       AETNR P
Sbjct: 140 QSVSYEV-----CSFFSYCAQQLLEVTFFL-GSSTSFFFSFLFIVILWMFVCMAETNRAP 193

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILV 666
           FDFAEGE ELVSGFN+EY    F LIFLAEY  ILF+  + V
Sbjct: 194 FDFAEGESELVSGFNVEYGSSLFTLIFLAEYGFILFLSSLTV 235


>UniRef50_Q9ZY22 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Pedinomonas minor|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Pedinomonas minor
          Length = 310

 Score =  141 bits (342), Expect = 1e-32
 Identities = 83/227 (36%), Positives = 109/227 (48%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFL L+ERKV+ YIQ R+GP  VGF G LQ  +D +KL  K            YY SP  
Sbjct: 27  AFLVLIERKVIAYIQRRRGPVFVGFWGALQSIADGLKLILKTNLSVFGIEKSIYYASPFI 86

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F         IP  + L   ++ + F L L S+GVY +++AG SS+S +A LGGLRS A
Sbjct: 87  SFFISLLSWVFIPLGFLLQDSDISLFFILALNSIGVYGILLAGLSSSSRWAFLGGLRSAA 146

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYE+                       +QE                    AE NR P
Sbjct: 147 QIISYELSLNICIFSIILCVGGLSIIKVVSFQENILLVFPLLPFILISFIISLAEINRAP 206

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD  E E ELV+G+N++Y    F   FL EY+ I+ I  I+  + +G
Sbjct: 207 FDLPEAEAELVAGYNVDYGAINFTFFFLGEYTHIVLISFIMAKLFFG 253


>UniRef50_Q9T7K1 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=3; Crassostrea|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Crassostrea gigas (Pacific oyster)
           (Crassostrea angulata)
          Length = 340

 Score =  138 bits (333), Expect = 2e-31
 Identities = 78/222 (35%), Positives = 107/222 (48%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+ TL+ERK L  + IR GP+K+ F GL QP SD +KLFTKE   P+ S    ++  P  
Sbjct: 50  AYFTLMERKCLSSLGIRLGPDKISFAGLAQPISDGMKLFTKEFVAPSNSAKLGFFLIPCV 109

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             +         P           ILFFL ++S+  ++ I++GW+S+S YA +GG+R  A
Sbjct: 110 AMLLCFLGWQIYPCSSTSPSMGNDILFFLVVSSVNAHVAIMSGWTSSSKYASVGGVRGFA 169

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYE+                  +                           AE NR P
Sbjct: 170 QVISYEICLSITLVAVMFFSGSMSFFSLSDSGWSMWWGLYCAPVAALWVVICLAEANRAP 229

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILV 666
           FD  E E ELVSGFN E+  G FA +F+AEY  IL + ++ V
Sbjct: 230 FDLVEAESELVSGFNTEFSAGSFAGLFIAEYGMILLMCLVTV 271


>UniRef50_Q9B8A1 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Trichinella spiralis|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Trichinella spiralis (Trichina
           worm)
          Length = 299

 Score =  137 bits (332), Expect = 2e-31
 Identities = 80/221 (36%), Positives = 109/221 (49%), Gaps = 4/221 (1%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+TL+ER+ +G  Q R GPNKV   GL+QP  D +KL  K     N  N   Y   P+ 
Sbjct: 20  AFVTLMERQYIGISQRRLGPNKVSITGLMQPILDGLKLTLKSTKKTNKLNPTFYLLMPIM 79

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                      +P +YN I F + +LF + L  +  + ++++GW SNS YA  G LRS++
Sbjct: 80  NLTLFTLFWWGLPLLYNPISFQVNLLFTITLMGIMSFGIVLSGWVSNSKYATYGSLRSMS 139

Query: 361 QTISYEV----RXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAET 528
           Q+ISYEV                        FY ++                     AET
Sbjct: 140 QSISYEVCLSTTLLMIMMLKDSYNLATTKTGFYYFE-----PTITLALTIPATIMILAET 194

Query: 529 NRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFI 651
           NR+PFD AE E ELVSGFNIE+    FA +F+AEY  I+ +
Sbjct: 195 NRSPFDLAEAESELVSGFNIEFSSVEFAFLFMAEYGMIILL 235


>UniRef50_A5UVG2 Cluster: NADH dehydrogenase; n=5; Chloroflexi
           (class)|Rep: NADH dehydrogenase - Roseiflexus sp. RS-1
          Length = 391

 Score =  137 bits (331), Expect = 3e-31
 Identities = 83/237 (35%), Positives = 113/237 (47%), Gaps = 10/237 (4%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+ TL ER+ L  +Q R GPN+ G  G LQP +DA+KLF KE   P  ++ + Y  SP F
Sbjct: 25  AYFTLFERRTLARLQNRVGPNRAGPGGFLQPIADAVKLFFKEDVTPLLADRWVYLVSPAF 84

Query: 181 RFIXXXXXXXXIPY----------IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNY 330
             I        IP              L   N+G+L+ L +TS+GVY + IAGW+SN+ Y
Sbjct: 85  ALIPAIIIWATIPVGMWPDGQGGNWLQLAEINVGVLYLLAVTSVGVYGIAIAGWASNNKY 144

Query: 331 ALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXX 510
           ++LGG+R+ AQ ISYE+                        Q                  
Sbjct: 145 SMLGGIRASAQVISYELALGLTVLGAVMQTQSFSTAEIVERQMQMWNIVPQFLGFVVFII 204

Query: 511 XXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
              AE  R PFD  E E+ELV G+N EY    FAL F++EY  ++ +  I V +  G
Sbjct: 205 AATAEVVRAPFDLVEAEQELVGGYNTEYSSMKFALFFMSEYVKLVAMNAIAVTLFLG 261


>UniRef50_Q00L96 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=120; Protostomia|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Branchellion sp. Borneo
          Length = 205

 Score =  137 bits (331), Expect = 3e-31
 Identities = 74/186 (39%), Positives = 94/186 (50%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK+LGY Q+RKGPNKV  +G+ QP +DA KLF KE+  P  SN   +  SP+ 
Sbjct: 21  AFYTLLERKLLGYFQLRKGPNKVSIMGIPQPLADAAKLFLKEQHTPMTSNKLSFIMSPIL 80

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       P++         IL+ LC++++ VY   ++GWSSNS Y+LLG LR VA
Sbjct: 81  GLFLTLMLWGSYPHLNPSFWIQFSILYILCVSAMNVYATFVSGWSSNSKYSLLGALRGVA 140

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QTISYE+                      L                       AETNR+P
Sbjct: 141 QTISYEISMSLILLSVLLMTMNMDMNKINL-NSMSPLFMSLILITILWFITNLAETNRSP 199

Query: 541 FDFAEG 558
           FDFAEG
Sbjct: 200 FDFAEG 205


>UniRef50_Q9T9H0 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Halocynthia roretzi|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Halocynthia roretzi (Sea
           squirt)
          Length = 298

 Score =  136 bits (330), Expect = 4e-31
 Identities = 86/229 (37%), Positives = 113/229 (49%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFL LLERK+ G  Q+R GPN VG  GL+Q   D +KL  K     +  N+F +   P+ 
Sbjct: 17  AFLVLLERKIFGLTQVRLGPNVVGASGLVQTIGDGVKLLLKRFFLFSKLNFF-FRVCPMV 75

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            FI        +P+  +L      +LF   ++ + VY+V+ AGW S+S + LLG +R V+
Sbjct: 76  GFILSIVHWLVLPFPGSLWHMGWSVLFTFAVSGVLVYVVLWAGWGSDSVFGLLGSVRGVS 135

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE--XXXXXXXXXXXXXXXXXXXXAETNR 534
           Q ISYEV                  Y+     E                      AE NR
Sbjct: 136 QMISYEV---VFMFFVLLFSIEVWSYWLGGVCEGTGVFGIYFKFLLVLVWGVIVLAELNR 192

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           TPFD  EGE ELVSGFN+EY   GF L+FLAEY +I FI  +  I  +G
Sbjct: 193 TPFDLVEGESELVSGFNVEYAGFGFTLLFLAEYMNIWFISFLSTIFFFG 241


>UniRef50_Q6SL32 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Armillifer armillatus|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Armillifer armillatus
          Length = 305

 Score =  136 bits (330), Expect = 4e-31
 Identities = 80/216 (37%), Positives = 110/216 (50%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+TL+ERK+L  +Q R+GPNKVG  G LQPFSDA+KL +K        +   Y      
Sbjct: 20  AFVTLVERKILSLVQWREGPNKVGG-GYLQPFSDALKLVSKGWVVLGEGDLGGYVMGAWL 78

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       P  + +      +L F+ + S+ VY ++++GW SNS Y LLGG+RSVA
Sbjct: 79  FIFLMMLLWGMYPTFWGVYSLEWTLLCFILVLSVSVYGLLVSGWMSNSKYGLLGGVRSVA 138

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           QT+SYEV                  Y   +  E                    +E NR+P
Sbjct: 139 QTVSYEV---SLVLVVMYWVLYMGGYGLEVTMEGVWLVFLNILMFVIMGVVCISELNRSP 195

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILF 648
           FDF+EGE ELVSG+N+EY    F  IF++EY  ++F
Sbjct: 196 FDFSEGESELVSGYNVEYGSLLFVYIFMSEYGFVVF 231


>UniRef50_Q3ZXR7 Cluster: NADH-quinone oxidoreductase subunit H;
           n=5; Bacteria|Rep: NADH-quinone oxidoreductase subunit H
           - Dehalococcoides sp. (strain CBDB1)
          Length = 353

 Score =  136 bits (328), Expect = 6e-31
 Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 2/224 (0%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           LER+++G  Q+R GPN+ G  GLLQP +DAIK+  KE   P+ ++   ++ +P+  F+  
Sbjct: 29  LERRLIGRFQLRPGPNRAGPFGLLQPIADAIKVLIKEDIIPSEADKGVFWLAPLVAFVPV 88

Query: 196 XXXXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTI 369
                 IP+     L+  N+GIL+ L ++S+ V  + +AGWSSN+ Y+LLG +R++AQ +
Sbjct: 89  MLMFAAIPFADGVMLVDLNIGILYILAVSSVTVIGIFMAGWSSNNKYSLLGAMRTIAQEV 148

Query: 370 SYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFDF 549
           SYE+                        Q+                    AE NRTPFD 
Sbjct: 149 SYEIPLVLSILGVVMLTGSLSMNEIVKAQD-VPFILLQPLGFFVYLSAAMAEVNRTPFDL 207

Query: 550 AEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            E E E+++GF+ EY    F L +L EY+ +L +  I   +  G
Sbjct: 208 LEAESEIIAGFHTEYSGMKFGLFYLMEYAEVLAVSAIATTLFLG 251


>UniRef50_Q8F7Q5 Cluster: NADH-quinone oxidoreductase subunit H;
           n=4; Leptospira|Rep: NADH-quinone oxidoreductase subunit
           H - Leptospira interrogans
          Length = 346

 Score =  135 bits (327), Expect = 8e-31
 Identities = 89/248 (35%), Positives = 116/248 (46%), Gaps = 21/248 (8%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+ TL ERKV G+IQ RKGPN+ GF GLLQP +D IK  TKE  +P   N   Y  +P  
Sbjct: 25  AYYTLAERKVAGFIQDRKGPNRAGFWGLLQPLADGIKFLTKEEVFPVQVNKVMYLIAPAI 84

Query: 181 RFIXXXXXXXXIPY-----------------IYNLICFN--LGILFFLCLTSLGVYIVII 303
                      +P                    +L   N   GILF   ++SL VY +II
Sbjct: 85  SMTCAIMAWSVVPLGGQIPLPSWLQEKTGLTFLDLQIANPDTGILFLFAISSLAVYGIII 144

Query: 304 AGWSSNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE--XXXXXX 477
           AGW+SN+ Y+LLG +RS AQ ISYE+                        Q         
Sbjct: 145 AGWASNNKYSLLGAVRSTAQMISYELPLGMSVVSIVILSGSLRLTDISASQVGLWNIFKL 204

Query: 478 XXXXXXXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRM 657
                         AETNR PFD AE E ELV GF+ EY    FAL F+AEY +++ +  
Sbjct: 205 PGFIAFCLFVVAMFAETNRLPFDLAEAESELVVGFHTEYGAFKFALFFIAEYMNMITMSC 264

Query: 658 ILVIIKYG 681
           ++ ++ +G
Sbjct: 265 VVTLLFFG 272


>UniRef50_Q1AVI7 Cluster: NADH-quinone oxidoreductase subunit H;
           n=1; Rubrobacter xylanophilus DSM 9941|Rep: NADH-quinone
           oxidoreductase subunit H - Rubrobacter xylanophilus
           (strain DSM 9941 / NBRC 16129)
          Length = 331

 Score =  133 bits (321), Expect = 4e-30
 Identities = 80/219 (36%), Positives = 110/219 (50%), Gaps = 5/219 (2%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A LTL ERKV  YIQ+R GPN+VG  GLLQP +D +KLF KE   P  ++ + +  +P+ 
Sbjct: 29  AVLTLAERKVSAYIQLRYGPNRVGPRGLLQPAADVVKLFIKENVSPGRADRWVFLAAPIA 88

Query: 181 RFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
            F+        IP+   ++    N+G+++F  +TS+G   VI+AG+ S SN++LLG LR 
Sbjct: 89  MFLPAAAVWLVIPFGPGMVVADLNIGLVYFFAITSIGALGVIMAGYGSRSNFSLLGALRG 148

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE---XXXXXXXXXXXXXXXXXXXXAE 525
             Q ISYEV                       YQ                        AE
Sbjct: 149 AGQMISYEVPLILSLLGVAMLTGSLSMVDIVEYQAGGFWNWIIWPQLPMFLAFFVSGLAE 208

Query: 526 TNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSI 642
             R PFD  EGE E+V GF IEY    +ALI  +E++S+
Sbjct: 209 VKRIPFDLPEGESEIVGGFMIEYSGMTWALIQASEFASM 247


>UniRef50_A2D6E8 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=8; Bilateria|Rep: NADH-ubiquinone oxidoreductase chain
           1 - Gyrodactylus salaris (Flatworm)
          Length = 295

 Score =  131 bits (317), Expect = 1e-29
 Identities = 82/219 (37%), Positives = 104/219 (47%), Gaps = 2/219 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF  L ERKVLGYIQ+RKGPNK G  GL+Q F+D  KL  K +TY +F     +    V+
Sbjct: 19  AFFILAERKVLGYIQLRKGPNKTGIAGLMQSFADLAKLVLKAKTY-SFQYRSLFSLFGVY 77

Query: 181 RFIXXXXXXXXIPYIYNLICFNLG--ILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             +        I  ++NL  +N    +L F  LTSL  Y ++  GW SN+ Y+L G LRS
Sbjct: 78  LIVLVSMLYCNIYALFNL-GYNSPYLLLMFFLLTSLSSYSILSVGWGSNNKYSLYGSLRS 136

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
               +SYE+                  Y  Y                         ETNR
Sbjct: 137 SFGAVSYEMSFMCFLLTIGSVLGFYSLYDSYFSYSVYSSILLLWPIYLIFILCSLCETNR 196

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFI 651
            PFDFAE E +LVSGFN E+    F  +F  EY  I+FI
Sbjct: 197 VPFDFAESESDLVSGFNTEFCNLHFVCLFACEY-LIVFI 234


>UniRef50_Q5KUJ9 Cluster: NADH-quinone oxidoreductase subunit H;
           n=12; Firmicutes|Rep: NADH-quinone oxidoreductase
           subunit H - Geobacillus kaustophilus
          Length = 333

 Score =  130 bits (314), Expect = 3e-29
 Identities = 77/233 (33%), Positives = 115/233 (49%), Gaps = 6/233 (2%)
 Frame = +1

Query: 1   AFLT---LLERKVLGYIQIRKGPNKVGF-IGLLQPFSDAIKLFTKERTYPNFSNYFCYYF 168
           AF+T   L ERKV+G++Q R GPN+VG   GLLQ  +D +KL  KE T P  ++   Y  
Sbjct: 31  AFVTYGILAERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDTIPKAADRPLYVL 90

Query: 169 SPVFRFIXXXXXXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLG 342
           +P+  F+        +P+   +      +G+L+++ ++ L    V+  GW+SN+ YALLG
Sbjct: 91  APIIAFVPSFMVLAVLPFTDAFRFADIGVGLLYYIAVSGLTTVGVVAGGWASNNKYALLG 150

Query: 343 GLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXA 522
           G+R+ AQ ISYE+                        Q+                    A
Sbjct: 151 GMRAAAQMISYEIPLVMSALGVVLLAGSMNLVDIVAAQKDVWFIFAQPLAFLIFLIAAVA 210

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           E NRTPFD  E E ELV+GF++EY    +A   LAEY  +  +  ++ I+  G
Sbjct: 211 ELNRTPFDLPEAESELVAGFHVEYSGFRWAFFMLAEYVYLFAMAALVTILFLG 263


>UniRef50_A3RE56 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=2; Metaseiulus occidentalis|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Metaseiulus occidentalis
           (western predatory mite)
          Length = 270

 Score =  129 bits (311), Expect = 7e-29
 Identities = 78/218 (35%), Positives = 109/218 (50%), Gaps = 2/218 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTL+ERK+LGY+QIRKGPNK+  +GL+QP  D +KLF KE  Y    N F +   P  
Sbjct: 17  AFLTLMERKILGYMQIRKGPNKMSVLGLVQPVLDGMKLFMKESFYIKSVNKFMFNVFPFL 76

Query: 181 RFIXXXXXXXXIPY-IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
            F+          +  Y+++ ++L  +FF+ ++ L V+ V+   W+SNS YALLG  R V
Sbjct: 77  FFMLMMNCWFMYMFNKYHIVSYSL--VFFILISGLSVHSVLGVSWASNSKYALLGAYRLV 134

Query: 358 AQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-XXXXXXXXXXXXXXXXXXXXAETNR 534
           +QT+SYEV                      ++                       AE NR
Sbjct: 135 SQTVSYEVGLVFLLMNFVLLSKSYNLLDLMVFNNFSLMSFYIMFNLFLIWLVVMLAELNR 194

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILF 648
            PF F    +       IE+  G FAL+FLAEY +I+F
Sbjct: 195 APFVFLWESKSAGFWVYIEFGSGKFALLFLAEYGNIIF 232


>UniRef50_A0LJM4 Cluster: NADH-quinone oxidoreductase subunit H 2;
           n=5; Proteobacteria|Rep: NADH-quinone oxidoreductase
           subunit H 2 - Syntrophobacter fumaroxidans (strain DSM
           10017 / MPOB)
          Length = 331

 Score =  128 bits (310), Expect = 9e-29
 Identities = 79/238 (33%), Positives = 110/238 (46%), Gaps = 11/238 (4%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+L  LERK L  +QIR GPN+ G  GLLQP +D +K+  KE T P  +    +  +P  
Sbjct: 27  AYLVWLERKFLARLQIRYGPNRAGKFGLLQPIADIVKMVAKEDTVPEGAERTIFMLAPAV 86

Query: 181 RFIXXXXXXXXIPYIYNLICF-----------NLGILFFLCLTSLGVYIVIIAGWSSNSN 327
                      IP+  ++  +           N+G+L+F  L+SLGVY V + GW+SNS 
Sbjct: 87  VAATALLVFAVIPFGKDVTLWGMKIPLVVADLNVGLLYFFALSSLGVYGVALGGWASNSK 146

Query: 328 YALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXX 507
           Y+LLGG+R  AQ ISYE+                        QE                
Sbjct: 147 YSLLGGIRGAAQMISYELSLGLAIVPVVMQARSFSLVDIVQAQEKYPFILTQPVAFAIFV 206

Query: 508 XXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
               AE  R PFD  E E EL +GF+ EY    F L FL EY ++  +  ++ ++  G
Sbjct: 207 ISAMAEIKRIPFDLPEAENELGAGFHTEYSGMRFGLFFLGEYVNMQVLGGLVAVLFLG 264


>UniRef50_Q4FU58 Cluster: NADH-quinone oxidoreductase subunit H;
           n=74; cellular organisms|Rep: NADH-quinone
           oxidoreductase subunit H - Psychrobacter arcticum
          Length = 347

 Score =  126 bits (305), Expect = 4e-28
 Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A + + ER++L   Q R GPN+VG  G LQ  +D +K+F KE   PNF++ F +  +P  
Sbjct: 44  AMMIIYERRMLALWQDRYGPNRVGPFGSLQLVADMLKIFFKEDWTPNFTDKFMFTLAPAV 103

Query: 181 RFIXXXXXXXXIPYIYNL--ICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
                      IP    L    +++GILFF  +  + VY V+  GW+S + ++LLGGLRS
Sbjct: 104 AMFTALASFAIIPISPTLGVADWDIGILFFFAMAGIAVYAVLFGGWASANKFSLLGGLRS 163

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
            AQTISYEV                        Q                     A T+R
Sbjct: 164 AAQTISYEVFLGLSLMGVVALTGSFNLRAIVEAQADGWYIIPQFFGFLTFVVAGVAVTHR 223

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            PFD  E E+EL  G+++EY    F + F+ EY +++ I  ++  + +G
Sbjct: 224 HPFDQPEAEQELAEGYHVEYSGMKFGMFFIGEYVNVVLISALMTCLFFG 272


>UniRef50_P48901 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=3; Saccharomycetales|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Pichia canadensis (Yeast)
           (Hansenula wingei)
          Length = 351

 Score =  126 bits (304), Expect = 5e-28
 Identities = 76/229 (33%), Positives = 107/229 (46%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+LT+ ERK LGY+Q R GPN VG+ G L   +DA+KL  KE      S+      SP+ 
Sbjct: 21  AYLTVAERKTLGYMQRRVGPNIVGYYGQLMAIADALKLLLKEIIIVRESDKILIIISPII 80

Query: 181 RFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
                      IP+   +     N  +L+ L + S+GV+  ++ GWSSNS + LL  +RS
Sbjct: 81  ALCFALLSWAVIPFSPGIAIGDMNYSLLYILVIGSIGVFGTLLVGWSSNSKFTLLASIRS 140

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
            AQ ISYE+                    F   Q+                    AET+R
Sbjct: 141 TAQLISYELILTTNIIICILLNNTLNLNSFIDNQQTIWLILPLLPIGIIHYIARIAETSR 200

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            PFD  E E ELVSG   E     F L +L EY++I+ +  + +I+ +G
Sbjct: 201 PPFDNVEAESELVSGHMTELSASPFVLFYLQEYNNIVIMCFLNIILFFG 249


>UniRef50_Q5W905 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Lingula anatina|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Lingula unguis
          Length = 318

 Score =  126 bits (303), Expect = 7e-28
 Identities = 73/220 (33%), Positives = 103/220 (46%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF +L ER +L  +  R+ P  VG  G+LQP +D +KL+ K+      SN+  Y   P  
Sbjct: 29  AFYSLSERAILSLVAGRQSPGIVGLRGVLQPMADGMKLYMKDMIRLAQSNHLAYVLCPSV 88

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       P+ +      +  L FLC  SL    ++IAGW+SNS Y+L+  +RS+A
Sbjct: 89  SLGLSFAAWSVFPF-WGTYSLEVSALLFLCFISLSAIPIMIAGWASNSKYSLMASVRSLA 147

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q ISYEV                         +                    AETNR+P
Sbjct: 148 QAISYEVVLGLLLVFPLLFTHSLEMSSVAAPTQSIWVALAFPPLFGMWLACILAETNRSP 207

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
           FD  E E ELVSG+N+EY    FAL F++EYS++L   ++
Sbjct: 208 FDLVEAESELVSGYNVEYSGLHFALFFMSEYSNMLLFSVV 247


>UniRef50_Q7YH66 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=302; Platyhelminthes|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Taenia asiatica (Asian
           tapeworm)
          Length = 303

 Score =  125 bits (302), Expect = 9e-28
 Identities = 78/227 (34%), Positives = 103/227 (45%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF  L ERK+LGY Q RKGPNKVG IGLLQ FSD +KL  K + Y   S  +   F  V 
Sbjct: 21  AFFILGERKILGYSQFRKGPNKVGIIGLLQSFSDLLKLIVKFKNYGFQSRSWVGLFGVVL 80

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                          Y+    +L +L+FL +TS   Y ++  GW S ++Y+ L  +R   
Sbjct: 81  LVGLVIYYSFVYGGYYSYSFNSLSLLWFLVITSFCSYSILCTGWGSYNSYSFLSSIRCAF 140

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
            +IS+E                     F+L                        ETNRTP
Sbjct: 141 GSISFEACFMCIIIFSALCYCSYSLVDFFL--SGWLSVVIFPCLLILYIICILCETNRTP 198

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD+ E E ELVSGFN+EY    F  +F  EY  I     + +I+ +G
Sbjct: 199 FDYGEAESELVSGFNVEYSGIYFTCLFACEYIIIFIFSWLGMILMFG 245


>UniRef50_Q9RU94 Cluster: NADH-quinone oxidoreductase subunit H;
           n=9; Bacteria|Rep: NADH-quinone oxidoreductase subunit H
           - Deinococcus radiodurans
          Length = 397

 Score =  125 bits (302), Expect = 9e-28
 Identities = 83/243 (34%), Positives = 117/243 (48%), Gaps = 16/243 (6%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A++TL+ER++LG IQ+R GPN+VG +GLLQP +DAIK   KE      ++   Y  +P+ 
Sbjct: 27  AYMTLIERRLLGRIQLRPGPNRVGPMGLLQPLADAIKSIFKEDVTVTLADKLVYTLAPIL 86

Query: 181 RFIXXXXXXXXI------------PYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNS 324
                      I            P++YNL   + GIL  L LTS+GVY + + GW+S S
Sbjct: 87  AIGMALTAFGGIPAGPPGSLFGTDPWVYNL---DAGILALLALTSMGVYGIFLGGWASGS 143

Query: 325 NYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE----XXXXXXXXXXX 492
            Y +LG LRS AQ ISYE+                       +Q                
Sbjct: 144 KYPMLGSLRSSAQMISYELGMGLSVLGLLMLVGSTNFLDIVEWQAGPRGHGWLILFQVFA 203

Query: 493 XXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
                    AE NRTPFD  E E+ELV+G+  EY    +AL  +AEY +I+    ++  +
Sbjct: 204 FALFMVSSFAEVNRTPFDLPEAEQELVAGYLTEYSSIKWALFQMAEYVNIMTASALMSTL 263

Query: 673 KYG 681
            +G
Sbjct: 264 FFG 266


>UniRef50_A0LRI8 Cluster: NADH-quinone oxidoreductase subunit H;
           n=3; Bacteria|Rep: NADH-quinone oxidoreductase subunit H
           - Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
          Length = 451

 Score =  125 bits (302), Expect = 9e-28
 Identities = 77/237 (32%), Positives = 109/237 (45%), Gaps = 11/237 (4%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F+   ER+V+  +Q R GPN+VG  GLLQ  +D +KL  KE   P  ++   +  +PV  
Sbjct: 48  FMIWAERRVVARMQQRIGPNRVGPFGLLQSLADGLKLALKEDIVPTLADKAVFILAPVIS 107

Query: 184 FIXXXXXXXXIPY-----------IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNY 330
                     IP+              L    + +LF L ++SLGVY +++AGWSS S Y
Sbjct: 108 ATPAFLAFAVIPFGPTVSIAGHHTNLQLTDLPVAVLFVLAMSSLGVYGIVLAGWSSGSPY 167

Query: 331 ALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXX 510
            LLGG+RS AQ +SYE+                        Q                  
Sbjct: 168 PLLGGVRSAAQVVSYEIAMGLSFVGVFLYSGSLSTSDIVAAQAHRWGILWAGVSFAVYAI 227

Query: 511 XXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
               ETNR PFD  EGE E+V GF+ EY    FAL +LAEY +++ +  ++  +  G
Sbjct: 228 AMVGETNRAPFDLPEGETEIVGGFHTEYTSLKFALFYLAEYINMVTVSALMTTLFLG 284


>UniRef50_UPI00015BD35D Cluster: UPI00015BD35D related cluster; n=2;
           unknown|Rep: UPI00015BD35D UniRef100 entry - unknown
          Length = 348

 Score =  124 bits (300), Expect = 2e-27
 Identities = 83/241 (34%), Positives = 110/241 (45%), Gaps = 14/241 (5%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+LTL+ERKV  +IQ R GP  VG+ GLLQP +D IKL TKE   P+ +N   Y  + + 
Sbjct: 26  AYLTLVERKVAAHIQRRPGPMVVGWHGLLQPLADGIKLLTKEDILPSSANQVLYNLAIIM 85

Query: 181 RFIXXXXXXXXIPYIYNLICF-----------NLGILFFLCLTSLGVYIVIIAGWSSNSN 327
             +        +P+   +  F           N+GI+      SL VY V ++GW+SNS 
Sbjct: 86  ALVPASLVFAVVPFGPEIHVFGYDIKPILTDVNIGIIMAFAFGSLAVYGVALSGWASNSK 145

Query: 328 YALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQ--EXXXXXXXXXXXXXX 501
           YAL+G LR     ISYEV                  Y   + Q  +              
Sbjct: 146 YALIGALRKAGIIISYEVVITFAALGPIMLAKSLSTYDIVMAQIHQKVWYIFLQPISFVV 205

Query: 502 XXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAE-YSSILFIRMILVIIKY 678
                 AET R PFD  E E ELV+GF +EY    F L  L E Y  +L +  IL ++  
Sbjct: 206 FVFALLAETGRVPFDIQEAEAELVTGFTVEYGGMKFGLFPLVEWYVEVLSLSSILTVLYL 265

Query: 679 G 681
           G
Sbjct: 266 G 266


>UniRef50_Q9EV66 Cluster: NADH-quinone oxidoreductase subunit H 2;
           n=4; Proteobacteria|Rep: NADH-quinone oxidoreductase
           subunit H 2 - Rhizobium meliloti (Sinorhizobium
           meliloti)
          Length = 328

 Score =  124 bits (298), Expect = 3e-27
 Identities = 79/236 (33%), Positives = 112/236 (47%), Gaps = 11/236 (4%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRF 186
           LT LERK+ G++Q R GP +VG+ GLLQP +D IKL TKE   P  ++ F +  +P+   
Sbjct: 28  LTWLERKIAGHMQQRMGPMRVGWHGLLQPVADGIKLLTKEDHIPAEADRFLFKLAPILAL 87

Query: 187 IXXXXXXXXIPY------IYNLIC-----FNLGILFFLCLTSLGVYIVIIAGWSSNSNYA 333
                    IP+      + N I       N+ +LF   +  L VY VI  GW++NS YA
Sbjct: 88  APPFVVFAAIPFGESVSVLGNEITLYISNLNVALLFVFAVIGLEVYGVIFGGWAANSKYA 147

Query: 334 LLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXX 513
           +LG LR+ AQ ISYE+                        Q                   
Sbjct: 148 VLGSLRTCAQMISYEIPMGFAVIGVVMLAQSMSLLDIVRAQTDVWNVVYQPIGFFVFFVA 207

Query: 514 XXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
             AE  R PFD AE E +L +GF+ EY    FAL  ++EY  ++ + ++ VI+ +G
Sbjct: 208 GLAEAQRIPFDLAEAEGDLGAGFHTEYSGIRFALFMVSEYVVMVLVSVLTVILFFG 263


>UniRef50_Q6TY88 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Xiphinema americanum|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Xiphinema americanum
          Length = 289

 Score =  122 bits (294), Expect = 8e-27
 Identities = 82/227 (36%), Positives = 108/227 (47%), Gaps = 1/227 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK+LG+ QIR GPNK+ F GLLQP  D +KL TK    P  +     +  P+ 
Sbjct: 20  AFFTLLERKLLGFSQIRVGPNKLAFSGLLQPVMDGLKLLTKNMYMPVITQ-MLLFIGPII 78

Query: 181 RF-IXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
            F +        +P+  N +     +L FL L     Y V+I GW   S ++ LG LR++
Sbjct: 79  SFMVFMIFWVLVLPWNGNFMFRCSALLMFLML-GFSAYSVVIMGWGITSMFSKLGSLRAM 137

Query: 358 AQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRT 537
            Q++S+EV                    F    E                     E+NR 
Sbjct: 138 LQSLSFEVSLILAFFMTLIHMNSVNLSNFLTCFE------PSITWVFMWIILCLMESNRA 191

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKY 678
           PFD  EGE EL+SGFNIE     F L+FL+EY  ILF   +LV I +
Sbjct: 192 PFDLLEGESELISGFNIEMSSVLFVLVFLSEY-GILFCLGMLVSIPF 237


>UniRef50_Q1IS58 Cluster: NADH-quinone oxidoreductase subunit H 1;
           n=7; cellular organisms|Rep: NADH-quinone oxidoreductase
           subunit H 1 - Acidobacteria bacterium (strain Ellin345)
          Length = 426

 Score =  122 bits (293), Expect = 1e-26
 Identities = 61/127 (48%), Positives = 86/127 (67%), Gaps = 2/127 (1%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRF 186
           +T LERKVL ++QIR GP +VG  GLLQP +DA+KL  KE   P+ ++ F ++ +PV   
Sbjct: 42  MTYLERKVLAHMQIRLGPMRVGPHGLLQPIADALKLLIKEDIVPDGADKFLFWMAPVTVM 101

Query: 187 IXXXXXXXXIPY--IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
           +        IP+   + +   N+G+LF + ++SLGV  V++AGWSSNS YAL+GGLRS A
Sbjct: 102 MTAFTTYLVIPFGRSHAVTDMNIGVLFMIGISSLGVLAVVMAGWSSNSKYALMGGLRSAA 161

Query: 361 QTISYEV 381
           Q +SYEV
Sbjct: 162 QMVSYEV 168



 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AETNR PFD  E E EL +GF+ EY    ++L FL EY +++ +  I V +  G
Sbjct: 227 AETNRAPFDLPEAESELTAGFHTEYSGFRWSLFFLGEYVAMIAVSSIAVTLWLG 280


>UniRef50_Q81K04 Cluster: NADH-quinone oxidoreductase subunit H;
           n=10; Bacillus cereus group|Rep: NADH-quinone
           oxidoreductase subunit H - Bacillus anthracis
          Length = 333

 Score =  121 bits (292), Expect = 1e-26
 Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 3/226 (1%)
 Frame = +1

Query: 13  LLERKVLGYIQIRKGPNKVGF-IGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFI 189
           L ERKV+G++Q R GPN+VG   GLLQ  +D +KL  KE + P  ++   +  +PV  F 
Sbjct: 38  LAERKVMGFMQGRIGPNQVGGRFGLLQTVADVLKLLLKEDSIPKAADKPLFILAPVIAFA 97

Query: 190 XXXXXXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQ 363
                   IP+   +      +G+L+++ ++ +    V+  GW+SN+ Y+LLGG+R+ AQ
Sbjct: 98  PAFMVLAVIPFTDKFQFADIGVGLLYYIAVSGITTIGVVTGGWASNNKYSLLGGMRAAAQ 157

Query: 364 TISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPF 543
            ISYE+                        QE                    AE NRTPF
Sbjct: 158 MISYEIPLVMSVIGIVLLAGSLNLNEIVAAQENVWYIFVQPIGFVVFLIAAVAELNRTPF 217

Query: 544 DFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           D  E E ELVSG++ EY    +A   L+EY     +  ++ ++  G
Sbjct: 218 DLPEAESELVSGYHTEYSGFRWAFFMLSEYVYFFGMASLITVLFLG 263


>UniRef50_Q5YWD4 Cluster: NADH-quinone oxidoreductase subunits H/I;
           n=65; Bacteria|Rep: NADH-quinone oxidoreductase subunits
           H/I - Nocardia farcinica
          Length = 597

 Score =  121 bits (291), Expect = 2e-26
 Identities = 77/218 (35%), Positives = 98/218 (44%), Gaps = 11/218 (5%)
 Frame = +1

Query: 13  LLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           L ERKV+  +Q+R GPN+VG  G LQ  +D +K+  KE   P   +   Y  +PV   I 
Sbjct: 35  LAERKVVARMQMRVGPNRVGPFGSLQSIADGVKMAFKEDLVPAIVDKPIYLLAPVVSVIP 94

Query: 193 XXXXXXXIPY-----------IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALL 339
                  IP               L    +G+L+ L +TS+GVY +++AGW+S S Y LL
Sbjct: 95  AFMAFAVIPLGGEVSVAGNTTALQLTDMPVGVLYILAITSIGVYGIVLAGWASGSTYPLL 154

Query: 340 GGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXX 519
           GGLRS AQ ISYE+                        Q                     
Sbjct: 155 GGLRSTAQVISYEIAMALCFAAVFLHAGTMATSGIVGAQHPTWFVFLLLPSFLIYCVSMV 214

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEY 633
            ETNR PFD  E E ELV GF+ EY    FA+  LAEY
Sbjct: 215 GETNRAPFDLPEAEGELVGGFHTEYSSLKFAMFMLAEY 252


>UniRef50_Q9T9L2 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Dicyema misakiense|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Dicyema misakiense
          Length = 271

 Score =  120 bits (290), Expect = 2e-26
 Identities = 80/226 (35%), Positives = 110/226 (48%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFLTLLERKV+GYI  R GPNK+  IG+LQP  D +KLF K               S + 
Sbjct: 8   AFLTLLERKVMGYIHGRVGPNKILLIGVLQPIVDGVKLFLKSHMIS--VKVLPSVLSLIV 65

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             +          Y+         +L +L + SL V+ ++IA WSS S+Y +L  LR VA
Sbjct: 66  PLLLLCVLDVNSSYM---------LLMYLAVLSLSVWPLLIASWSSYSSYPVLASLRIVA 116

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q+ISYEV                  +                           +E +RTP
Sbjct: 117 QSISYEVVLYLIFIPLVVLSVSWSGF-----APTYSCGIYCVSFVFLGVIVGLSEMHRTP 171

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKY 678
           FDFAEGE ELVSG+N E+    F L+FLAEY ++L + ++L ++ +
Sbjct: 172 FDFAEGESELVSGYNTEFSSVSFTLLFLAEYLALLVMCVLLSVVMF 217


>UniRef50_A6H1Q6 Cluster: NADH-quinone oxidoreductase subunit H;
           n=4; Bacteroidetes|Rep: NADH-quinone oxidoreductase
           subunit H - Flavobacterium psychrophilum (strain
           JIP02/86 / ATCC 49511)
          Length = 343

 Score =  120 bits (290), Expect = 2e-26
 Identities = 75/238 (31%), Positives = 107/238 (44%), Gaps = 12/238 (5%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           + T  ERKV  ++Q R GPN+ G+ GLLQP +D +KLF+KE   PN  N F +   P   
Sbjct: 26  YSTWAERKVAAFLQDRVGPNRAGWGGLLQPLADGLKLFSKEEFEPNTPNKFLFVVGPAIA 85

Query: 184 FIXXXXXXXXIPYIYNLICFNLGI-----------LFFLCLTSLGVYIVIIAGWSSNSNY 330
                     IP+   L  F   I           L+   + S+GVY ++I GW+SN+ +
Sbjct: 86  MSTALMTSAVIPWGDKLHLFGRDILLQATDIDNALLYIFAVVSVGVYGIMIGGWASNNKF 145

Query: 331 ALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-XXXXXXXXXXXXXXXX 507
           +L+G +R+ +Q +SYEV                        Q                  
Sbjct: 146 SLMGAVRAASQMVSYEVAMGLSMIALLMMTGTLSLKEISAQQSGMNWNVFYQPVSFLIFL 205

Query: 508 XXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
               AETNRTPFD AE E EL+ G++ EY          AEY+++     IL I+ +G
Sbjct: 206 ICAFAETNRTPFDLAECESELIGGYHTEYSSMKMGFYLFAEYANMFISSAILAILFFG 263


>UniRef50_Q0Z876 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=2; Mermithidae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Agamermis sp. BH-2006
          Length = 310

 Score =  120 bits (289), Expect = 3e-26
 Identities = 76/226 (33%), Positives = 106/226 (46%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TL ERK L Y Q+R GPNK+ F GL QPF D +KLF K       ++Y  Y      
Sbjct: 34  AFFTLTERKFLSYSQLRLGPNKMFFNGLFQPFLDGVKLFKKNSLINLKNHYILYKIMSFM 93

Query: 181 RFIXXXXXXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             +        IP+    N I      LF + +  +  Y++++ GWSS +NY+L+GG RS
Sbjct: 94  ILLVSLIMWIMIPFSSWSNKIMLP---LFIILMFGISSYMMLLLGWSSMNNYSLMGGSRS 150

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
           +AQ +S+E+                                               E +R
Sbjct: 151 LAQVLSFEMLITLLVLITFVLKSSMSLKIL-----DYKSPMLFFFILICFSISIILEAHR 205

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
            P D AEGE ELVSG+N E+    F LIFL+EYSS++ + M+  +I
Sbjct: 206 APLDLAEGESELVSGYNTEFSSLYFILIFLSEYSSLILMCMLFFVI 251


>UniRef50_Q1K3R5 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Desulfuromonas acetoxidans DSM 684|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Desulfuromonas acetoxidans DSM 684
          Length = 329

 Score =  120 bits (288), Expect = 4e-26
 Identities = 70/225 (31%), Positives = 103/225 (45%), Gaps = 3/225 (1%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           +ERK+ G+ Q R GP +VGF G+LQ   D  KL  K+   P  ++   +  +P+  F+  
Sbjct: 35  MERKLAGHFQRRPGPMEVGFHGILQLLVDGFKLMGKQLVVPAQADKKLFILAPMLSFVPV 94

Query: 196 XXXXXXIPYIYNLICFNL--GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTI 369
                 IP+   +  F+L  G+LF L + S+ V  V++ GW SN+ Y+L G  RSVAQ +
Sbjct: 95  FLPLLVIPFSDKIQAFDLDVGLLFILAVASINVLAVLVGGWGSNNKYSLFGAFRSVAQNV 154

Query: 370 SYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-XXXXXXXXXXXXXXXXXXXXAETNRTPFD 546
           +YE+                        Q                      AETNR PFD
Sbjct: 155 AYEIPMLIALLSVVFVTNTFSLKGIVAAQSGGSWFLFFQPLAFLIYIICMVAETNRAPFD 214

Query: 547 FAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
             E E EL +GF+ EY    F+L  +AEY+++     I  +   G
Sbjct: 215 LPEAESELTAGFHTEYSGMSFSLFMMAEYTNMFIACSIATVFFLG 259


>UniRef50_Q1HBD8 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Thaumamermis cosgrovei|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Thaumamermis cosgrovei
          Length = 293

 Score =  120 bits (288), Expect = 4e-26
 Identities = 78/226 (34%), Positives = 111/226 (49%), Gaps = 2/226 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK LG  Q+R GPNKV F G +QP  D IKL  K+    N   Y   YF   F
Sbjct: 25  AFFTLLERKFLGSTQLRFGPNKVSFWGWIQPILDGIKLL-KKTNILNLKIYTTIYFFMSF 83

Query: 181 RFIXXXXXXXXIP--YIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             +        +   Y++NL    L +++ L +  L  +++++ GWSS S +ALLG  RS
Sbjct: 84  AILILALLIWAVMPFYLWNLKM--LVLMWILMVLGLSAFMILMIGWSSLSKFALLGSNRS 141

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
           ++Q +S+EV                  Y  +L                        E  R
Sbjct: 142 ISQVLSFEVN-FTMLIFLPFVMKCSMTYASFLSMS------LNFLTILLTGLTLVMEVQR 194

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
            P D +EGE ELVSG+N EY    F  IFLAEYS+++ + M+++++
Sbjct: 195 APADLSEGESELVSGYNTEYSSVLFTSIFLAEYSNMMSLNMLMLVL 240


>UniRef50_Q5DKX5 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=3; Pseudococcidae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Maconellicoccus hirsutus (hibiscus mealybug)
          Length = 306

 Score =  119 bits (287), Expect = 6e-26
 Identities = 72/222 (32%), Positives = 96/222 (43%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F  LLERKVLGY+  R GPNK+ F GL Q   D +KL  KE ++    N+F Y F   F 
Sbjct: 18  FFILLERKVLGYLNNRLGPNKILFKGLFQFLMDLVKLIFKENSFMILMNFFMYNFMIFFF 77

Query: 184 FIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQ 363
           FI        +PY+ NLI     IL  L +    + I++   WS NS Y+ +  +R   Q
Sbjct: 78  FIISFFIWLILPYLINLINLGFMILIMLMIMVNKILILMNLIWSINSIYSTISLIRLFIQ 137

Query: 364 TISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPF 543
             S+E+                                               E NR PF
Sbjct: 138 NFSFEILFMMILFFYMFLYNNLNMLMIMKMVYLNKMIYFSLLIFYFWLISIMVELNRIPF 197

Query: 544 DFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVI 669
           DF E E EL+SG N+E+    F   FL EY  ++F  +I +I
Sbjct: 198 DFLESESELISGMNLEFSSLNFMFFFLIEYLDLIFFSLITLI 239


>UniRef50_O79868 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=2; Chlamydomonadales|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Chlorogonium elongatum
          Length = 296

 Score =  119 bits (286), Expect = 8e-26
 Identities = 79/228 (34%), Positives = 109/228 (47%), Gaps = 1/228 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TL ER+V+  +Q R GPN  GF G+LQ   D  KL  KE   P  S    +  +P+ 
Sbjct: 18  AFFTLAERQVMASMQRRVGPNVSGFSGVLQAIYDGAKLGVKEPILPELSASGAFTAAPMI 77

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            FI        + +I +     L ++    L+SLGVY V++AGW+SNS YA LG LRSVA
Sbjct: 78  GFIISQISFCGL-FISDAAFQGLVLM---ALSSLGVYGVMLAGWASNSKYAFLGCLRSVA 133

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-XXXXXXXXXXXXXXXXXXXXAETNRT 537
             +SYE+                       + +                     AET R 
Sbjct: 134 LMVSYELGFGAVLLSISLFLVDNSGMKSLNFGDASTNISFALLPLFFIFLVCILAETKRV 193

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           PFD  E E ELV+G+N+EY   GFAL F+ EY+S+  + ++  +   G
Sbjct: 194 PFDLPEAEAELVAGYNVEYSSLGFALFFIGEYASMAVMSILASVYFLG 241


>UniRef50_Q1IS40 Cluster: NADH-quinone oxidoreductase subunit H 2;
           n=9; Bacteria|Rep: NADH-quinone oxidoreductase subunit H
           2 - Acidobacteria bacterium (strain Ellin345)
          Length = 354

 Score =  118 bits (285), Expect = 1e-25
 Identities = 82/253 (32%), Positives = 114/253 (45%), Gaps = 26/253 (10%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+   LERKV+G +Q R GP +VG  GLLQP +D +K   KE   P   N   Y  +P+ 
Sbjct: 27  AYTVWLERKVVGRMQNRWGPTRVGPFGLLQPLADGLKFILKEDLLPPHVNKPLYILAPML 86

Query: 181 RFIXXXXXXXXIPYIYNL---------------------ICFNLGILFFLCLTSLGVYIV 297
                      +P+   L                     +  N+G+L  L +TS+GVY +
Sbjct: 87  AVAMALLSISIVPFGGTLTIGHITTPLQITGIMGANGQPVDINIGLLIILGVTSIGVYGI 146

Query: 298 IIAGWSSNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-----X 462
            +AGWSSNS Y+LLG LR+ AQ +SYEV                        Q+      
Sbjct: 147 ALAGWSSNSKYSLLGSLRASAQMVSYEVSLGLSLVGVLLLSGSFSLREIVRLQQGGFWNW 206

Query: 463 XXXXXXXXXXXXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSI 642
                              AETNR PFD  E E ELV+G++ EY    FA+ F+AEY+++
Sbjct: 207 NIFGGFQFIAFFIYLTSAYAETNRIPFDLPEAETELVAGYHTEYSSMKFAMFFMAEYANM 266

Query: 643 LFIRMILVIIKYG 681
           + +  I  I+  G
Sbjct: 267 VTVACIASILFLG 279


>UniRef50_A3THI6 Cluster: NADH dehydrogenase subunit H; n=2;
           cellular organisms|Rep: NADH dehydrogenase subunit H -
           Janibacter sp. HTCC2649
          Length = 487

 Score =  117 bits (282), Expect = 2e-25
 Identities = 74/232 (31%), Positives = 103/232 (44%), Gaps = 11/232 (4%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXX 198
           ER+V+G +Q R GPN+ G  GLLQ  +D +K   KE   P  ++ F +  +P+       
Sbjct: 74  ERRVIGRMQQRPGPNRNGPFGLLQTLADGMKAMLKEDVTPAKADRFVFTLAPLITATMCF 133

Query: 199 XXXXXIPYIYNLICF-----------NLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGG 345
                IP    +  F           ++ +LF L +  +G+Y V++AGWSS S Y L+GG
Sbjct: 134 IGFAIIPLGGEVTMFGHTTPLQLADSSISVLFVLAIAGIGIYGVVLAGWSSGSPYPLMGG 193

Query: 346 LRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAE 525
           LRS AQ ISYE+                        Q                      E
Sbjct: 194 LRSSAQMISYEIAMGLSLVAVFLYSGSMSTSQIVSSQHSIWYIIPAFFSFFVYVITMVGE 253

Query: 526 TNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           TNR PFD AEGE EL  GF+ EY    FA+ FL EY ++  +  +   +  G
Sbjct: 254 TNRLPFDLAEGEGELTGGFHTEYGSMRFAMFFLGEYINMFTVSALATTMFLG 305


>UniRef50_A4G637 Cluster: NADH-quinone oxidoreductase subunit H;
           n=63; cellular organisms|Rep: NADH-quinone
           oxidoreductase subunit H - Herminiimonas arsenicoxydans
          Length = 357

 Score =  116 bits (279), Expect = 5e-25
 Identities = 59/129 (45%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+LTL ERKV+G++ +R GPN+ G  GLLQP +DA+KL  KE   P  S+   +  +P+ 
Sbjct: 41  AYLTLWERKVIGWMHVRHGPNRTGPAGLLQPIADALKLLLKEIVVPAKSSKALFVIAPIM 100

Query: 181 RFIXXXXXXXXIPY--IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             +        IP+     L   N G+LF + +TSL VY VI+AGW+SNS YA LG +R+
Sbjct: 101 TIMPALAAWAVIPFGPEAALANVNAGLLFVMAITSLEVYGVIVAGWASNSKYAFLGAMRA 160

Query: 355 VAQTISYEV 381
            AQ ISYE+
Sbjct: 161 SAQMISYEI 169



 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 25/54 (46%), Positives = 36/54 (66%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AE NR PFD  EGE E+V+G  +EY    FA+ FLAEY++++ I M+  ++  G
Sbjct: 227 AELNRHPFDVVEGESEIVAGHMVEYSGMSFAMFFLAEYANMILISMMATLMFLG 280


>UniRef50_A0RMD5 Cluster: NAD(P)H-quinone oxidoreductase chain 1
           (NAD(P)Hdehydrogenase I, chain 1); n=1; Campylobacter
           fetus subsp. fetus 82-40|Rep: NAD(P)H-quinone
           oxidoreductase chain 1 (NAD(P)Hdehydrogenase I, chain 1)
           - Campylobacter fetus subsp. fetus (strain 82-40)
          Length = 425

 Score =  116 bits (278), Expect = 7e-25
 Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 23/248 (9%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFIGL-----LQPFSDAIKLFTKERTYPN-FSNYFCYYF 168
           L LLERK+  +IQ R GPN+    G+     +Q  +DA+KL  KE   P+   + F +  
Sbjct: 25  LVLLERKISAFIQDRPGPNRANIAGIRLGGIIQALADALKLAIKEDFTPSSIRSKFLFTI 84

Query: 169 SPVFRFIXXXXXXXXIPY-----------IYNLICFNLGILFFLCLTSLGVYIVIIAGWS 315
           +P+  F+        IP+           +   I F+ G+L++L + SL +Y +++AG++
Sbjct: 85  APMILFLMSTLTIAVIPFSDYFTIDGVKHLMQGIPFDGGMLWYLGVASLSIYGIMLAGYA 144

Query: 316 SNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE------XXXXXX 477
           SN+ Y+LLG LR+ +  ISYE+                    F L Q+            
Sbjct: 145 SNNKYSLLGSLRAASGAISYEIPLGLAVVSMILTYDSINLNDFVLQQQGSFLGLPSWGIF 204

Query: 478 XXXXXXXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRM 657
                         AETNR PFD AEGE E+V+G+++EY    FA+ F+AEY ++  +  
Sbjct: 205 IQPLAAIIFIICAFAETNRAPFDLAEGESEIVAGYHLEYSAMSFAMFFMAEYIAMTAMSA 264

Query: 658 ILVIIKYG 681
           +++ I +G
Sbjct: 265 LIITIFFG 272


>UniRef50_Q8KEB9 Cluster: NADH-quinone oxidoreductase subunit H;
           n=10; Chlorobiaceae|Rep: NADH-quinone oxidoreductase
           subunit H - Chlorobium tepidum
          Length = 359

 Score =  115 bits (277), Expect = 9e-25
 Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 10/231 (4%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXX 198
           ERK+  ++Q R GP +VGF GLLQ  +D +KL  KE   P  ++ F +   P   F+   
Sbjct: 49  ERKISAFMQDRLGPMEVGFWGLLQTLADILKLLQKEDIVPTVADKFLFVIGPGILFVGSF 108

Query: 199 XXXXXIPYIYNLI--CFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTIS 372
                +P+    I    N+G+ + + + ++ V  ++ AGW SN+ +AL G +RSVAQ +S
Sbjct: 109 LAFAVLPFGPAFIGADLNVGLFYAVGIVAIEVVGILAAGWGSNNKWALYGAVRSVAQIVS 168

Query: 373 YEVRXXXXXXXXXXXXXXXXXYFFYLYQE--------XXXXXXXXXXXXXXXXXXXXAET 528
           YE+                      L Q                             AET
Sbjct: 169 YEIPASIALLCAAMLAGTLSMQQIILMQAGPNGFLHWFLFTNPIAWLPFLIYFISSLAET 228

Query: 529 NRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           NR PFD  E E ELV+G+  EY    FA+IFLAEY S+  +  I+ I   G
Sbjct: 229 NRAPFDIPEAESELVAGYFTEYSGMKFAVIFLAEYGSMFMVSAIISIAFLG 279


>UniRef50_Q67KP0 Cluster: NADH-quinone oxidoreductase subunit H 2;
           n=1; Symbiobacterium thermophilum|Rep: NADH-quinone
           oxidoreductase subunit H 2 - Symbiobacterium
           thermophilum
          Length = 394

 Score =  115 bits (276), Expect = 1e-24
 Identities = 71/213 (33%), Positives = 99/213 (46%), Gaps = 6/213 (2%)
 Frame = +1

Query: 13  LLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           +LERK+  ++Q R GP +VG  G +QP +D IKL+ KE   PN  + + Y  +P   F+ 
Sbjct: 38  MLERKLSAWMQNRVGPWRVGLWGWIQPVADLIKLWVKEYIRPNNVDKWLYLIAPFIGFVS 97

Query: 193 XXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQT 366
                  +P+   LI   F +GI+F   +    V    +AGW SN+ Y++LG +R  AQ 
Sbjct: 98  ANLVWLIVPFGDKLIATDFEIGIIFIAAVMGYDVIATFMAGWGSNNKYSMLGAMRGAAQL 157

Query: 367 ISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE----XXXXXXXXXXXXXXXXXXXXAETNR 534
           ISYEV                      L Q+                        AE NR
Sbjct: 158 ISYEVTMVMAVIGVVMMAGSLRLSDIVLAQQQRGFLGWFLFPQIIGFIVYLIASLAELNR 217

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEY 633
            PFD AE E+ELV+G + EY    +A+  LAEY
Sbjct: 218 APFDLAEAEQELVAGHHTEYSGFRWAMFMLAEY 250


>UniRef50_O67336 Cluster: NADH-quinone oxidoreductase subunit H;
           n=3; Aquificaceae|Rep: NADH-quinone oxidoreductase
           subunit H - Aquifex aeolicus
          Length = 336

 Score =  114 bits (274), Expect = 2e-24
 Identities = 80/241 (33%), Positives = 109/241 (45%), Gaps = 14/241 (5%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+LT  ERK+ G+IQ R GP  VG  G+LQP +DA+KL TKE   P  ++   YY + V 
Sbjct: 27  AYLTWFERKLAGHIQNRLGPTVVGKFGILQPLADALKLATKEVIIPRGADKPVYYAAVVM 86

Query: 181 RFIXXXXXXXXIP----------YIYNLIC-FNLGILFFLCLTSLGVYIVIIAGWSSNSN 327
             +        IP          YI  +I   N+ +L      SL VY  I +GW+SNS 
Sbjct: 87  ALVPSILLLTIIPFGPGFRVGNTYIEPIIADVNIALLLAFAFGSLSVYGTIFSGWASNSK 146

Query: 328 YALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFY--LYQEXXXXXXXXXXXXXX 501
           YA +G LR  A  I+YEV                          Q+              
Sbjct: 147 YAFIGSLRKAAVVIAYEVVLGFSVLGVILLAGTLSTVGIVEAQIQKGVWFIFYQPVAFIL 206

Query: 502 XXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAE-YSSILFIRMILVIIKY 678
                 AE+ R PFD  E E ELV+G+N+EY    F    LAE Y +++ +  I V++ +
Sbjct: 207 YLFCMLAESGRVPFDIQEAEAELVTGYNVEYGGMKFGAFPLAEWYVNVIALSAIAVVLFF 266

Query: 679 G 681
           G
Sbjct: 267 G 267


>UniRef50_P42032 Cluster: NADH-quinone oxidoreductase subunit H;
           n=6; Rhodobacterales|Rep: NADH-quinone oxidoreductase
           subunit H - Rhodobacter capsulatus (Rhodopseudomonas
           capsulata)
          Length = 345

 Score =  113 bits (273), Expect = 3e-24
 Identities = 72/228 (31%), Positives = 101/228 (44%), Gaps = 7/228 (3%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXX 198
           +RK+   +Q+RKGPN VG  GLLQ  +DA K   KE   P   +   Y+ +P+   +   
Sbjct: 37  DRKIWAAVQMRKGPNVVGAFGLLQSVADAAKYVFKEIVVPAGVDKPVYFLAPMLSLVLAL 96

Query: 199 XXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTIS 372
                +P+    +    N+ +LF   ++SL VY VI+ GW+SNS Y  LG LRS AQ IS
Sbjct: 97  LAWVVVPFNEGWVMADINVAVLFVFAVSSLEVYGVIMGGWASNSKYPFLGSLRSAAQMIS 156

Query: 373 YEVRXXXXXXXXXXXXXXXXXYFFYLYQE-----XXXXXXXXXXXXXXXXXXXXAETNRT 537
           YEV                        Q                          AETNR 
Sbjct: 157 YEVSMGLIIVGVIISTGSMNLSAIVEAQRGDFGLLNWYWLPHLPMVALFFISALAETNRP 216

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           PFD  E E ELV+GF +EY    + L    EY ++  +  +  ++ +G
Sbjct: 217 PFDLPEAESELVAGFMVEYSSTPYLLFMAGEYIAVWLMCALTSVLFFG 264


>UniRef50_Q8A0F7 Cluster: NADH-quinone oxidoreductase subunit H;
           n=7; Bacteroidetes|Rep: NADH-quinone oxidoreductase
           subunit H - Bacteroides thetaiotaomicron
          Length = 358

 Score =  112 bits (270), Expect = 7e-24
 Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 6/231 (2%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRF 186
           L  +ERKV G+ Q R GPN+VG  G +Q   D +K+ TKE   P  ++ F Y  +P    
Sbjct: 47  LIYMERKVCGFFQCRLGPNRVGKWGSIQVICDVLKMLTKEIFTPKDADRFLYNLAPFMVI 106

Query: 187 IXXXXXXXXIPYIYN--LICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
           I        IP+     ++ FN+G+ F L  +S+GV  +++AGW SN+ ++L+G +RS A
Sbjct: 107 IASFLTFACIPFNKGAEILNFNVGVFFLLAASSIGVVGILLAGWGSNNKFSLIGAMRSGA 166

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETN--- 531
           Q ISYE+                        Q                        N   
Sbjct: 167 QIISYELSVGMSIMTMVVLMGTMQFSEIVEGQADGWFIFKGHIPAVIAFIIYLIAGNAEC 226

Query: 532 -RTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            R PFD  E E EL +G++ EY    F   +LAEY ++  +  +   I  G
Sbjct: 227 NRGPFDLPEAESELTAGYHTEYSGMHFGFFYLAEYLNLFIVASVAATIFLG 277


>UniRef50_P11658 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=4; Eukaryota|Rep: NADH-ubiquinone oxidoreductase chain
           1 - Chlamydomonas reinhardtii
          Length = 292

 Score =  112 bits (270), Expect = 7e-24
 Identities = 79/228 (34%), Positives = 106/228 (46%), Gaps = 1/228 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A  TL ER V+  +Q R GP   G  GLLQPF D +KL  KE   P+ S+   +  SP+ 
Sbjct: 18  AMFTLAERTVMASMQRRFGPQVSGISGLLQPFWDGLKLGVKEPVLPDSSSAGAFAASPMI 77

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F+        I     +   +   L  + ++SL VY V++AGW+SNS YA LG LRSVA
Sbjct: 78  SFVLSQVAWVGIC----ISDASFQGLVIMAISSLAVYGVMLAGWASNSKYAFLGCLRSVA 133

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-XXXXXXXXXXXXXXXXXXXXAETNRT 537
             +SYE+                       + E                     AET R 
Sbjct: 134 LMVSYELSLGAALLSIGLFVTDGTGMKCLNFAEMPTTPQYAMLPLCLIFLVCILAETKRD 193

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           PFD  E   ELV+G+N+EY   GFAL F+AEY+++  +  I  I   G
Sbjct: 194 PFDLPEA--ELVAGYNVEYSSLGFALFFIAEYANMAVMSAIASIYFLG 239


>UniRef50_Q6N1Z4 Cluster: NADH-quinone oxidoreductase subunit H 2;
           n=12; Bacteria|Rep: NADH-quinone oxidoreductase subunit
           H 2 - Rhodopseudomonas palustris
          Length = 319

 Score =  112 bits (269), Expect = 9e-24
 Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 2/226 (0%)
 Frame = +1

Query: 10  TLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRF- 186
           T +ER++LG++Q R GPN+VG  G LQ  +D +K+ TKE   P  ++   Y  +P     
Sbjct: 26  TWVERRLLGFVQERYGPNRVGPFGSLQWVADTVKILTKEDRPPPGADKLLYILAPAVAAT 85

Query: 187 -IXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQ 363
            +        I   + L   ++G+LF L +  L  Y  ++  W+SN+ ++LLGG+R+ AQ
Sbjct: 86  PVLAGFGVVAIGDGWALSSVDVGLLFLLGMLGLTAYAAVLGAWASNNRFSLLGGMRAAAQ 145

Query: 364 TISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPF 543
            ++YEV                        Q                     A  +R PF
Sbjct: 146 MLAYEVFLGLSLMGVVMIAGSFSMAEIVEAQRGVWFVVLQPLGMALFTIAGIAAAHRLPF 205

Query: 544 DFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           D  E E +L++GF  EY    F L FL EY ++L +  + V + +G
Sbjct: 206 DLPESENDLIAGFITEYTGMSFGLFFLGEYLAVLLVSALAVTLFFG 251


>UniRef50_Q2IL15 Cluster: NADH-quinone oxidoreductase subunit H;
           n=3; Anaeromyxobacter|Rep: NADH-quinone oxidoreductase
           subunit H - Anaeromyxobacter dehalogenans (strain 2CP-C)
          Length = 413

 Score =  109 bits (263), Expect = 5e-23
 Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 8/229 (3%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXX 198
           E +V   +Q R G N+VG  G  Q  +DA+KL  KE   P  ++   +  +P F  +   
Sbjct: 51  EMRVSARMQSRIGYNRVGAAGFFQWIADAVKLLLKEDLIPADADRLLFRAAPYFVLVGFA 110

Query: 199 XXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTIS 372
                +P+  +LI    N+GI +   +T+L V  +++AGWSSNS +AL GG+RS AQ IS
Sbjct: 111 LVFVALPFGESLIAADLNVGIFYITAVTALVVVGILVAGWSSNSKWALFGGMRSAAQVIS 170

Query: 373 YE------VRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
           YE      V                     + ++                     AE NR
Sbjct: 171 YEIPAGLAVMVPVLMSGTLSMQGIIRSQGAWPWEWHALTNPFAMVAFAIFFVAQLAEGNR 230

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           TPFD  E E ELV+G+  EY    FAL FL E+ ++  +  I V + +G
Sbjct: 231 TPFDLPEAESELVAGYLSEYSAFRFALFFLVEFGNLWVMSAISVTLFFG 279


>UniRef50_Q9A6Y1 Cluster: NADH-quinone oxidoreductase subunit H;
           n=194; cellular organisms|Rep: NADH-quinone
           oxidoreductase subunit H - Caulobacter crescentus
           (Caulobacter vibrioides)
          Length = 356

 Score =  109 bits (261), Expect = 8e-23
 Identities = 56/129 (43%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AFL L +RK+   +Q+RKGPN VG  GLLQ F+D  K   KE   P  ++   +  +P+ 
Sbjct: 32  AFLLLADRKIWAGVQMRKGPNVVGPFGLLQSFADFFKFVLKEIVIPAGADKVVFILAPLI 91

Query: 181 RFIXXXXXXXXIPYIYNLICFNL--GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
             I        +P+    +  NL  GIL+ L ++SLGVY +I+ GW+SNS Y  LG LRS
Sbjct: 92  SLILAFVGWAVVPFAPGWVVSNLNVGILYLLAMSSLGVYGIIMGGWASNSKYPFLGALRS 151

Query: 355 VAQTISYEV 381
            AQ +SYEV
Sbjct: 152 AAQMVSYEV 160



 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AETNR PFD  E E ELV+G+ +EY    + L  +AEYS+I+ +  ++ ++ +G
Sbjct: 221 AETNRPPFDLPEAESELVAGYQVEYSSTPYLLFMVAEYSNIVLMCAMISVLFFG 274


>UniRef50_Q02CT6 Cluster: NADH-quinone oxidoreductase subunit H 1;
           n=1; Solibacter usitatus Ellin6076|Rep: NADH-quinone
           oxidoreductase subunit H 1 - Solibacter usitatus (strain
           Ellin6076)
          Length = 397

 Score =  109 bits (261), Expect = 8e-23
 Identities = 58/138 (42%), Positives = 81/138 (58%), Gaps = 11/138 (7%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+L  +ERKV+ +IQ+R GP +VG  GLLQP +D IKL TKE   P + N   Y  +P  
Sbjct: 27  AYLQWVERKVIAHIQVRPGPYRVGPHGLLQPLADVIKLITKEDLVPPYVNKPLYLAAPFL 86

Query: 181 RFIXXXXXXXXIPY-----------IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSN 327
                      IP+              +   N+G+LF L ++S+GVY + +AGW+SN+ 
Sbjct: 87  AITMALLSISVIPFGPVIHIGPVTTAMQMTDLNIGVLFILAVSSMGVYGIALAGWASNNK 146

Query: 328 YALLGGLRSVAQTISYEV 381
           Y+L+GGLRS AQ ISYE+
Sbjct: 147 YSLIGGLRSSAQMISYEL 164



 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 24/54 (44%), Positives = 35/54 (64%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AETNR PFD  E E ELV+GF+ EY    FA  F+AEY++++ +  +  ++  G
Sbjct: 218 AETNRVPFDLPEAENELVAGFHTEYSSMKFASFFMAEYANMITVSAMATLLFLG 271


>UniRef50_A3QRI2 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Microcotyle sebastis|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Microcotyle sebastis
          Length = 305

 Score =  108 bits (260), Expect = 1e-22
 Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 6/227 (2%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTK----ERTYPNFSNYFCYYF 168
           AF  LLERK+LG  Q R GP KV F+G+LQ F+D IKL  K      +Y        +Y+
Sbjct: 25  AFFVLLERKILGVCQARLGPQKVSFLGILQSFADFIKLLAKLGVSFGSYKGLKYRGLFYW 84

Query: 169 SPVFRFIXXXXXXXXIPYIYNLICFNLG--ILFFLCLTSLGVYIVIIAGWSSNSNYALLG 342
             V  F+           + N+  + +     + +  +SL  Y  I+ GW SNS Y+L G
Sbjct: 85  LGVIYFLLGATTFISFFILGNVSSWVVSNYTCWLIVFSSLSGYGFIMCGWGSNSKYSLYG 144

Query: 343 GLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXA 522
            +R+   +IS+E                    F  +                       +
Sbjct: 145 AIRASFSSISFE--GVLMCIVLSVGLYYGCYSFSVINNYEGSLSIGALTLYICSVIGVMS 202

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMIL 663
           E NR+PFDF+E E +LVSGFN +Y    FA++F +EYS ++F    L
Sbjct: 203 ECNRSPFDFSESESDLVSGFNTDYYGASFAILFASEYSIMIFFSWFL 249


>UniRef50_Q9B8Z5 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=11; Schistosomatidae|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Schistosoma japonicum (Blood
           fluke)
          Length = 296

 Score =  108 bits (259), Expect = 1e-22
 Identities = 72/227 (31%), Positives = 102/227 (44%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF  L ERKVLGYIQ+RKGPNKVG +GL Q F+D IKL +K +      + +  +F    
Sbjct: 21  AFFILSERKVLGYIQLRKGPNKVGLVGLFQSFADFIKLLSKYKIDGYTVHSWFSWFGCAI 80

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
             I               + +   +L+ L L++   Y +++ GW S + Y+L+  +R   
Sbjct: 81  LLICSSIGVFIYASDCGGLYYKFMMLYILILSTFTGYGLLMLGWGSWNKYSLISAVRVAF 140

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
            +IS+E                   Y  Y   +                    AE+NR+P
Sbjct: 141 ASISFEA------TFMCLVLVLGVIYNDYGNLDITYLIVIAPLNYFAWSVSLLAESNRSP 194

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD+ E E ELVSG N EY    F +IF  EY  +     I  I+ YG
Sbjct: 195 FDYGESESELVSGLNTEYSGLSFIVIFAFEYVMMFISSWITSIVFYG 241


>UniRef50_Q67P15 Cluster: NADH-quinone oxidoreductase subunit H 1;
           n=1; Symbiobacterium thermophilum|Rep: NADH-quinone
           oxidoreductase subunit H 1 - Symbiobacterium
           thermophilum
          Length = 328

 Score =  108 bits (259), Expect = 1e-22
 Identities = 69/216 (31%), Positives = 92/216 (42%), Gaps = 6/216 (2%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A   L  RK L Y   R GP KVG  G+LQP +D IK+  KE   P  ++   Y  +PV 
Sbjct: 26  AVFLLFMRKFLAYFAYRVGPVKVGPWGVLQPIADVIKMLFKEDIMPEQADPLIYRLAPVI 85

Query: 181 RFIXXXXXXXXIPYI------YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLG 342
            F         IP+        ++   N G+L  L + ++GVY   + GW+S + Y LLG
Sbjct: 86  AFFCALGVWVVIPWAPRGSWWSSMADPNAGVLVILAIAAMGVYGTALGGWASQNKYGLLG 145

Query: 343 GLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXA 522
            +R+ AQ ISYE+                  Y     Q                     A
Sbjct: 146 SMRATAQMISYELAMAMSLLGVILMTGSVSMYDIVDAQRNMINLFPQFLGFLVFYIASLA 205

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAE 630
           E   TPFD  E E ELV+G++ +Y    F L FL E
Sbjct: 206 EAGWTPFDLPESETELVAGYHTDYGGMRFGLFFLTE 241


>UniRef50_A4GJ19 Cluster: Putative respiratory-chain NADH
           dehydrogenase subunit H; n=1; uncultured Nitrospinaceae
           bacterium|Rep: Putative respiratory-chain NADH
           dehydrogenase subunit H - uncultured Nitrospinaceae
           bacterium
          Length = 358

 Score =  106 bits (255), Expect = 4e-22
 Identities = 76/243 (31%), Positives = 110/243 (45%), Gaps = 18/243 (7%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVG-----FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFS 171
           LT +ERK    +Q R G N+       F+GL    +DA+K+FTKE   P+ +N F +  S
Sbjct: 27  LTWVERKQSALMQDRIGANRADIMGFTFLGLFHIIADALKMFTKEDFIPDGANKFLHTMS 86

Query: 172 PVFRFIXXXXXXXXIPY---------IYNLICFNL--GILFFLCLTSLGVYIVIIAGWSS 318
           P+   +        +P+           NL+  +L  G+LF   + SL  Y  +IAGWSS
Sbjct: 87  PIVALVPALLTFAVVPFGGQYTLFDKEVNLVISDLDVGLLFVFAIASLATYGYVIAGWSS 146

Query: 319 NSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE--XXXXXXXXXXX 492
           N+N++LLG +R+ +Q ISYEV                        QE             
Sbjct: 147 NNNWSLLGSMRTASQMISYEVTMGLTIIGVLMVYGSMKLTEIGTIQENFWMWGIFLQPLG 206

Query: 493 XXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
                    AE  R PFD  E E ELV+G+  EY    F + F+AE+  ++ I  I+ I+
Sbjct: 207 FFMFLTASIAENKRIPFDAPEAESELVAGYFTEYSGLKFGMFFMAEFIEMVTIGAIMTIL 266

Query: 673 KYG 681
             G
Sbjct: 267 FLG 269


>UniRef50_P05513 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=16; Oligohymenophorea|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Paramecium tetraurelia
          Length = 261

 Score =  106 bits (255), Expect = 4e-22
 Identities = 69/229 (30%), Positives = 106/229 (46%), Gaps = 2/229 (0%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A +TLLERK+L  +Q R GPN VG+ G LQ  +DA+KLF K    P+ +N F +   P  
Sbjct: 17  ASITLLERKLLSLVQRRVGPNFVGYKGRLQYLADALKLFLKGVAIPSGANSFFFVAMPSL 76

Query: 181 RFIXXXXXXXXIPYIYNLICFNL--GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
                        +  +L  F++   I++   L+ L    V++ G+ S + Y+++ GLR+
Sbjct: 77  AGAVCYTFWMNSIWGPSLSMFDVEYNIVYASLLSILFGLCVMLTGYFSKNKYSVMAGLRA 136

Query: 355 VAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNR 534
               ++ E+                    F +YQE                     E NR
Sbjct: 137 AILMLNLEIFLGIVFLNVCFLVESFSFAAFAVYQEIFWLIFLFFFLLSNILLVFLLEVNR 196

Query: 535 TPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           TPFD AE E ELV+G+  EY    FAL +L EY  + F   ++ ++ +G
Sbjct: 197 TPFDLAEAESELVTGYTTEYGGFYFALFYLGEYFHLFFFSCLISVVFFG 245


>UniRef50_A1Z3A0 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=3; Romanomermis|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Romanomermis nielseni
          Length = 305

 Score =  105 bits (251), Expect = 1e-21
 Identities = 67/226 (29%), Positives = 105/226 (46%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+ TLLERK+L   Q+R GPNKV  +GL+QP  D +KL  K       S       + ++
Sbjct: 17  AYFTLLERKILSLSQMRLGPNKVLMLGLIQPILDGLKLMKKLLIMSLNSMVLFLMMNSMW 76

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F          P+ + L+  +   L+ L L     Y +++ GWSS + ++ LGG RS++
Sbjct: 77  MFSISMLLWFMFPF-FALMNKSSFFLWILLLFGFLSYFILMIGWSSMNKFSYLGGTRSLS 135

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q++S+E+                      L                        E  R+P
Sbjct: 136 QSLSFEILILLIMTPPFMISKCS------LLTLSNKFSLINFTMILVFFILSILECQRSP 189

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKY 678
            D +EGE ELVSG+N+E     F  +FL EY++++F+ M++  I Y
Sbjct: 190 MDLSEGESELVSGYNVELSSITFIFVFLGEYNTMIFMMMVMWFIYY 235


>UniRef50_Q1HBB1 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Strelkovimermis spiculatus|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Strelkovimermis spiculatus
          Length = 288

 Score =  103 bits (248), Expect = 3e-21
 Identities = 69/223 (30%), Positives = 103/223 (46%), Gaps = 1/223 (0%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F TLLERK+L   QIR GPNK   IG++QP  D +KL  K   +        +     F 
Sbjct: 16  FFTLLERKLLSLSQIRLGPNKTLIIGMIQPILDGLKLIKKGIIFNKKIYIIMFNMGAFFL 75

Query: 184 FIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQ 363
            +         P++   I  ++ + + L L  L  Y++ + GWSS S ++ LG +R++AQ
Sbjct: 76  LMLAIFLWMSFPFLM-WINKSMVMFWILLLLGLSTYMLFLIGWSSLSKFSFLGSMRALAQ 134

Query: 364 TISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPF 543
           TIS EV                  Y    Y +                     E +R P 
Sbjct: 135 TISLEV---LFSMLMFLGFSLMSKYNTTYYNQ--SNNLVQVTLTFYFFITILIEAHRAPM 189

Query: 544 DFAEGERELVSGFNIEYRRGGFALIFLAEYSS-ILFIRMILVI 669
           D +E E ELVSG+N E+    F +IFL+EYS+ I+F+ + + +
Sbjct: 190 DLSESESELVSGYNTEFSSVTFVMIFLSEYSNMIMFMGLAMFL 232


>UniRef50_Q8WAI8 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Alboglossiphonia heteroclita|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Alboglossiphonia heteroclita
          Length = 199

 Score =  103 bits (247), Expect = 4e-21
 Identities = 61/143 (42%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF TLLERK+LGY QIRKGPNKV FIGL QP +DA+KLF KE+     +N   +  +P+ 
Sbjct: 25  AFYTLLERKLLGYFQIRKGPNKVIFIGLPQPLADAMKLFLKEQMIQINANLSLFIGAPMM 84

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAG----------------- 309
                       P+         GI++FLC++++ VY   IAG                 
Sbjct: 85  SLFLALMLWCIYPHQNTSFWLQYGIMYFLCISAMNVYATFIAGSYEVSMSMILLSALILS 144

Query: 310 ---WSSNSNYALLGGLRSVAQTI 369
              WSSNS YALLG  R VAQT+
Sbjct: 145 TFMWSSNSKYALLGAYRGVAQTM 167


>UniRef50_Q9B893 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=30; Schistosoma|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Schistosoma malayensis
          Length = 297

 Score =  101 bits (241), Expect = 2e-20
 Identities = 68/227 (29%), Positives = 101/227 (44%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF  L ERKVL YIQ+RKGPNKVG  GLLQ F+D +KL  K +      + +  +     
Sbjct: 23  AFFILCERKVLSYIQLRKGPNKVGIAGLLQSFADFMKLVVKIKVNGYIVHSWFGWLGCFM 82

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F             ++ I ++  +L+ L + +   Y +++ GW+S + Y+LL  +R   
Sbjct: 83  LFFCSCMGVYIYSCSFSGIYYSFMMLYILMVFTFISYGLLMLGWASWNKYSLLSAVRVAF 142

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
            ++SYE+                    F L                       +E+NR P
Sbjct: 143 SSVSYEMILMCVLLVFGMLLGSYGNVSFCLMS------FITPLNYIVWIISMFSESNRAP 196

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           FD+ E E ELVSG N EY    F +I+  E   I  I  +  +I +G
Sbjct: 197 FDYGESESELVSGSNTEYSGVPFMIIYACESIMIYIISWLTSVIFWG 243


>UniRef50_Q0LPS5 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Herpetosiphon aurantiacus ATCC
           23779|Rep: Respiratory-chain NADH dehydrogenase, subunit
           1 - Herpetosiphon aurantiacus ATCC 23779
          Length = 413

 Score = 99.5 bits (237), Expect = 7e-20
 Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           FLT  ER+ + Y+Q R+GPN+VG  GLLQP S+AIK  TKE   P  ++   ++ +PV  
Sbjct: 37  FLTWYERRAISYMQDRRGPNRVGPQGLLQPISEAIKTMTKEDATPREADRIVHFLAPVVM 96

Query: 184 FIXXXXXXXXIPYIYNL-ICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                     IP+     +  N  +LF +    L    +++AGW SN+ +ALLGG+R VA
Sbjct: 97  LGATVLSFAVIPWGRMFPVDLNAAVLFVIATGGLHSIGMMMAGWGSNNKFALLGGMRGVA 156

Query: 361 QTISYEV 381
           Q ISYE+
Sbjct: 157 QLISYEI 163



 Score = 43.2 bits (97), Expect = 0.006
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AE  RTPFD  E + E+++G+  EY    FA+ +L+ Y S L +  I   +  G
Sbjct: 216 AEGERTPFDIPEADSEIIAGYMTEYSGMKFAVFYLSNYMSNLAVCFITATLYLG 269


>UniRef50_A7BBX4 Cluster: Putative uncharacterized protein; n=1;
           Actinomyces odontolyticus ATCC 17982|Rep: Putative
           uncharacterized protein - Actinomyces odontolyticus ATCC
           17982
          Length = 442

 Score = 99.5 bits (237), Expect = 7e-20
 Identities = 67/233 (28%), Positives = 97/233 (41%), Gaps = 11/233 (4%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           +ER+ LG +Q R GPN  G +GL Q F+DA KL  KE  +   +  F Y+ +P       
Sbjct: 45  VERRGLGRMQTRPGPNVAGPLGLFQAFADAGKLLFKEDMWTRRAERFLYFLAPAIAAFAA 104

Query: 196 XXXXXXIPYIYNLICFN-----------LGILFFLCLTSLGVYIVIIAGWSSNSNYALLG 342
                 IP   N+  F            +  L+ L + SLG+Y +++ GWS+ S   L G
Sbjct: 105 FSVYAVIPMGPNVKIFGHSTPLQLADMPVASLYILAIASLGLYGIVLGGWSTRSTLPLYG 164

Query: 343 GLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXA 522
            +RS AQ ISYE+                        Q                      
Sbjct: 165 AVRSSAQVISYELAMGLSLVSVFLMSGSMSTSQIVAAQGQFWWAFTLFPAFVIYCISAVG 224

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           E NR PFD  E E E+V+G   EY    F   +L+EY ++L +  +   + +G
Sbjct: 225 EVNRLPFDLPEAEGEIVAGHMTEYSSMKFGWYYLSEYVNMLNVSAVATTMFFG 277


>UniRef50_Q37165 Cluster: NAD(P)H-quinone oxidoreductase subunit 1,
           chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit
           1); n=178; cellular organisms|Rep: NAD(P)H-quinone
           oxidoreductase subunit 1, chloroplast (EC 1.6.5.-)
           (NAD(P)H dehydrogenase subunit 1) - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 360

 Score = 99.5 bits (237), Expect = 7e-20
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 6/228 (2%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           LER++   IQ R GP   G +G+LQ  +D  KL  KE   P+  N   +   P    I  
Sbjct: 50  LEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISI 109

Query: 196 XXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTI 369
                 IP+  +L+    N+GI  ++ ++S+    ++++G+ SN+ Y+ LGGLR+ AQ+I
Sbjct: 110 LLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSI 169

Query: 370 SYEVRXXXXXXXXXXXXXXXXXYFFY----LYQEXXXXXXXXXXXXXXXXXXXXAETNRT 537
           SYE+                           Y                      AE+ R 
Sbjct: 170 SYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAESERL 229

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           PFD  E E EL++G+  EY    F L ++A Y ++L   + + ++  G
Sbjct: 230 PFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLG 277


>UniRef50_Q8PU59 Cluster: F(420)H(2) oxidoreductase subunit H
           (F(420)H(2) dehydrogenase subunit H); n=2;
           Methanosarcina|Rep: F(420)H(2) oxidoreductase subunit H
           (F(420)H(2) dehydrogenase subunit H) - Methanosarcina
           mazei (Methanosarcina frisia)
          Length = 350

 Score = 99.5 bits (237), Expect = 7e-20
 Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 11/233 (4%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           +ERK+   IQ+R GP++VG  GLLQ  +DAIKLFTKE   P  ++ F Y  +PVF     
Sbjct: 41  IERKLSADIQLRYGPSRVGKFGLLQLVADAIKLFTKEDVRPGNADRFLYDNAPVFMLTSL 100

Query: 196 XXXXXXIPY--------IYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGG 345
                 IP         +Y L     ++ ILF   ++++ ++ + +A + SN+ Y+LLG 
Sbjct: 101 FLMLVAIPVGAVFIDGNLYPLAVTEMDISILFIEAVSAINIFGIFMAAYGSNNKYSLLGA 160

Query: 346 LRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQ-EXXXXXXXXXXXXXXXXXXXXA 522
            R+ A+ I YEV                        Q                      A
Sbjct: 161 FRNFARMIGYEVPLGIAIVSVAVMTGSLNIIDITSAQGSFVWNIFLQPIGFVVFFIALMA 220

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           +  R PFD  E E ELV+G+  EY    F L+F AEY  ++    ++ ++  G
Sbjct: 221 DLGRLPFDQNESEEELVAGWVTEYTGMRFGLVFFAEYMHMILGSFLVALLFLG 273


>UniRef50_Q6XZ11 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=2; Biomphalaria|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Biomphalaria straminea
          Length = 138

 Score = 97.9 bits (233), Expect = 2e-19
 Identities = 45/100 (45%), Positives = 62/100 (62%)
 Frame = +1

Query: 82  LLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPYIYNLICFNLGILF 261
           +LQPF+DA+KLF  E   P  SN   Y  +P+  F          P  Y +   + G+L 
Sbjct: 1   ILQPFADAVKLFLNEMILPMKSNKILYVVAPIMGFALALFLWVIYPSKYCVKFISFGLLI 60

Query: 262 FLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEV 381
           FLC++++ VY +++AGW+SNS YA LG LR+ AQTISYEV
Sbjct: 61  FLCISAINVYCILLAGWTSNSKYAFLGALRASAQTISYEV 100


>UniRef50_Q6G395 Cluster: NADH-quinone oxidoreductase subunit H;
           n=22; cellular organisms|Rep: NADH-quinone
           oxidoreductase subunit H - Bartonella henselae
           (Rochalimaea henselae)
          Length = 349

 Score = 97.9 bits (233), Expect = 2e-19
 Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+L   +RK+   +Q+R+GPN VG  GLLQ F+D IK   KE   P  +N   +  +P  
Sbjct: 32  AYLLYADRKIWAAVQLRRGPNVVGPWGLLQSFADLIKFVVKEPIIPAGANKGVFLLAPFV 91

Query: 181 RFIXXXXXXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
                      IP    + +   N+G+L+ L ++SL VY VI+ GW+SNS Y  LG LRS
Sbjct: 92  SATLALSTWAVIPVNEGWAVANINVGLLYILAISSLEVYGVIMGGWASNSKYPFLGALRS 151

Query: 355 VAQTISYEV 381
            AQ +SYEV
Sbjct: 152 AAQMVSYEV 160



 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 24/54 (44%), Positives = 32/54 (59%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AETNR PFD  E E ELV+G  +EY    + L FL EY +I+ +  +  I+  G
Sbjct: 221 AETNRPPFDLVEAESELVAGHMVEYSSTPYMLFFLGEYVAIVLMCALTTILFLG 274


>UniRef50_Q5DNB6 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Leptorhynchoides thecatus|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Leptorhynchoides thecatus
          Length = 305

 Score = 97.5 bits (232), Expect = 3e-19
 Identities = 68/221 (30%), Positives = 91/221 (41%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           +F TLLERKVLG  Q+RKGPNK    GL QP  D  KLF K     +      YYFSP+ 
Sbjct: 24  SFFTLLERKVLGLGQVRKGPNKGIIWGLFQPLLDGFKLFMKGINLLSLGGLLNYYFSPML 83

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                         ++         +  + ++SL +Y   ++G  S S Y +LG LR+ A
Sbjct: 84  GLSTVLFIWGLFSLVWGSGSMTHIFVIPILISSLLIYFFYLSGLFSGSVYGVLGSLRAAA 143

Query: 361 QTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
           Q +SYE                      ++                        E NRTP
Sbjct: 144 QFLSYECIVLLSFISMFGLLGSYLVPILFV-------PFLISIIFILLVFGVIMEVNRTP 196

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMIL 663
            DF EGE ELVSG   E     F+ + L EY  + F  + +
Sbjct: 197 VDFVEGESELVSGLVTEMGGLSFSCLVLGEYGMMCFYSVFI 237


>UniRef50_Q9PMA3 Cluster: NADH-quinone oxidoreductase subunit H;
           n=33; Epsilonproteobacteria|Rep: NADH-quinone
           oxidoreductase subunit H - Campylobacter jejuni
          Length = 332

 Score = 96.3 bits (229), Expect = 6e-19
 Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 14/238 (5%)
 Frame = +1

Query: 10  TLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFI 189
           T  ERKVL Y Q R GP+ VG  GL+Q  +D IKLFTKE   P+ S  F +  +P+   I
Sbjct: 30  TYAERKVLAYFQRRIGPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAI 89

Query: 190 XXXXXXXXIPYIYNLICF-----------NLGILFFLCLTSLGVYIVIIAGWSSNSNYAL 336
                   IP +     F           N+ +LF +  + L  Y V + G +SN+ +++
Sbjct: 90  CAFVSLAAIPMLPEFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSI 149

Query: 337 LGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXX 516
           LG  R +   ISYE                        YQ                    
Sbjct: 150 LGAARGLVSIISYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFI 209

Query: 517 XA---ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            A   ETNRTP    E + E+V+G+  EY    + + F+ EY+S++   +++ ++  G
Sbjct: 210 IALFIETNRTPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLG 267


>UniRef50_A6QCF5 Cluster: NADH-quinone oxidoreductase, chain H; n=2;
           Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
           chain H - Sulfurovum sp. (strain NBC37-1)
          Length = 343

 Score = 95.1 bits (226), Expect = 1e-18
 Identities = 71/247 (28%), Positives = 108/247 (43%), Gaps = 21/247 (8%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F T +ERKVL ++Q R GP  VG  GLLQ  +D IKLFTKE   P  +N   +  +P   
Sbjct: 34  FGTFIERKVLAFMQRRLGPMHVGPYGLLQLVADGIKLFTKEDIVPQNANSLIFKVAPSIT 93

Query: 184 FIXXXXXXXXIP-----------------YIYNLIC-FNLGILFFLCLTSLGVYIVIIAG 309
                     +P                 ++ ++    N+GILF L + + G+Y  ++AG
Sbjct: 94  AATAFIALAAVPVFPDFTIPEWIPVLGGVFVPSIAADLNIGILFVLGMMAAGLYGPLLAG 153

Query: 310 WSSNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQE---XXXXXXX 480
            +  + + ++G  R+  Q +SYEV                    F   Q           
Sbjct: 154 MAQANKWGIIGAARTAIQFLSYEVVTGLSILAPIMLVGSLSFVDFNNAQAGGISHWLIWQ 213

Query: 481 XXXXXXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMI 660
                        AETNRTPFD  E E E+VSG+  EY    + + F+ EY++++ I +I
Sbjct: 214 QPVAFVLFLIAGFAETNRTPFDLLEHEAEVVSGYATEYSGMRWGMFFIGEYANMITISII 273

Query: 661 LVIIKYG 681
             ++  G
Sbjct: 274 AAVVFLG 280


>UniRef50_A5UXK5 Cluster: NADH dehydrogenase; n=2; Roseiflexus|Rep:
           NADH dehydrogenase - Roseiflexus sp. RS-1
          Length = 452

 Score = 94.3 bits (224), Expect = 2e-18
 Identities = 46/123 (37%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXX 198
           ER+V+  +Q R GPN+VG  GLLQP +DA+K+FTKE   P  ++ + +  +PV       
Sbjct: 45  ERRVVARMQDRLGPNRVGPAGLLQPIADAVKMFTKEDIVPRNADRWVHLLAPVVSLAPVA 104

Query: 199 XXXXXIPY--IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTIS 372
                IP+   +  I  N+ +L+ + ++++    +++AGW SN+ +ALLG +R+VAQ +S
Sbjct: 105 MMLAVIPWGRGWEPIDLNVALLYIVAVSAVSGVGLMMAGWGSNNKFALLGAMRAVAQLVS 164

Query: 373 YEV 381
           YE+
Sbjct: 165 YEI 167



 Score = 40.3 bits (90), Expect = 0.042
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEY 633
           AE  RTPFD  E + E+V+G+  EY    FA  ++A+Y
Sbjct: 258 AEGERTPFDIPEADSEIVAGYMTEYSGMKFATFYIAQY 295


>UniRef50_Q11RU2 Cluster: NADH-quinone oxidoreductase subunit H 2;
           n=2; Flexibacteraceae|Rep: NADH-quinone oxidoreductase
           subunit H 2 - Cytophaga hutchinsonii (strain ATCC 33406
           / NCIMB 9469)
          Length = 365

 Score = 94.3 bits (224), Expect = 2e-18
 Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F+   ERKV  +IQ R GP +VG  G+LQ  +D IKL  KE      +N F +  +PV  
Sbjct: 17  FVVWAERKVAAFIQDRLGPMEVGPYGMLQTIADLIKLLQKEDIIATGANRFLFRLAPVLI 76

Query: 184 FIXXXXXXXXIPYIYNLI--CFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
           F         +P+  +LI    ++G+ F + + SL V  + +AGW+SN+ +++LG  R++
Sbjct: 77  FTAIFAGFATLPFAPDLIGSKADVGVFFMITIVSLDVVGIFLAGWASNNKFSILGAFRAI 136

Query: 358 AQTISYEV 381
           AQ ISYE+
Sbjct: 137 AQVISYEI 144



 Score = 62.5 bits (145), Expect = 9e-09
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AE NR PFD  EGE ELVSGF+ EY    FA++FLAEY+ +L +  + V++ +G
Sbjct: 223 AECNRAPFDIPEGESELVSGFHTEYTGFRFAILFLAEYAMMLLVAFLGVVLFFG 276


>UniRef50_Q3E1S2 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=2; Chloroflexus|Rep: Respiratory-chain NADH
           dehydrogenase, subunit 1 - Chloroflexus aurantiacus
           J-10-fl
          Length = 440

 Score = 93.9 bits (223), Expect = 3e-18
 Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F T  ER+V+  +Q R GPN+VG  G+ QP +D +K+FTKE   P  ++   ++ +P   
Sbjct: 44  FFTYYERRVIARMQDRIGPNRVGPEGIWQPIADGVKMFTKEDIVPAAADRIVHFLAPCVV 103

Query: 184 FIXXXXXXXXIPYIYNLICFNL--GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
                     +P+   +   +L  G+LFF  ++S+    +++AGW+SN+ ++LLG +R+V
Sbjct: 104 VAPTVLMFAVVPWGPGMTPVDLPTGLLFFFAVSSISAVGLMMAGWASNNKFSLLGAMRAV 163

Query: 358 AQTISYEV 381
           AQ +SYE+
Sbjct: 164 AQMVSYEI 171



 Score = 43.2 bits (97), Expect = 0.006
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AE  RTPFD  E + E+V+G+  EY    F L +LA+Y     +  I  II  G
Sbjct: 236 AEGERTPFDIPEADSEIVAGYMTEYSGMKFGLFYLAQYVLNFLLCAITAIIFLG 289


>UniRef50_Q7YCX1 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=33; Arion|Rep: NADH-ubiquinone oxidoreductase chain 1
           - Arion ater
          Length = 145

 Score = 93.9 bits (223), Expect = 3e-18
 Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = +1

Query: 73  FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPYIYNLICFNL- 249
           ++GLLQPF+DA+KLF KE   P  SN   +   PV  F         +    N+  + L 
Sbjct: 1   YLGLLQPFADALKLFLKETIKPQHSNSIMFTVVPVLGF-SLALMFWGMTSSSNISYYLLF 59

Query: 250 GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEV 381
            +L F C+TSL VY+V+++GW+SNS YA LG LR+ AQTISYE+
Sbjct: 60  SLLLFFCMTSLNVYVVLLSGWTSNSMYAFLGALRASAQTISYEI 103


>UniRef50_A7CXQ4 Cluster: NADH dehydrogenase; n=1; Opitutaceae
           bacterium TAV2|Rep: NADH dehydrogenase - Opitutaceae
           bacterium TAV2
          Length = 396

 Score = 93.5 bits (222), Expect = 4e-18
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A  T+ ERKVLG  Q R GPN+ G  G +QPF+DA+K  TKE   P  ++   ++ +P  
Sbjct: 47  ALFTVTERKVLGRFQNRYGPNRTGPFGYMQPFADAVKALTKEDLIPATADKLLHFLAPCC 106

Query: 181 RFIXXXXXXXXIPYIYNLICFNL--GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
                      IP   +L   NL  GIL+F    +     + +AGWSS++ Y+L+  +R+
Sbjct: 107 AVFFALLGFAVIPCGLHLTALNLDAGILYFFAAGAATELAIFMAGWSSHNKYSLISAMRA 166

Query: 355 VAQTISYEV 381
           +AQ IS+E+
Sbjct: 167 LAQLISFEL 175



 Score = 43.6 bits (98), Expect = 0.005
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEY 633
           AETNR PFD  E E E+++G   EY    +AL F+ EY
Sbjct: 232 AETNRCPFDLPEAESEIIAGHLTEYSGFKYALFFMGEY 269


>UniRef50_Q9T6M0 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Globodera pallida|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Globodera pallida
          Length = 287

 Score = 93.5 bits (222), Expect = 4e-18
 Identities = 66/208 (31%), Positives = 95/208 (45%), Gaps = 2/208 (0%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           FL + E  +LG+ Q+R  PNK  FIG LQ  SD +KLF KE  +      F ++F  + +
Sbjct: 19  FLVMSEHYLLGFSQLRVSPNKFFFIGYLQALSDGLKLFKKELIFLLGFLVFIFFFFSLSQ 78

Query: 184 FIXXXXXXXXIPYIYNLICFNL--GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
           F         + + + L C  L   I F + L  L  ++     + S S Y+LLG LR  
Sbjct: 79  FF-----LSLLFFSFFLFCLGLKFNIFFLMFLLGLITFLFFFLSYYSVSKYSLLGSLRLF 133

Query: 358 AQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRT 537
           +Q++S+++                  +F  L  E                     E NR+
Sbjct: 134 SQSVSFDL-------VYFFLLFMLVFFFQSLDLEVIFFFLFFILFFFFLLLLLVTEANRS 186

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIF 621
           PFDF+EGE ELVSG+N+E   GG   IF
Sbjct: 187 PFDFSEGESELVSGYNLEL--GGLVFIF 212


>UniRef50_Q7YCU4 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Deroceras sp. 60A-JQ-2003|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Deroceras sp. 60A-JQ-2003
          Length = 145

 Score = 93.5 bits (222), Expect = 4e-18
 Identities = 45/101 (44%), Positives = 61/101 (60%)
 Frame = +1

Query: 79  GLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPYIYNLICFNLGIL 258
           G+ QP +DA+KLF KE+     SN   +Y +PV  F+         P  + +     G+L
Sbjct: 3   GIFQPLADALKLFMKEKVNLVSSNSVVFYITPVIGFMLGLLIWFLYPSHWAINFVVWGVL 62

Query: 259 FFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEV 381
            F C++SL VYI ++AGW SNS YA LG +R+ AQTISYEV
Sbjct: 63  CFFCISSLNVYITMMAGWGSNSKYAFLGAIRAAAQTISYEV 103


>UniRef50_Q979M4 Cluster: NADH dehydrogenase I chain E; n=4;
           Thermoplasmatales|Rep: NADH dehydrogenase I chain E -
           Thermoplasma volcanium
          Length = 346

 Score = 91.1 bits (216), Expect = 2e-17
 Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 11/233 (4%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           L RK +  +Q+R GPN+VG  G LQ  +DAIKL  KE   P   + F Y  +P   FI  
Sbjct: 45  LFRKYMARLQLRYGPNRVGKFGSLQLIADAIKLVGKESILPKLRDDFAYKTAPYIVFIGL 104

Query: 196 XXXXXXIPY-----IYNLICFNLGILFFLCLTSLGVYIV--IIAGWSSNSNYALLGGLRS 354
                 IPY     I +L   +  +   L   ++ +  +  I+AG SS++ YALLG +R 
Sbjct: 105 VVGFILIPYGDFYWIGSLTITHSDVSLILFFGAIAMMPIGEILAGISSHNKYALLGAMRG 164

Query: 355 VAQTISYEV----RXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXA 522
           VA+ +S+EV                      +   +  +                    A
Sbjct: 165 VAKDVSFEVPMMLSAIALVMMDSAVNKTPLEFSSLVSTQFIPFGILQPLGLFVFMVAMIA 224

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            ++ TPFD +E + E+VSG++ EY    F L ++  + SI    +++ ++  G
Sbjct: 225 RSSYTPFDLSESDSEIVSGYSTEYSGMRFGLFYMGMFGSIFLGSLVISLLYLG 277


>UniRef50_Q8TQP1 Cluster: F(420)H(2) oxidoreductase subunit H
           (F(420)H(2) dehydrogenase subunit H); n=3;
           Methanosarcinales|Rep: F(420)H(2) oxidoreductase subunit
           H (F(420)H(2) dehydrogenase subunit H) - Methanosarcina
           acetivorans
          Length = 348

 Score = 89.4 bits (212), Expect = 7e-17
 Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 10/232 (4%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           LERK+   IQ R GP++VG  GLLQ  +DAIKLFTKE   P  ++   +  +P+F     
Sbjct: 40  LERKLSADIQFRYGPSRVGKFGLLQLVADAIKLFTKEDMRPRNADRLLFDNAPIFMMSSV 99

Query: 196 XXXXXXIP----------YIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGG 345
                 IP          Y   +   ++ +L+   ++++ ++ + +  + SN+ Y+LLG 
Sbjct: 100 FLMLVAIPVGAVFINGVEYPLAVTEMDISVLYIEAMSAITIFGIFMIAYGSNNKYSLLGA 159

Query: 346 LRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAE 525
            R+ A+ + YEV                        Q                     A+
Sbjct: 160 FRNFARMVGYEVPLGITVVSVAIMTGSLNIVEIASAQGLLWNIFLQPIGFIVFFIALMAD 219

Query: 526 TNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
             R PFD  E E ELV+G+  EY    F L F AEY  ++    ++ ++  G
Sbjct: 220 MGRLPFDQNESEEELVAGWITEYTGMRFGLGFFAEYIHMILGSFLVALLFLG 271


>UniRef50_Q6MGN3 Cluster: NADH-quinone oxidoreductase subunit H;
           n=1; Bdellovibrio bacteriovorus|Rep: NADH-quinone
           oxidoreductase subunit H - Bdellovibrio bacteriovorus
          Length = 385

 Score = 88.2 bits (209), Expect = 2e-16
 Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 21/146 (14%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRF 186
           L  LER+   +IQ R GPN+VG +GL+Q  +DA+K   KE   P  +  F YY +P+F  
Sbjct: 31  LVWLERRGSAFIQDRLGPNRVGPLGLVQLLADAVKFLNKENFMPQTAKPFLYYAAPIFAL 90

Query: 187 IXXXXXXXXI-------------------PYIYNLICFNL--GILFFLCLTSLGVYIVII 303
           I        I                   PY + +  +++  GI+F L ++SL  Y +++
Sbjct: 91  IPGAVAFSAIPLSSPIQVGTFEMFGSTWGPYTFLVQGYDIGVGIVFILGVSSLAAYTLLM 150

Query: 304 AGWSSNSNYALLGGLRSVAQTISYEV 381
           AGW S + Y L+G LR+ AQTISYE+
Sbjct: 151 AGWGSGNKYTLMGALRASAQTISYEL 176



 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 24/54 (44%), Positives = 34/54 (62%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AE+NR PFD AEGE ELV GF+ EY    F + F+ EY  ++    ++V+  +G
Sbjct: 240 AESNRLPFDLAEGESELVGGFHTEYGGFKFNMFFIGEYGHMMIASGLMVLFFFG 293


>UniRef50_Q6ANM8 Cluster: NADH-quinone oxidoreductase subunit H;
           n=3; Deltaproteobacteria|Rep: NADH-quinone
           oxidoreductase subunit H - Desulfotalea psychrophila
          Length = 333

 Score = 87.8 bits (208), Expect = 2e-16
 Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           A+L   ER+   +IQ R GP + G  GLLQP  D IKL TK+   P   +   +  +PV 
Sbjct: 24  AYLVWAERRGAAFIQRRLGPVENGPWGLLQPPVDGIKLMTKQLVIPGGVDKILFMVAPVL 83

Query: 181 RFIXXXXXXXXIPYIYNLICFN--LGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
                      IP+  N++  N  +G+L  L   S     +++AGWSS + Y+++  +R+
Sbjct: 84  AMFPALMSFVTIPFSENIVAHNMDIGLLVILAFASFAGLAILLAGWSSRNKYSMMAAIRA 143

Query: 355 VAQTISYEV 381
           V+QTI+YE+
Sbjct: 144 VSQTIAYEI 152



 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 25/54 (46%), Positives = 34/54 (62%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AETNR PFD  E E ELV+GF+ EY   GF L F+ EY++I+    +  ++  G
Sbjct: 211 AETNRAPFDLGEAESELVAGFHTEYSSMGFGLFFMGEYANIVIGACLTTLLFLG 264


>UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain
           49kDa; Respiratory-chain NADH dehydrogenase, subunit 1;
           n=2; core eudicotyledons|Rep: NADH-ubiquinone
           oxidoreductase, chain 49kDa; Respiratory-chain NADH
           dehydrogenase, subunit 1 - Medicago truncatula (Barrel
           medic)
          Length = 288

 Score = 85.8 bits (203), Expect = 9e-16
 Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           LER++   IQ R GP   G  G+LQ  +D  KL  KE   P+  +   +   P    I  
Sbjct: 150 LEREISAGIQQRIGPEYAGPFGILQALADGTKLLFKENLIPSRGDIRLFSIGPSISVISI 209

Query: 196 XXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTI 369
                 IP+ YN +   FN+G+  ++ ++S+    ++++G+ SN+ Y+ LGGLR+ AQ+I
Sbjct: 210 LISYSVIPFGYNFVLSDFNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSI 269

Query: 370 SYEV 381
           SYE+
Sbjct: 270 SYEI 273


>UniRef50_A7KJL0 Cluster: NADH dehydrogenase subunit 1; n=12;
           Dysdera|Rep: NADH dehydrogenase subunit 1 - Dysdera
           lancerotensis
          Length = 112

 Score = 82.6 bits (195), Expect = 8e-15
 Identities = 44/94 (46%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF T+LERK L YIQ RKGPNKV  +G+LQPFSDAIKLF K  T P+ SN       P  
Sbjct: 19  AFYTILERKFLSYIQTRKGPNKVSLLGILQPFSDAIKLFNKTMTLPSASNITMIVTFPTI 78

Query: 181 RFIXXXXXXXXIPYI-YNLICFNLGILFFLCLTS 279
            F         +P   +N+I  +L  L F  ++S
Sbjct: 79  TFFLSLILWPTLPLSHFNMIDSSLTSLIFFVISS 112


>UniRef50_A3ZL02 Cluster: NADH dehydrogenase I chain H; n=1;
           Blastopirellula marina DSM 3645|Rep: NADH dehydrogenase
           I chain H - Blastopirellula marina DSM 3645
          Length = 434

 Score = 78.2 bits (184), Expect = 2e-13
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGF-IGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           +ERK+ G IQ R GP + G   G LQ  +D IKL +KE   P  ++   +  +P      
Sbjct: 43  MERKIAGRIQDRLGPTRTGGKFGWLQTLADGIKLLSKEDLMPRDADPLLFKLAPYISLAA 102

Query: 193 XXXXXXXIPYIYNLICFNLGILFFLCLTSLG--VYIVIIAGWSSNSNYALLGGLRSVAQT 366
                  +P+    +   L I  F  +  LG  V+ VI+AG+ S S ++L GG+R  AQ 
Sbjct: 103 SFTAFLALPFASGWVGVRLNIALFFVIAVLGLEVFGVILAGYGSGSKWSLFGGMRQAAQV 162

Query: 367 ISYEV 381
           +SYEV
Sbjct: 163 VSYEV 167



 Score = 53.2 bits (122), Expect = 6e-06
 Identities = 25/54 (46%), Positives = 33/54 (61%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           A  NR PFD AE E ELVSGF  EY    ++L F+AEY S+  +  +  I+ +G
Sbjct: 220 ASVNRAPFDLAEAESELVSGFLTEYSGIRWSLFFMAEYGSMFLVSGLAAILFFG 273


>UniRef50_A1ALP6 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Pelobacter propionicus DSM 2379|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Pelobacter propionicus (strain DSM 2379)
          Length = 389

 Score = 68.9 bits (161), Expect(2) = 4e-13
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 7/161 (4%)
 Frame = +1

Query: 220 YIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEVRXXXXX 399
           Y+  +   + GIL  L ++ +G+   ++AGWSSN+ ++LLG  R+ +Q ISYEV      
Sbjct: 139 YVMQVARLDAGILVILAISGIGILGTMLAGWSSNNKFSLLGAARAASQMISYEVSMGLAL 198

Query: 400 XXXXXXXXXXXXYFFYLYQE-------XXXXXXXXXXXXXXXXXXXXAETNRTPFDFAEG 558
                           ++Q                            AE  R PFD  E 
Sbjct: 199 ISLVVTYGTLDLNDMVVWQSGLLFGVLPAWGIILQPLAFVLFLTACIAENKRVPFDLPEC 258

Query: 559 ERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           E ELVSG+  EY      +  L+E+  I+ +  +LV +  G
Sbjct: 259 ESELVSGYFTEYTAMKMGIFMLSEFIEIVVVSALLVTVFLG 299



 Score = 28.3 bits (60), Expect(2) = 4e-13
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +1

Query: 37  YIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXI 216
           Y++I     K+   GL+   +D  K+  KE   P   + FCY  +P             I
Sbjct: 47  YLRIPFTNVKIVAWGLIHGIADGSKMLLKENFTPTTYDRFCYNLAPWLALAPVLLVFSAI 106

Query: 217 PY 222
           P+
Sbjct: 107 PF 108


>UniRef50_Q6A6G5 Cluster: NADH-quinone oxidoreductase subunit H;
           n=1; Propionibacterium acnes|Rep: NADH-quinone
           oxidoreductase subunit H - Propionibacterium acnes
          Length = 440

 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 50/139 (35%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGP--NKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPV 177
           F    ER+VL  +Q R GP  N     G+ Q   D +KL  KE   P  ++   +  +PV
Sbjct: 31  FNVWFERRVLAKMQNRIGPIMNSAWAGGVFQAVGDGLKLIFKEMLTPKGADKIVFNLAPV 90

Query: 178 FRFIXXXXXXXXIPYIYNLICFN-----------LGILFFLCLTSLGVYIVIIAGWSSNS 324
              I        IP    +  F            + +LF L + S+G+Y V++AGWSS  
Sbjct: 91  IAGIACFASWSVIPLGGQVSMFGHTTRLQITDVPVAVLFILAVASIGIYGVVLAGWSSAG 150

Query: 325 NYALLGGLRSVAQTISYEV 381
            Y+LLG LRS AQ ISYEV
Sbjct: 151 TYSLLGSLRSSAQMISYEV 169



 Score = 43.6 bits (98), Expect = 0.005
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +1

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           E+NR PFD  E E ELVSG+  EY    + + FLAEY ++  +  +   +  G
Sbjct: 229 ESNRLPFDLPECESELVSGYITEYSGFPYGMYFLAEYINMATLSAVCTTLFLG 281


>UniRef50_A3E7R3 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=16; Coelomata|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Nyctalus leisleri (Leisler's bat)
          Length = 299

 Score = 74.1 bits (174), Expect = 3e-12
 Identities = 43/117 (36%), Positives = 52/117 (44%)
 Frame = +1

Query: 331 ALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXX 510
           AL+G L    QT  YEV                        QE                 
Sbjct: 128 ALIGALXXXXQTXXYEVTLAIIILSILLMNGSFTLSTLITTQEYTWLILPSWPLAMMWFI 187

Query: 511 XXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
              AETNR PFD  EGE ELVSGFN+EY  G FAL FLAEY++I+ +  + +I+  G
Sbjct: 188 STLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALTIILFLG 244



 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = +1

Query: 1  AFLTLLERKVLGYIQIRKGPNKVG 72
          AFLTLLERKVLGY+Q+RKGPN VG
Sbjct: 18 AFLTLLERKVLGYMQLRKGPNIVG 41


>UniRef50_Q70VA3 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Cotesia anisotae|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Cotesia anisotae
          Length = 129

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 34/79 (43%), Positives = 50/79 (63%)
 Frame = +1

Query: 145 SNYFCYYFSPVFRFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNS 324
           S+   Y  SP   F          P+  N + F+  +L+F  L S GVY +I+AGWSSNS
Sbjct: 1   SSXXXYXXSPSXXFXLIXMIWMIYPFXTNXLMFDYSVLYFXXLMSXGVYSLILAGWSSNS 60

Query: 325 NYALLGGLRSVAQTISYEV 381
           +++++G +RS+AQ+ISYEV
Sbjct: 61  SFSMIGSIRSIAQSISYEV 79


>UniRef50_Q9F2V9 Cluster: NADH dehydrogenase subunit NuoH2; n=5;
           Actinomycetales|Rep: NADH dehydrogenase subunit NuoH2 -
           Streptomyces coelicolor
          Length = 322

 Score = 72.9 bits (171), Expect = 6e-12
 Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 7/228 (3%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVG-FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           E KV+ ++Q R GP   G F G  Q  +D +K   KE   P  ++   +  +P    +  
Sbjct: 29  EHKVMAHMQGRLGPMYAGGFHGWAQLVADGVKFAQKEDVVPADADRRIFQLAPAVALLPY 88

Query: 196 XXXXXXIPY------IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
                 IP       +  ++  + G+ F L +  +GV   ++AGWSS + ++LLGGLR+ 
Sbjct: 89  LLVLLAIPVGPGEGAVGQVV--DAGVFFVLAVMGVGVLGSLMAGWSSANKFSLLGGLRTA 146

Query: 358 AQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRT 537
           AQ ++YE+                      L                       AE  R 
Sbjct: 147 AQLLAYEL-PMLLTAASVAMAAGTVSLVGILDAFEWWWLPWQIVGAIVFFVAGLAELQRP 205

Query: 538 PFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           PFD    + E++ G   EY    FAL  LAEY+ I+ +  +  ++  G
Sbjct: 206 PFDMPVADSEIIFGAYTEYTGLRFALFLLAEYAGIVVLCGLTTVLFLG 253


>UniRef50_Q5YBJ8 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Spathius sp. MS-2004|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Spathius sp. MS-2004
          Length = 132

 Score = 72.5 bits (170), Expect = 9e-12
 Identities = 32/73 (43%), Positives = 48/73 (65%)
 Frame = +1

Query: 163 YFSPVFRFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLG 342
           + +P+  F          P+ Y LI   L  L FL L S+G+Y ++I+GWSSNS++++LG
Sbjct: 18  FIAPLIMFTLIMSMWMIYPFFYQLINIPLNSLLFLSLMSMGIYGLMISGWSSNSSFSMLG 77

Query: 343 GLRSVAQTISYEV 381
            +RS+AQ+ISYEV
Sbjct: 78  SIRSIAQSISYEV 90


>UniRef50_A0RY69 Cluster: NADH-ubiquinone oxidoreductase, subunit H;
           n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
           subunit H - Cenarchaeum symbiosum
          Length = 432

 Score = 72.5 bits (170), Expect = 9e-12
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 3/225 (1%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFI-GLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           +ERK+L  +Q+R GP   G + GLLQ   D +KL +KE   P  ++   +  +P+     
Sbjct: 102 VERKMLAKLQLRVGPFYCGKVEGLLQLMGDGLKLISKEIIIPAKADKPIFIAAPILFVGT 161

Query: 193 XXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQT 366
                  IP     +    ++G++    +      I I++ WS+NS +  +GG+R++ Q 
Sbjct: 162 AAAFVALIPVAPGWVVADVDMGLIGVFAVIGFFPIITILSAWSANSKFPFIGGIRALHQM 221

Query: 367 ISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFD 546
           +S+E+                        Q                     AE  R PFD
Sbjct: 222 VSFEIPLILSCLGVVILTGTFNLSEIAASQSFFPWIVFLPIGAIVFIICALAELERIPFD 281

Query: 547 FAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
             E E E+V+G+  E     + L+ L  Y  +     + V++  G
Sbjct: 282 LPEAESEIVAGWLTELSGMMYGLVQLGSYVKLYAFAGLFVVLFLG 326


>UniRef50_O79095 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=12; Braconidae|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Cotesia congregata (Parasitoid wasp)
          Length = 135

 Score = 72.1 bits (169), Expect = 1e-11
 Identities = 33/79 (41%), Positives = 48/79 (60%)
 Frame = +1

Query: 145 SNYFCYYFSPVFRFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNS 324
           S++  Y  SP   FI         P+  NL+ F   +L+FLCL SLGVY +I+AGWSSNS
Sbjct: 1   SSFDLYIASPSIMFILIMMLWMIYPFSSNLLMFENSMLYFLCLMSLGVYGLILAGWSSNS 60

Query: 325 NYALLGGLRSVAQTISYEV 381
           +++++G +  +    SYEV
Sbjct: 61  SFSMIGAIAQLLNQFSYEV 79


>UniRef50_Q6LE55 Cluster: NADH ubiquinone oxidoreductase subunit;
           n=3; Cystobacterineae|Rep: NADH ubiquinone
           oxidoreductase subunit - Myxococcus xanthus
          Length = 432

 Score = 70.1 bits (164), Expect = 5e-11
 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 21/146 (14%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFI----------GLLQPFSDAIKLFTKERTYPNFSNYF 156
           LT+ ERK   +IQ R GPN+              GL    +D +K+ TKE   P  +N F
Sbjct: 60  LTMAERKWSAFIQDRMGPNRGPHRPARPEERPLGGLPHILTDVLKMLTKEDLIPAAANRF 119

Query: 157 CYYFSPVFRFIXXXXXXXXIPYIYNLICF-----------NLGILFFLCLTSLGVYIVII 303
            +   P+  F         +P   ++  F           + G L+ L + SL VY   +
Sbjct: 120 MFNLGPILAFAPTFALFAVVPAGPSVQVFGRNVDMVVATPDFGALYVLAIASLAVYGTAL 179

Query: 304 AGWSSNSNYALLGGLRSVAQTISYEV 381
           AGW+SN+ + LLGG+R+ +Q I+YEV
Sbjct: 180 AGWASNNKFGLLGGVRATSQMIAYEV 205



 Score = 37.1 bits (82), Expect = 0.40
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           ET R PFD   GE E++ G+ +EY    F L  ++E+  ++ +  +   + +G
Sbjct: 276 ETKRAPFDLPGGESEII-GYFVEYSCMKFGLFMISEFVEVVVLAGVTTAVFFG 327


>UniRef50_UPI00015BB094 Cluster: NADH dehydrogenase (quinone); n=1;
           Ignicoccus hospitalis KIN4/I|Rep: NADH dehydrogenase
           (quinone) - Ignicoccus hospitalis KIN4/I
          Length = 355

 Score = 69.3 bits (162), Expect = 8e-11
 Identities = 65/251 (25%), Positives = 97/251 (38%), Gaps = 29/251 (11%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           +ERK+ G I  R GP  VG+ GLLQ  +D +K  +KE   P   N   YY  P+      
Sbjct: 32  MERKMWGKIMQRYGPTHVGYAGLLQLIADFLKYLSKELFAPRRPNKLFYYGLPLLLIAII 91

Query: 196 XXXXXXIPYIY----------NLICFNLGILFFLCLTSL-----GV----YIVIIA---- 306
                 IP  Y           L   N+ +  +     L     GV    Y+ ++A    
Sbjct: 92  SIPLVLIPLDYVALSGLEGLLKLAGINVNLSDYAASKLLDELAPGVGLLGYVAVVAVTMP 151

Query: 307 -----GWSSNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXX 471
                 W+  + Y  LG  R+V   ++YEV                  Y    +Q+    
Sbjct: 152 LMYMLSWNQANKYGALGAFRTVLLLVTYEV-PFLIAIAAVAALGGLSFYGVVDFQKSAWL 210

Query: 472 XXXXXXXXXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIF-LAEYSSILF 648
                           AE+ R PFD  E E+E+V G+N+EY  G F L++ L  Y+  L+
Sbjct: 211 ALLNPIAALVLFITLLAESERPPFDHPEAEQEIVHGWNVEYGAGEFILLYGLYLYTKALY 270

Query: 649 IRMILVIIKYG 681
              ++ +   G
Sbjct: 271 ADALITLFLLG 281


>UniRef50_A3E7R8 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=6; Microchiroptera|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Hypsugo sp. FFM-2006A
          Length = 300

 Score = 68.5 bits (160), Expect = 1e-10
 Identities = 30/54 (55%), Positives = 38/54 (70%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AETNR PFD  EGE ELVSGFN+EY  G FAL  LAEY++I+ +  + + +  G
Sbjct: 191 AETNRAPFDLTEGESELVSGFNVEYAGGSFALFXLAEYANIIMMNALTITLFLG 244



 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 30/46 (65%), Positives = 33/46 (71%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYP 138
           AFLTLLER   GY + R GPN VG  GLLQP +DA+KLFTKE   P
Sbjct: 18  AFLTLLERXXXGYXRXRXGPNIVGPYGLLQPIADAVKLFTKEPLQP 63


>UniRef50_A1RZ42 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Thermofilum pendens Hrk 5|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Thermofilum pendens (strain Hrk 5)
          Length = 322

 Score = 67.3 bits (157), Expect = 3e-10
 Identities = 58/225 (25%), Positives = 87/225 (38%), Gaps = 3/225 (1%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           LERKV   IQ R GP   G  GLLQP  D  KL  KE   P +++ F +  +P+      
Sbjct: 27  LERKVTARIQRRVGPLYAGPHGLLQPVYDFFKLLLKEEIVPGWTDVFTFRVAPILAVTIP 86

Query: 196 XXXXXXIPY--IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTI 369
                 +P      L+ F         L +LGV  + + G+S  S Y  +G  R + Q  
Sbjct: 87  VFGMCVLPVASTKGLLSFEGDFALVFLLLALGVLTLSLTGYSVLSPYTAIGVGRLLVQYS 146

Query: 370 SYEVRXXXXXXXXXXXXXXXXXYFFYLYQE-XXXXXXXXXXXXXXXXXXXXAETNRTPFD 546
            YE                        YQE                     A+  + PFD
Sbjct: 147 MYEGVFLLSLASAALQAKTMSFEGILAYQESHGFLGLYQPVSLAAALVALLAKLEKRPFD 206

Query: 547 FAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
               ++E+V+G+  E    G A + L E  S+++   ++V++  G
Sbjct: 207 LPHAKQEVVAGWMTELSGRGLAFMRLYEDLSMVWGIALIVVVFLG 251


>UniRef50_A6Q8J6 Cluster: NADH-quinone oxidoreductase, chain H; n=2;
           Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
           chain H - Sulfurovum sp. (strain NBC37-1)
          Length = 317

 Score = 65.7 bits (153), Expect = 1e-09
 Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 2/212 (0%)
 Frame = +1

Query: 22  RKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXX 201
           RK +  +  R GP+  G  G  Q   D  KL +KE   P   N + +   P+   I    
Sbjct: 28  RKFMAPLHKRVGPHFNGLAGSYQTLFDLSKLLSKESITPEGVNPYLFSMMPLIALIVAML 87

Query: 202 XXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISY 375
               IP+   Y  I    G+L  + L  +  +++ + G+ S++ Y+ LGG+R + Q IS 
Sbjct: 88  PAAFIPWTASYPAIPSAFGLLALIVLIGIEPFLLFLTGFGSDNKYSFLGGIRVLTQAISM 147

Query: 376 EVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFDFAE 555
           E                       + +                         + PF+  +
Sbjct: 148 ETAFFLAALSPALLFGTMDLKII-VEETSWLSVLILLPAFFLYFIALLGLLEQPPFNIPD 206

Query: 556 GERELVSGFNIEYRRGGFALIFLAEYSSILFI 651
            E+E+V GF  EY    + L+ +AE+S  + +
Sbjct: 207 AEQEIVYGFYTEYSGTNYFLLKMAEFSEFMAV 238


>UniRef50_Q09KP1 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=9; Digenea|Rep: NADH-ubiquinone oxidoreductase chain 1
           - Opisthorchis viverrini
          Length = 226

 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 42/138 (30%), Positives = 61/138 (44%)
 Frame = +1

Query: 238 CFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXX 417
           C ++ +L+ L +TSL  Y V+  GW S + +AL+  +RS   ++++E             
Sbjct: 31  CNSVMLLWLLLVTSLTGYSVLSIGWGSYNKFALISCVRSAFSSVTFEACFMCVIVICALV 90

Query: 418 XXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYR 597
                   F L +E                     E NRTP D+AE E ELVSG + EY 
Sbjct: 91  CGNYGS--FVLLEEFWGVGLVVPVCYVVWLVGMLCECNRTPLDYAEAESELVSGLSTEYC 148

Query: 598 RGGFALIFLAEYSSILFI 651
              F  +F  EY  I+FI
Sbjct: 149 NVPFTCLFACEY-LIMFI 165


>UniRef50_A7CUF6 Cluster: NADH dehydrogenase; n=1; Opitutaceae
           bacterium TAV2|Rep: NADH dehydrogenase - Opitutaceae
           bacterium TAV2
          Length = 400

 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 29/156 (18%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGF---------------IGLLQPFSDAIKLFTKERTY 135
           A  ++ ERK+  +IQ R GPN+                   G++Q  +D  K   KE   
Sbjct: 34  AACSMAERKIAAWIQDRPGPNRTATPLLMWIPILGPLLKRFGVMQLMADGGKFLFKEDPV 93

Query: 136 PNFSNYFCYYFSPVFRFIXXXXXXXXIP---YIYN-----------LICFNLGILFFLCL 273
           P F     +  +P+   I        +P   YI N           L   ++G+L    +
Sbjct: 94  PAFVEKLYFIAAPIVAMIPALCTVVIVPFSAYIANINGTPTLVPVMLANVDVGLLAVFAV 153

Query: 274 TSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEV 381
           +SL VY  I+AGW+S+S Y+ LGG+R+ AQ ISYE+
Sbjct: 154 SSLAVYSQILAGWASHSKYSFLGGVRASAQIISYEL 189



 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 22/54 (40%), Positives = 33/54 (61%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AETNR PFD  E E +LV+ F  EY    ++L ++AEY  +L    + V++ +G
Sbjct: 259 AETNRQPFDTIESEADLVNSFASEYGAYKWSLFYVAEYCHMLVGSAVFVLLFFG 312


>UniRef50_Q60IJ1 Cluster: Putative uncharacterized protein CBG24965;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG24965 - Caenorhabditis
           briggsae
          Length = 312

 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 43/127 (33%), Positives = 59/127 (46%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVF 180
           AF+TL ER +LG  Q R GP KV F+GL Q   D +KL  KE+  P  S+   +   PV 
Sbjct: 3   AFITLYERHLLGRSQNRLGPTKVTFMGLAQALLDGVKLLKKEQITPLNSSEVSFLLVPVL 62

Query: 181 RFIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
            F+                          CL    VY  ++ G  S S Y ++G +R+  
Sbjct: 63  FFL--------------------------CLIGFSVYTTLVRGIVSKSKYGMIGAIRARR 96

Query: 361 QTISYEV 381
           Q+ISYE+
Sbjct: 97  QSISYEI 103



 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           AE NR PFDF+EGE ELVSG+N+E+    F L+FL ++S +    +  ++I
Sbjct: 124 AELNRAPFDFSEGESELVSGYNVEFASVAFVLLFLRDFSILASFSIFSILI 174


>UniRef50_O28444 Cluster: F420H2:quinone oxidoreductase, 41.2 kDa
           subunit, putative; n=4; Archaea|Rep: F420H2:quinone
           oxidoreductase, 41.2 kDa subunit, putative -
           Archaeoglobus fulgidus
          Length = 369

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 54/233 (23%), Positives = 88/233 (37%), Gaps = 7/233 (3%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVG--FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPV 177
           ++   ERK+   IQ R GP +V     G +Q  +D I+ F +E      ++   +   P+
Sbjct: 69  YIVWYERKLTARIQWRVGPLEVARPIRGAIQALADGIRYFFQEAIVHREAHRPYFVQLPI 128

Query: 178 FRFIXXXXXXXXIPY-----IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLG 342
             FI        IP      IY      L + F   +  + + IV I GW+SNS +A +G
Sbjct: 129 LAFIPVLLPIMFIPAGSAVGIYTPNAIQLTVTF---IALIPITIVAI-GWASNSRFAYIG 184

Query: 343 GLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXA 522
            +R      +YEV                  Y     Q                      
Sbjct: 185 SVREAFMYFAYEVPFIIAVISMIFLYGSGDAYVAVEKQSAIPGALLNPIAFIVYLIAMLM 244

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
            T+R PF+  E ++E+  G  +EY    F L+ +  Y  +  + ++  I+  G
Sbjct: 245 ATSRLPFEIPEADQEIAFGPFVEYSGILFGLVMVLAYEKLYIMTLLFTILFLG 297


>UniRef50_Q9XMH4 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Lysiphlebus fabarum|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Lysiphlebus fabarum
          Length = 115

 Score = 59.7 bits (138), Expect = 6e-08
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +1

Query: 544 DFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           D +EGE ELVSGFNIEY    F LIFLAEY+SI+F+ +I V++
Sbjct: 1   DLSEGESELVSGFNIEYSNSKFILIFLAEYTSIIFMMLIFVMM 43


>UniRef50_A7H9V7 Cluster: NADH dehydrogenase (Quinone) precursor;
           n=2; Anaeromyxobacter|Rep: NADH dehydrogenase (Quinone)
           precursor - Anaeromyxobacter sp. Fw109-5
          Length = 450

 Score = 58.8 bits (136), Expect = 1e-07
 Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 27/154 (17%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQ---PF--SDAIKLFTKERTYPN------FS 147
           + LT+ ERK    IQ R G N++  +G      PF  +DA+K+ TKE   P       F 
Sbjct: 66  SLLTVAERKWSAMIQNRIGANRIRVMGSALGGIPFLAADALKMLTKESAEPRGRTRVLFE 125

Query: 148 NYFCYYFSPVFRFIXXXXXXXXIPY----------------IYNLICFNLGILFFLCLTS 279
                 F+PVF           IP                    +   + G+L+   ++S
Sbjct: 126 LAPALAFAPVFALFAIIPVGPSIPLGSLVDGAAGALGSAGVALQVASIDAGLLYIFAISS 185

Query: 280 LGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEV 381
           L VY   +AGW+SN+   LLGG+R+ +Q +SYEV
Sbjct: 186 LAVYGTSLAGWASNNKLGLLGGVRASSQMMSYEV 219



 Score = 46.0 bits (104), Expect = 9e-04
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AET R PFD  EGE E+V G+ +EY    F L+FL E+  I+ +  ++  +  G
Sbjct: 273 AETKRAPFDLPEGESEIV-GYFVEYSGMRFGLMFLGEFVEIVVLSAVVTAVFLG 325


>UniRef50_A3MXU6 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1 precursor; n=3; Pyrobaculum|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1
           precursor - Pyrobaculum calidifontis (strain JCM 11548 /
           VA1)
          Length = 324

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 51/209 (24%), Positives = 77/209 (36%), Gaps = 4/209 (1%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVG--FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           ERK++  +Q R GP  V     G LQP +D IKL   E   P  +N   +  +P+  F+ 
Sbjct: 32  ERKLVARVQWRYGPLYVSKPLGGFLQPIADLIKLVFSELVLPRHTNRHLFALTPLLLFVA 91

Query: 193 XXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAG--WSSNSNYALLGGLRSVAQT 366
                  I     L+ F+      L + +  +  V + G  W+    +  +G +R +  T
Sbjct: 92  EAVPVVFIAVAPGLVIFHHSYGLALAVVTWLLIPVFLVGMAWAEADKFTYIGAVREILLT 151

Query: 367 ISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFD 546
            +YEV                  Y   + ++                      T R PF+
Sbjct: 152 AAYEVPLLLSVLAMFILYGTADPY-AVVERQSLWGVLLNPLAFLAFYISLAMSTTRFPFE 210

Query: 547 FAEGERELVSGFNIEYRRGGFALIFLAEY 633
             E E E+V G   EY    F L F A Y
Sbjct: 211 IPEAEPEVVLGPYTEYGSTLFILSFGANY 239


>UniRef50_Q2WGD5 Cluster: NADH dehydrogenase subunit 1; n=1;
           Selaginella uncinata|Rep: NADH dehydrogenase subunit 1 -
           Selaginella uncinata (Blue spikemoss) (Peacock
           spikemoss)
          Length = 331

 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           LERK+   IQ R GP   G +G++Q  +D +K   KE   P+  + + +   P       
Sbjct: 9   LERKISAGIQQRIGPGYAGPLGIIQALADGVKPLFKEDIIPSKGDPWSFSIGPAMVIAPV 68

Query: 196 XXXXXXIPYIYNLICFN--LGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTI 369
                 IP  ++++  +   G+   +  +S+      + G+ SN+ Y+  GG R+ AQ+ 
Sbjct: 69  PVGHSVIPSGHSIVLADPGTGVPSRIAASSIAPLGPPMTGYGSNNKYSFSGGPRAAAQST 128

Query: 370 SYEV 381
           SYE+
Sbjct: 129 SYEI 132


>UniRef50_Q34148 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Celastrina ladon|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Celastrina ladon (Spring azure)
          Length = 62

 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 24/30 (80%), Positives = 29/30 (96%)
 Frame = +1

Query: 1   AFLTLLERKVLGYIQIRKGPNKVGFIGLLQ 90
           AFLTL+ERK+L Y+QIRKGPNKVGF+G+LQ
Sbjct: 21  AFLTLMERKILSYMQIRKGPNKVGFMGMLQ 50


>UniRef50_P19040 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Artemia salina|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Artemia salina (Brine shrimp)
          Length = 130

 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRG--GFALIFL--AEYSSILFIRMILVI 669
           AETNRTPFD AEGE ++  GFN EY     GFALI L  +EY+SILF+ +  V+
Sbjct: 2   AETNRTPFDLAEGECQVSVGFNTEYMHSSVGFALIMLSESEYASILFMSLFSVM 55


>UniRef50_A1AUU5 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1 precursor; n=2; Pelobacter propionicus DSM
           2379|Rep: Respiratory-chain NADH dehydrogenase, subunit
           1 precursor - Pelobacter propionicus (strain DSM 2379)
          Length = 313

 Score = 56.8 bits (131), Expect = 5e-07
 Identities = 51/221 (23%), Positives = 85/221 (38%), Gaps = 3/221 (1%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXX 198
           +RK+   +Q R+GP         QPF+D IKL +KE   P  ++ F +   P+       
Sbjct: 28  DRKLYARMQNRQGPP------WFQPFADFIKLSSKEDIIPEEADPFMFRLMPLVALAASV 81

Query: 199 XXXXXIPYIYN--LICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTIS 372
                IP      L+ F   ++  + L ++      +AGW S S Y+++G +RS+ Q ++
Sbjct: 82  CAILYIPIWGRGALLSFEGDLVIVVYLLTIPTMTFFLAGWYSASLYSMIGAVRSLTQLLA 141

Query: 373 YEVRXXXXXXXXXXXXXXXXXY-FFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFDF 549
           YEV                        Y                       +  + PFD 
Sbjct: 142 YEVPLYLALLAPACLADSWSLAGMAAYYGAHPWRWLLNLIGFGVGLVVMLGKLEKVPFDT 201

Query: 550 AEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
            E E E+V+G   EY     AL  +A    ++ +  +L  +
Sbjct: 202 PEAETEIVAGAFTEYSGRLLALFRMAISIEMIVLASLLAAV 242


>UniRef50_A3H7X8 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Caldivirga maquilingensis IC-167|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Caldivirga maquilingensis IC-167
          Length = 361

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVG--FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPV 177
           F+   ERK    +Q R GP ++     G++QP SD I+   +E      ++   +   PV
Sbjct: 56  FVIWWERKAAARVQWRYGPLEISRRIGGVIQPISDLIRYTLQEIIIHQEADEAYFLHMPV 115

Query: 178 FRFIXXXXXXXXIPYIYNLICFNLG--ILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLR 351
           F FI        +P   ++   N G  IL    L S+   ++I++GW+S   +A +G +R
Sbjct: 116 FGFIFALLPVLFLPAGPHVYAINTGYNILIAAVLISIFNIVIIVSGWASTDKWAYIGTVR 175

Query: 352 SVAQTISYEV 381
                 +YEV
Sbjct: 176 EAFMYAAYEV 185


>UniRef50_Q4Z0A0 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 80

 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 27/38 (71%), Positives = 28/38 (73%)
 Frame = -2

Query: 632 YSAKKIKANPPLLYSILNPETNSLSPSAKSKGVRFVSA 519
           YSA K  AN P  YS LNP+TNS SPS KSKG RFVSA
Sbjct: 13  YSAMKNNANGPAAYSTLNPDTNSDSPSVKSKGARFVSA 50


>UniRef50_Q94YW8 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=15; Digenea|Rep: NADH-ubiquinone oxidoreductase chain
           1 - Steringophorus haedrichi
          Length = 157

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
 Frame = +1

Query: 67  VGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPYIYNLICFN 246
           VG +GLLQ F+D +KL  K +   + S  +  +   +              + Y + C +
Sbjct: 1   VGIVGLLQSFADFLKLIIKVKLAGSQSRSWLSWGGVILLVFLSCAYC----FFYAVACLH 56

Query: 247 LG----ILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYE 378
           +G    +L+FL +TS+  Y ++  GW S + YALL  +RS   ++++E
Sbjct: 57  IGGSNVLLWFLVITSITGYSLLAVGWGSYNKYALLSSIRSALGSVTFE 104


>UniRef50_A1RZ51 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Thermofilum pendens Hrk 5|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Thermofilum pendens (strain Hrk 5)
          Length = 337

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 9/224 (4%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVG--FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           ERK+   +Q+R GP  V   F G+LQ  +D  +   +E   P  ++   Y  +P      
Sbjct: 39  ERKIAARVQMRVGPLYVTRHFGGVLQMLADGTRYMFQEFIVPETADKVPYMLAPALALTL 98

Query: 193 XXXXXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQT 366
                  IP    +  +     +   L + +     V++ GWSSN+ +++ G +R    T
Sbjct: 99  AIAPFALIPSAPGFAPVKSPYSLPALLAILASTPLSVLLMGWSSNNKFSIQGAVREAFMT 158

Query: 367 ISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFD 546
           ++YEV                      + ++                      + R PFD
Sbjct: 159 LAYEVPLFLSALSMAILYGSMDLEEI-VGRQFLPGALLNPVAAFTFFVAMVMSSGRLPFD 217

Query: 547 FAEGERELVSGFNIEYRR---G-GFALIFLAEYS-SILFIRMIL 663
             EGE+E+V+G  +EY     G G  L +L  Y+ S+L+  + L
Sbjct: 218 IVEGEQEIVAGPYVEYTGIVFGIGMGLAYLKLYALSLLYSLLFL 261


>UniRef50_A1RWL7 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Thermofilum pendens Hrk 5|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Thermofilum pendens (strain Hrk 5)
          Length = 312

 Score = 53.6 bits (123), Expect = 4e-06
 Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 7/229 (3%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKER-TYPNFSNYFCYYFSPVFRFIX 192
           ++RK++  +Q+RKGP       ++QP+ D +KL++K++ + P  S++  Y  +P+     
Sbjct: 26  IQRKIIARLQLRKGP------PVIQPYRDLLKLWSKDKLSVPEVSSWI-YMATPLLYLAI 78

Query: 193 XXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTIS 372
                  IP   N+      I   +   +L  +++ IA   + S  A  G  R  A  + 
Sbjct: 79  TVVIAMSIPVFVNMGIPLADIFLLIYSLALARFVLSIASLDTGSPLAAAGAWRENAAAVV 138

Query: 373 YEVRXXXXXXXXXXXXXXXXXYFFY----LYQEXXXXXXXXXXXXXXXXXXXXAETNRTP 540
            EV                  Y       L  E                    AE    P
Sbjct: 139 IEVPMLFAALLPALEGGSSSLYAVVSHTCLRWETFIARPSYIVAALAFFVCMLAEAGVLP 198

Query: 541 FDFAEGERELVSGFNIEYRRGGFALIFLAEY--SSILFIRMILVIIKYG 681
           FD AE E+E+  G   EY     AL+ L+     ++LF   + + + YG
Sbjct: 199 FDVAEAEQEIQEGLLQEYSGRQLALMQLSMMVKRAVLFTLFVDIFLPYG 247


>UniRef50_A3DJU0 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=2; cellular organisms|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 291

 Score = 53.2 bits (122), Expect = 6e-06
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRF 186
           LT ++R +   +Q RKGP+      +LQPF D +KLF KE    N  + F  Y S +F  
Sbjct: 25  LTGIDRVITARMQGRKGPS------VLQPFYDVLKLFQKESIEVNTMHRFFVYISLIF-- 76

Query: 187 IXXXXXXXXIPYIYNLICFNLG--ILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                       I+  +   LG  IL  L   +LG    ++ G++SNS Y+ +G  R + 
Sbjct: 77  -----------VIFTTVIMLLGGDILLALFALTLGSIFFVLGGYASNSPYSTIGSERELL 125

Query: 361 QTISYE 378
           Q +++E
Sbjct: 126 QMMAFE 131


>UniRef50_Q5V276 Cluster: NADH dehydrogenase/oxidoreductase; n=4;
           Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
           - Haloarcula marismortui (Halobacterium marismortui)
          Length = 347

 Score = 53.2 bits (122), Expect = 6e-06
 Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXX 198
           +RK+      R   +++G  GL    +DA++L +KE   P   +   +  +P+       
Sbjct: 51  KRKITAAFTDRIAVDRIGPYGLFIIVADAVRLLSKELIVPEGVDRPAWDLAPLIIASTAL 110

Query: 199 XXXXXIPYI--YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTIS 372
                IP     +L    +G+ +   + S     +++AG++SN+ Y+ LGGLR+VAQ ++
Sbjct: 111 LGFAVIPMGNGIHLADPEVGLAYVFAVASTTSIGLVMAGYASNNKYSFLGGLRAVAQNLA 170

Query: 373 YEV 381
           YE+
Sbjct: 171 YEI 173



 Score = 41.5 bits (93), Expect = 0.018
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AE  R PFD  E   E+V+G+  EY    F LI+L E+  I     I+  I  G
Sbjct: 227 AEVGRNPFDIPEAPTEIVAGYQTEYSSVYFVLIYLGEFIHIFLGGAIIATIFLG 280


>UniRef50_A7D3R6 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Halorubrum lacusprofundi ATCC 49239|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Halorubrum lacusprofundi ATCC 49239
          Length = 357

 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXX 198
           +RK+      R   N++G  GLL   + A++L  KE   P   +   +  +P+       
Sbjct: 52  KRKITAAFTDRIAVNRIGPFGLLIIPAAAVQLLAKELIIPEGVDRPTWDIAPILLPASAM 111

Query: 199 XXXXXIPY------IYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                IP         +L    +G+       S+    +++AG++SN+ Y+LLGGLR+VA
Sbjct: 112 LGFSVIPMGQIGPLNIHLADPEVGLALVFAFASIASVSLVMAGYASNNKYSLLGGLRAVA 171

Query: 361 QTISYEV 381
           Q ++YE+
Sbjct: 172 QNLAYEI 178



 Score = 41.5 bits (93), Expect = 0.018
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AE  R PFD  E   E+V G+  EY    F L +L E+  I     IL ++  G
Sbjct: 236 AEIGRNPFDIPEAPTEIVGGYQTEYSSAYFVLFYLGEFVHIFLGGAILSVVFLG 289


>UniRef50_A3DMA3 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Staphylothermus marinus F1|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
           F1)
          Length = 330

 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F   + RKV G +Q R+GP  VG  GLLQPF+D +KL  KE     +S            
Sbjct: 28  FTQWIYRKVTGRVQYRRGPTYVGPFGLLQPFADFMKLLLKEDVVSRYSAKIAPVIVAALG 87

Query: 184 FIXXXXXXXXIPYIYNLI--CFNLGILFFLCL-TSLGVYIVIIAGWSSNSNYALLGGLRS 354
                      P  Y+ +   F++ + F+L L TSL    ++  G ++ + Y  LG  R 
Sbjct: 88  VGAITALTLMTPLAYDPVHAPFDIIVFFYLALWTSLS---IMFLGLATPNPYTSLGVGRY 144

Query: 355 VAQTISYE 378
           +A  +S E
Sbjct: 145 MALLVSAE 152


>UniRef50_P08834 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=45; Magnoliophyta|Rep: NADH-ubiquinone oxidoreductase
           chain 1 - Citrullus lanatus (Watermelon) (Citrullus
           vulgaris)
          Length = 316

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 30/91 (32%), Positives = 36/91 (39%)
 Frame = +1

Query: 322 SNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXX 501
           S YA LG LRS AQ + YEV                      + Q+              
Sbjct: 106 SKYAFLGALRSAAQMVPYEVSIGLILIVRLICVGPRNSSEIVMAQKQIWSGIPLFPVLVM 165

Query: 502 XXXXXXAETNRTPFDFAEGERELVSGFNIEY 594
                 AETNR PFD  E E E V+G+N+EY
Sbjct: 166 FFISRLAETNRAPFDLPEAEAESVAGYNVEY 196


>UniRef50_Q980H2 Cluster: NADH dehydrogenase subunit H; n=4;
           Sulfolobaceae|Rep: NADH dehydrogenase subunit H -
           Sulfolobus solfataricus
          Length = 352

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 62/248 (25%), Positives = 91/248 (36%), Gaps = 27/248 (10%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVG--FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           ERK    +Q+R GP        G+LQ F+DAIK    E   PN  N   Y  SPV   I 
Sbjct: 39  ERKAAAIVQLRYGPYYASKRLGGILQLFADAIKFVFSEIIIPNGVNQTLYAISPVLVLIF 98

Query: 193 XXXXXXXIPY-----------IYNLICFNL----GIL--FF--------LCLTSLGVYIV 297
                  IP            +Y+ I ++     GIL  +F        + L SL   +V
Sbjct: 99  AFLPMALIPISTIPTQGSILSVYHGIFYDTQIHQGILVPYFIEYNLIGIIALESLYPILV 158

Query: 298 IIAGWSSNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXX 477
           I   W++N+ +A++G +R    ++SY+V                      +         
Sbjct: 159 IFLAWNTNNRFAIVGSIREAYLSVSYDVLIIISTLALGLEYHTLD--VAKIVTSGIPGFI 216

Query: 478 XXXXXXXXXXXXXXAETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRM 657
                           ++R PF+  E E ELV G   EY    F L     Y + L   +
Sbjct: 217 ANPIAAFVFLVAMLIGSSRFPFEIVEAETELVIGPYTEYSGFLFVLTMAGSYVANLVYAI 276

Query: 658 ILVIIKYG 681
           + V +  G
Sbjct: 277 LFVDLFLG 284


>UniRef50_Q8PUL3 Cluster: Ech Hydrogenase, Subunit; n=3;
           Methanosarcina|Rep: Ech Hydrogenase, Subunit -
           Methanosarcina mazei (Methanosarcina frisia)
          Length = 290

 Score = 49.6 bits (113), Expect = 7e-05
 Identities = 50/221 (22%), Positives = 84/221 (38%), Gaps = 3/221 (1%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           ++RK+   +Q R GP       LLQP+ D  KL +KE    N S  F      VF  +  
Sbjct: 27  IDRKITARLQGRVGPP------LLQPYYDVRKLMSKENMIVNGSQNFYVVVYLVFIILSL 80

Query: 196 XXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISY 375
                       ++ F   +L  + + ++    +I+ G S+ S YA +G  R +   +SY
Sbjct: 81  L-----------MLIFRADMLMIIFVYTVASLALIVGGMSTGSPYARVGSSREIMAILSY 129

Query: 376 EVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFDFA- 552
           E                       L +                      +  ++PFD++ 
Sbjct: 130 E--PVLILYALAIYLVTGTFKVSALLEASTPLLIYTPLLFIAMIVVLNIKLKKSPFDYST 187

Query: 553 --EGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVI 669
              G +ELV G   EY   GFA I +A +   +F+  ++ +
Sbjct: 188 SHHGHQELVKGMTTEYSGPGFATIEIAHFYEYVFLTGLIFL 228


>UniRef50_Q8ZWX0 Cluster: NADH-ubiquinone oxidoreductase subunit;
           n=4; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
           subunit - Pyrobaculum aerophilum
          Length = 349

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVGFI--GLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           ERK    +Q+R GP  V  +  G LQ  +DA K    E   P  ++   + + P      
Sbjct: 39  ERKAAARVQMRVGPYHVSPLLGGYLQLLADAFKFIISEPIVPRGAHKVLFVWGPPIFVTL 98

Query: 193 XXXXXXXIPYIYNLICFN------LGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
                  +P    L           G +F L +  L   I++I GWS N+ +A +G  R 
Sbjct: 99  AFGASLLLPLTPELRLIKDAGLLPYGFVFSLVILLLVSIIIVIIGWSVNNKFAYIGAARE 158

Query: 355 VAQTISYEV 381
                +YE+
Sbjct: 159 ALLVAAYEI 167


>UniRef50_Q9YC30 Cluster: NuoH homolog; n=1; Aeropyrum pernix|Rep:
           NuoH homolog - Aeropyrum pernix
          Length = 375

 Score = 46.0 bits (104), Expect = 9e-04
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
 Frame = +1

Query: 19  ERKVLGYIQIRKGPNKVG--FIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIX 192
           ERK    +Q R GP        GLL   +D ++   ++   P   +YF +  +P+     
Sbjct: 38  ERKAAARVQRRIGPYWASPRLGGLLHLVADMMRYMFQQVIIPRTVDYFPFLVAPIVGMAV 97

Query: 193 XXXXXXXIPYIYNLICFNL-------GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLR 351
                  +P   N   + L        +L  L +++L    +I+AGW++N+ + ++GG+R
Sbjct: 98  SILPFAVVPLTANPSYWPLPPGLMEYSLLLALAISTLPPIFLIVAGWAANNPFTIVGGVR 157

Query: 352 SVAQTISYEV 381
                ++YE+
Sbjct: 158 EAFIILAYEL 167


>UniRef50_Q8RDB7 Cluster: NADH:ubiquinone oxidoreductase subunit 1;
           n=1; Thermoanaerobacter tengcongensis|Rep:
           NADH:ubiquinone oxidoreductase subunit 1 -
           Thermoanaerobacter tengcongensis
          Length = 283

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 3/226 (1%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           FL+ ++RK+  +IQ R GP       + QPF D +KL  K++   N    F  Y   +  
Sbjct: 21  FLSGIDRKLTAFIQGRYGPP------IWQPFYDIVKLLYKQKILVNNFQVFSAYMYLLTA 74

Query: 184 FIXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQ 363
            +              L      +L  L + S+G+   I    S+ S Y+ +G  R + Q
Sbjct: 75  ILS-----------VGLFAIKADLLMILFVMSVGLVFYIAGALSTKSPYSQVGAQRELMQ 123

Query: 364 TISYEVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPF 543
            ++YE                   +                            +  ++PF
Sbjct: 124 MLAYE---PMLIFFAIALYNATGSFNIGQIMTHGRLLLDLPLMFILLALVLTIKLKKSPF 180

Query: 544 DFAEGE---RELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVII 672
           D +  E   +ELV G   +Y     ALI +A++  ++ I M++ I+
Sbjct: 181 DLSASEHAHQELVRGILTDYSGPYLALIHIADWYEMVLILMMIAIL 226


>UniRef50_A5FW44 Cluster: Formate hydrogenlyase subunit 4-like
           protein; n=1; Acidiphilium cryptum JF-5|Rep: Formate
           hydrogenlyase subunit 4-like protein - Acidiphilium
           cryptum (strain JF-5)
          Length = 317

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
 Frame = +1

Query: 79  GLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPYI--YNLICFNLG 252
           G+LQP+ D  KLF K+   P  +++  ++ +PV  F         IP +  Y L   N+G
Sbjct: 41  GVLQPYRDLWKLFHKDIVVPETASWL-FWVTPVVAFTCMMTVPILIPVLTNYPLPLSNMG 99

Query: 253 -ILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRS 354
            IL    + +LG +++ +AG  + S Y  +G  R+
Sbjct: 100 DILGGGLILTLGSFMITLAGLDTGSAYGGIGSSRA 134


>UniRef50_Q7GEL5 Cluster: NDH-A protein; n=7; Magnoliophyta|Rep:
           NDH-A protein - Hordeum vulgare (Barley)
          Length = 178

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 520 AETNRTPFDFAEGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           AE  R PFD  E E ELV+G+  EY    + L +L  Y ++L   + + ++  G
Sbjct: 39  AECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLG 92


>UniRef50_A4XJP3 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=2; Clostridiales|Rep: Respiratory-chain
           NADH dehydrogenase, subunit 1 - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 286

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 32/124 (25%), Positives = 55/124 (44%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRF 186
           LT ++RK+   +Q R GP       +LQPF D  KLF+KE    + +     +   VF  
Sbjct: 21  LTGIDRKITARMQNRFGPP------ILQPFYDLFKLFSKETIVVSSTQILYAFLFLVFNM 74

Query: 187 IXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQT 366
           +              +    + +L  L + +  V  +I+   S+NS Y+ +G  R +   
Sbjct: 75  VALV-----------MFVLKMDLLLILFVLAFAVTALILGAMSTNSPYSRIGAHRELISV 123

Query: 367 ISYE 378
           ++YE
Sbjct: 124 LAYE 127


>UniRef50_P15576 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=20; Trypanosomatidae|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Leishmania tarentolae
           (Sauroleishmania tarentolae)
          Length = 313

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTK 123
           F++L ER++L  +QIR GP  + F G+L P +D IKLF K
Sbjct: 23  FVSLCERRILALVQIRIGP-ALCFFGILTPITDGIKLFIK 61


>UniRef50_Q7WT81 Cluster: EchB; n=3; Desulfovibrio|Rep: EchB -
           Desulfovibrio gigas
          Length = 284

 Score = 41.1 bits (92), Expect = 0.024
 Identities = 32/124 (25%), Positives = 59/124 (47%)
 Frame = +1

Query: 7   LTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRF 186
           +T ++R++   +Q R GP       +LQPF D  KL  KE+   N    FC Y      +
Sbjct: 24  ITGVDRRITARLQSRLGPP------ILQPFYDVAKLLGKEKLLNNSWQAFCAYV-----Y 72

Query: 187 IXXXXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQT 366
           +        + ++ +    +L ++FF  + ++G   ++I   S  S Y+ +G  R + Q 
Sbjct: 73  LVAAATSVVLFFLQS----DLLLIFF--VQAVGAVFLVIGAMSVPSPYSQIGAQRELIQV 126

Query: 367 ISYE 378
           ++YE
Sbjct: 127 LTYE 130


>UniRef50_P77937 Cluster: CooK; n=8; Bacteria|Rep: CooK -
           Rhodospirillum rubrum
          Length = 323

 Score = 41.1 bits (92), Expect = 0.024
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = +1

Query: 82  LLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPY--IYNLICFNLGI 255
           LLQPF D +KL TK    P  +N   +   P+            IP   +Y+       +
Sbjct: 50  LLQPFYDVLKLMTKRTLVPENANLVVFLMVPLLGLASMGVAAAMIPIPGLYDPSPAFGDL 109

Query: 256 LFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYE 378
           L    L S+   ++++AG +S S +  +G  R +A  ++YE
Sbjct: 110 LVLFYLLSVPAVMLMLAGSASGSPFGGIGFSREMAIMLAYE 150


>UniRef50_Q0W3I4 Cluster: Ech hydrogenase, subunit B; n=1;
           uncultured methanogenic archaeon RC-I|Rep: Ech
           hydrogenase, subunit B - Uncultured methanogenic
           archaeon RC-I
          Length = 306

 Score = 39.9 bits (89), Expect = 0.056
 Identities = 31/121 (25%), Positives = 54/121 (44%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           ++RK+   +Q R+GP       ++QPF D  KLF KE    N  N     F   ++    
Sbjct: 37  IDRKLTARLQNRRGPP------IVQPFYDVFKLFGKE---DNVMNKAYLVFGLAYQ---- 83

Query: 196 XXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISY 375
                 +     L+ F   +L    +  L    +++AG+S  S ++ +G  R + Q ++Y
Sbjct: 84  ----TTVVLSLALLLFEYDLLVIAFVFGLSFIFLVLAGYSVRSQFSYIGSNRELLQMMTY 139

Query: 376 E 378
           E
Sbjct: 140 E 140


>UniRef50_Q3JDU8 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1 precursor; n=2; Proteobacteria|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1
           precursor - Nitrosococcus oceani (strain ATCC 19707 /
           NCIMB 11848)
          Length = 310

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 160 YYFSPVFRFIXXXXXXXXIPYIYNLIC--FNLGILFFLCLTSLGVYIVIIAGWSSNSNYA 333
           YY  PV   +        IP+  +L+    N+G+ +F+ +    V  + + GW +N+  +
Sbjct: 57  YYAGPVIACMGVSWAMVCIPFSPSLVGNDVNIGLFYFIVVVDFVVLGIALGGWGANTPDS 116

Query: 334 LLGGLRSVAQTISYEV 381
           +    R++AQ I+Y +
Sbjct: 117 VESCYRAIAQLIAYVI 132


>UniRef50_Q0FXV6 Cluster: NuoH2 NADH chain H; n=1; Fulvimarina
           pelagi HTCC2506|Rep: NuoH2 NADH chain H - Fulvimarina
           pelagi HTCC2506
          Length = 305

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = +1

Query: 88  QPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPYIYNLICF--NLGILF 261
           +P +DA +L   +R      +   ++ +PV            IP+   L+     +GI+ 
Sbjct: 41  RPIADAARLLQTQRIRTEAPDALLWFLAPVLYLALAIIGLAVIPFGPGLVTIPSEVGIVV 100

Query: 262 FLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
           +    +L +  V + GWS+N+   L+G  R VA
Sbjct: 101 WGSCEALTIVAVFMFGWSANAPLPLIGAYRYVA 133


>UniRef50_A0UXN8 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1; n=1; Clostridium cellulolyticum H10|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1 -
           Clostridium cellulolyticum H10
          Length = 312

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGP--NKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPV 177
           FL L+     G I+  K    +K+G   + QP+ D IKL  K+    + S++  Y  +P 
Sbjct: 14  FLLLIAPLFTGIIRKIKSKIQHKIG-ASIFQPYYDLIKLLKKDLVVSSTSSWI-YTVAPY 71

Query: 178 FRFIXXXXXXXXIPYIYNL--ICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLR 351
             FI        +P IY      F   +L  + L   G   + +AG  + S +  +G  R
Sbjct: 72  VYFITSLAAAMCLPIIYQFKGFSFYTDLLVIVYLLVAGRIFMALAGLDTGSTFGGMGSSR 131

Query: 352 SV 357
            +
Sbjct: 132 EL 133


>UniRef50_Q8TY38 Cluster: Membrane protein related to formate
           hydrogenlyase subunit 4; n=1; Methanopyrus kandleri|Rep:
           Membrane protein related to formate hydrogenlyase
           subunit 4 - Methanopyrus kandleri
          Length = 283

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 39/112 (34%), Positives = 49/112 (43%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           L RKV+  IQ R GP       ++Q F   +K   KE   P  S  F Y+  PVF  I  
Sbjct: 23  LHRKVMARIQRRPGPP------IVQEFLHTLKFMLKEGYAPLTSAEFLYWMVPVFNVI-I 75

Query: 196 XXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLR 351
                 I  +Y     NL + FF    S  V +   AG SS S Y  +GG+R
Sbjct: 76  WSAAVTISAVYR---GNL-LPFFALYASYKV-LSHGAGVSSGSTYTKIGGVR 122


>UniRef50_A6DB52 Cluster: HYDROGENASE-4 COMPONENT C; n=3;
           Epsilonproteobacteria|Rep: HYDROGENASE-4 COMPONENT C -
           Caminibacter mediatlanticus TB-2
          Length = 308

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 47/211 (22%), Positives = 74/211 (35%), Gaps = 7/211 (3%)
 Frame = +1

Query: 4   FLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFR 183
           F   + R +   +Q RKGP         Q + D  KLF + R YP  + ++ + ++P   
Sbjct: 21  FFDGVARMIRAKMQARKGPPDP-----FQTYRDLYKLFKRGRVYPK-NAHWVFKYAPYIM 74

Query: 184 FIXXXXXXXXIPYIYNLICFNLGILFFL-CLTSLGVYIVIIAGWSSNSN---YALLGGLR 351
           F         +P  Y    F  G++  L  +  LG +   I G +SN +   +A +GG R
Sbjct: 75  FGVVATMLAALPITY-ATDFKAGVVSDLFVILYLGAFFRFIFGVASNDSGNAFAAIGGSR 133

Query: 352 SVAQTISYE---VRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXA 522
                +  E   V                   +   + +                     
Sbjct: 134 EQMIGVFVEPVIVLCLIVVMLLAKTSNLVEIQYMVKHWQIGYIYPSFAIASIAFLWAIYV 193

Query: 523 ETNRTPFDFAEGERELVSGFNIEYRRGGFAL 615
           E  R P+D AE E+EL  G   EY     A+
Sbjct: 194 EMARNPYDLAEAEQELQEGVLGEYSGSDLAI 224


>UniRef50_A3Q532 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1 precursor; n=4; Actinomycetales|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1
           precursor - Mycobacterium sp. (strain JLS)
          Length = 312

 Score = 37.5 bits (83), Expect = 0.30
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +1

Query: 226 YNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEV 381
           + L+  ++G+++   +  +   +V +AGW  NS ++L+GG R +A  + YE+
Sbjct: 96  WTLLDIDVGVMWVNAVDVMMWAVVWLAGWGPNSVHSLIGGYRFLAHALGYEL 147


>UniRef50_Q8THY9 Cluster: Hydrogenase-3 subunit; n=7; cellular
           organisms|Rep: Hydrogenase-3 subunit - Methanosarcina
           acetivorans
          Length = 313

 Score = 37.5 bits (83), Expect = 0.30
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           L RKV  Y Q RKGP       L Q + D  KL  KE  Y   S++    F+P       
Sbjct: 26  LIRKVKAYAQWRKGPR------LFQVYYDLKKLMQKEAVYSPTSSW-VMRFTPYLNLSTL 78

Query: 196 XXXXXXIPYIY-NLICFNLG-ILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVA 360
                 +P I+       LG I+ FL L +L  +   + G  + S +  +G  RS++
Sbjct: 79  LVCSLFVPLIFVPEPAGGLGNIIVFLYLLALERFFTALGGLDAGSAFGGMGSSRSMS 135


>UniRef50_Q57940 Cluster: Putative NADH-ubiquinone oxidoreductase
           MJ0520; n=8; Euryarchaeota|Rep: Putative NADH-ubiquinone
           oxidoreductase MJ0520 - Methanococcus jannaschii
          Length = 295

 Score = 37.5 bits (83), Expect = 0.30
 Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 1/223 (0%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           L RK++  IQ R GP       ++Q     +K + KE T+P  +       +P++ F+  
Sbjct: 28  LHRKIMARIQGRPGPP------IIQYLLHTLKFYVKEITFPITAG------NPLYIFVAL 75

Query: 196 XXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISY 375
                 +  +   I F   +L  + +  L   +    G SS S Y  +GG+RSV    + 
Sbjct: 76  LDIAIWLAALIIAIDFKSSLLIIIGIYVLQKIVEHGCGLSSGSPYGKIGGVRSVFSAAA- 134

Query: 376 EVRXXXXXXXXXXXXXXXXXYFFYLYQE-XXXXXXXXXXXXXXXXXXXXAETNRTPFDFA 552
           EV                       YQE                     ++   +PF   
Sbjct: 135 EVPLFAVVAAIYLTTHSVLISDILSYQEIHGSLLFKMPICAFAFFILLVSKAPNSPFGIV 194

Query: 553 EGERELVSGFNIEYRRGGFALIFLAEYSSILFIRMILVIIKYG 681
           +G +++VSG+  E+     A+I++AE  +   +  + + +  G
Sbjct: 195 KG-KDIVSGYMTEHYGLLGAIIYIAEAIAYFVLLWLFIAVFIG 236


>UniRef50_UPI00015BC866 Cluster: UPI00015BC866 related cluster; n=1;
           unknown|Rep: UPI00015BC866 UniRef100 entry - unknown
          Length = 305

 Score = 37.1 bits (82), Expect = 0.40
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = +1

Query: 82  LLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIPYI--YNLICFNLGI 255
           +LQP+ D IKLF KE      ++ F    +P+   +        IP      L+ F   +
Sbjct: 40  ILQPYKDLIKLFRKEPVISKDAS-FISKIAPIVVLLATIISASFIPIFSPNTLLSFTGDV 98

Query: 256 LFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSV 357
           + F+ +  L  + + + G    S++  LG  R +
Sbjct: 99  IAFMYVLGLSTFFIALYGLDQGSSFGGLGSAREM 132


>UniRef50_A5G4V9 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1 precursor; n=3; cellular organisms|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1
           precursor - Geobacter uraniumreducens Rf4
          Length = 293

 Score = 37.1 bits (82), Expect = 0.40
 Identities = 53/225 (23%), Positives = 85/225 (37%), Gaps = 4/225 (1%)
 Frame = +1

Query: 16  LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXX 195
           ++RKV   +Q R GP       ++QPF D  KL  KER   N    F     P+  F+  
Sbjct: 34  IDRKVSARLQGRYGPP------VMQPFYDVFKLLRKERIIVNKFQDF-----PIVLFLLF 82

Query: 196 XXXXXXIPYIYNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISY 375
                 + +    +   L I+F L L   G + V + G+   S Y+ LG  R + Q ++Y
Sbjct: 83  TMFSGALFFAGADL---LLIIFSLALA--GTFFV-LGGYCVASPYSHLGAEREIIQMVAY 136

Query: 376 EVRXXXXXXXXXXXXXXXXXYFFYLYQEXXXXXXXXXXXXXXXXXXXXAETNRTPFDFA- 552
           E                       + Q                      +  ++PFD + 
Sbjct: 137 E--PMVILMAVGMYQVTGSFRVGTIAQHHAPLILFLPGVFAGFLFILTIKFRKSPFDLSM 194

Query: 553 --EGERELVSGFNIEYRRGGFALIFLAE-YSSILFIRMILVIIKY 678
                +E+VSG   E+     ALI +A  Y ++L + MI +   +
Sbjct: 195 SHHAHQEIVSGITTEFVGPALALIEIAHWYETVLLLGMIYLFFAF 239


>UniRef50_Q1AZS1 Cluster: Respiratory-chain NADH dehydrogenase,
           subunit 1 precursor; n=2; Bacteria|Rep:
           Respiratory-chain NADH dehydrogenase, subunit 1
           precursor - Rubrobacter xylanophilus (strain DSM 9941 /
           NBRC 16129)
          Length = 303

 Score = 36.3 bits (80), Expect = 0.69
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
 Frame = +1

Query: 40  IQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPVFRFIXXXXXXXXIP 219
           + + +G +  G +    P   A  L  +E   P   +   +  +P+   +        +P
Sbjct: 22  VAVLEGWSATGRLRPAGPAVSAAALLGRESVVPRRPDRVLFEAAPLLLLVSAVLAAAVLP 81

Query: 220 YIYNLICFNL--GILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEV 381
               L+  +L  G LF     +  +  +++AGW  ++ YA++ G R + Q + Y +
Sbjct: 82  LSPRLVVADLATGALFVNAALAYVMVALLMAGWGPDAAYAMVAGWRFLGQLLGYSM 137


>UniRef50_A2BJ97 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=1; Hyperthermus butylicus DSM 5456|Rep:
           NADH-ubiquinone oxidoreductase chain 1 - Hyperthermus
           butylicus (strain DSM 5456 / JCM 9403)
          Length = 262

 Score = 35.9 bits (79), Expect = 0.91
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 2/145 (1%)
 Frame = +1

Query: 253 ILFFLCLTSLGVYIVIIAGWSSNSNYALLGGLRSVAQTISYEVRXXXXXXXXXXXXXXXX 432
           +L    L SL   ++++ GW++++ + L+G  R +   I+ EV                 
Sbjct: 49  MLIAYALLSLTSIVILVMGWAASNKFTLIGAGREILTAIAGEVVLLASILPTALMYGTLD 108

Query: 433 XYFFYLYQEXXXXXXXXXXXXXXXXXXXXAE--TNRTPFDFAEGERELVSGFNIEYRRGG 606
                  Q                     A   T+R PFD   GE+E+V+G   EY    
Sbjct: 109 INEAVRAQMETGIIGLVANPVAALLYFLAAMLITDRIPFDLVLGEQEIVNGPYTEYSGFL 168

Query: 607 FALIFLAEYSSILFIRMILVIIKYG 681
           + L    +Y+ +  + M+   +  G
Sbjct: 169 YVLSMALDYAKLYALMMLFTDLFLG 193


>UniRef50_Q37142 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=2; cellular organisms|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Artemia parthenogenetica (Brine
           shrimp)
          Length = 22

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 79  GLLQPFSDAIKLFTKERTYP 138
           G+LQPFSD IKLF+KE + P
Sbjct: 1   GVLQPFSDGIKLFSKEVSLP 20


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 354,029,395
Number of Sequences: 1657284
Number of extensions: 4789996
Number of successful extensions: 12872
Number of sequences better than 10.0: 188
Number of HSP's better than 10.0 without gapping: 12433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12736
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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